TCONS_00045445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045445
Unique NameTCONS_00045445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045445 ID=TCONS_00045445|Name=TCONS_00045445|organism=Clytia hemisphaerica|type=transcript|length=697bp
CAGCAAACAAATTATTTGAGTCTTATCTCACAAGTAGAACCCAATTTGTC
CAAATCCGCAACTCAGTCTCAAAAGTAGCAGAAATCATACATGGAGTACC
TCAAGGATCAGTTCTAGGACCCCTACTCTTTCTTCTTTATATAAATGATT
TATACTTGGCAATTAAACATTCCAAAACCTTTCATTTTGCAGATGACACC
TGTATTNGCAGAAATCAAACATGGAGTACCTCAAGGATCAGTTCTAGGAC
CCCTACTCTTTCTTCTTTATATAAATGATTTACACTTGGCAATTAAACAT
TCCAAAACCTTTCATTTTGCAGATGACACCTGTATCATCTACTCaaataa
atctttaaaacaatTGAATTCTAAACTTAACCATGACCTAAAACTGATGT
CGGAATGGCTCAGAGCAAATAAGATCAGCTTAAATGCTAAAAAAACTGAT
GTAGtagtttttaaagcaaaaagaaaaacctgctataaaaaattaaattt
cagacTTAGTGgacaaaaacttgaaataacAAACAACACAAAATACTTGG
GAATAATCTTAGATGAAAATCTCAACTGGAATACTAACATCAATGAGGTA
TGCAAAGAGCTCTCAAGATCAGTTGGTATCTTTGCAAAACTTAGACACTA
TCTTGACTACAAAACTATGCTCTCCCTTTACTACTCAATGTTCCACT
Run BLAST on NCBI

protein sequence of TCONS_00045445-protein

>TCONS_00045445-protein ID=TCONS_00045445-protein|Name=TCONS_00045445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MIYTWQLNIPKPFILQMTPVXAEIKHGVPQGSVLGPLLFLLYINDLHLAI
KHSKTFHFADDTCIIYSNKSLKQLNSKLNHDLKLMSEWLRANKISLNAKK
TDVVVFKAKRKTCYKKLNFRLSGQKLEITNNTKYLGIILDENLNWNTNIN
EVCKELSRSVGIFAKLRHYLDYKTMLSLYYSMFH
Run BLAST on NCBI

transcript from alignment at sc0007844:2..698

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045445 ID=TCONS_00045445|Name=TCONS_00045445|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at sc0007844:2..698 (Clytia hemisphaerica)
AGTGGAACATTGAGTAGTAAAGGGAGAGCATAGTTTTGTAGTCAAGATAG
TGTCTAAGTTTTGCAAAGATACCAACTGATCTTGAGAGCTCTTTGCATAC
CTCATTGATGTTAGTATTCCAGTTGAGATTTTCATCTAAGATTATTCCCA
AGTATTTTGTGTTGTTTgttatttcaagtttttgtcCACTAAgtctgaaa
tttaattttttatagcaggtttttctttttgctttaaaaactaCTACATC
AGTTTTTTTAGCATTTAAGCTGATCTTATTTGCTCTGAGCCATTCCGACA
TCAGTTTTAGGTCATGGTTAAGTTTAGAATTCAattgttttaaagattta
tttGAGTAGATGATACAGGTGTCATCTGCAAAATGAAAGGTTTTGGAATG
TTTAATTGCCAAGTGTAAATCATTTATATAAAGAAGAAAGAGTAGGGGTC
CTAGAACTGATCCTTGAGGTACTCCATGTTTGATTTCTGCNAATACAGGT
GTCATCTGCAAAATGAAAGGTTTTGGAATGTTTAATTGCCAAGTATAAAT
CATTTATATAAAGAAGAAAGAGTAGGGGTCCTAGAACTGATCCTTGAGGT
ACTCCATGTATGATTTCTGCTACTTTTGAGACTGAGTTGCGGATTTGGAC
AAATTGGGTTCTACTTGTGAGATAAGACTCAAATAATTTGTTTGCTG

Coding sequence (CDS) from alignment at sc0007844:2..698

>TCONS_00045445 ID=TCONS_00045445|Name=TCONS_00045445|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0007844:2..698 (Clytia hemisphaerica)
GTGGAACATTGAGTAGTAAAGGGAGAGCATAGTTTTGTAGTCAAGATAGT
GTCTAAGTTTTGCAAAGATACCAACTGATCTTGAGAGCTCTTTGCATACC
TCATTGATGTTAGTATTCCAGTTGAGATTTTCATCTAAGATTATTCCCAA
GTATTTTGTGTTGTTTgttatttcaagtttttgtcCACTAAgtctgaaat
ttaattttttatagcaggtttttctttttgctttaaaaactaCTACATCA
GTTTTTTTAGCATTTAAGCTGATCTTATTTGCTCTGAGCCATTCCGACAT
CAGTTTTAGGTCATGGTTAAGTTTAGAATTCAattgttttaaagatttat
ttGAGTAGATGATACAGGTGTCATCTGCAAAATGAAAGGTTTTGGAATGT
TTAATTGCCAAGTGTAAATCATTTATATAAAGAAGAAAGAGTAGGGGTCC
TAGAACTGATCCTTGAGGTACTCCATGTTTGATTTCTGCNAATACAGGTG
TCATCTGCAAAATGAAAGGTTTTGGAATGTTTAATTGCCAAGTATAAATC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029023XLOC_029023Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045445-proteinTCONS_00045445-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045445-exon-sc0007844-1491911889:2..698TCONS_00045445-exon-sc0007844-1491911889:2..698Clytia hemisphaericaexon
TCONS_00045445-exon-sc0007844-1510915933:2..698TCONS_00045445-exon-sc0007844-1510915933:2..698Clytia hemisphaericaexon
TCONS_00045445-exon-sc0007844-1575043694:2..698TCONS_00045445-exon-sc0007844-1575043694:2..698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007844supercontigsc0007844:2..698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.567154	0.16463	0.322129	4.90202	3.76909	3.83218	5.1627	0.698438	0.988547	1.15784	1.49998	0.779929	0.523842	1.10277	0.428479	0.555953	0.485846	0.307609	0.913293	1.83835	1.35512	0.333427	1.59145	0.251646	0.975272	0.868107	0.744717	0.618541	0.714893
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top