TCONS_00045341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045341
Unique NameTCONS_00045341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045341 ID=TCONS_00045341|Name=TCONS_00045341|organism=Clytia hemisphaerica|type=transcript|length=430bp
CTTGCTAAGTTTGAGGGTGAAGTAATCACCATGGCAACATACTCATATAT
AGTGCCTCTTTACGAATTGGCCAATTTTTACTGTGATACTCTCACAGAAG
CCCTTTTCTTATAACATAGTGTGTATTCACTGTCATCTTTTAAACAGGAA
ACATATAAAAATGTCTGTTCAACGTGTTATCAAGACTCCAGAGCAAGTTA
AAATTCTTGATGAGTTATATGAAAGAGGGATGACCTCTTATGGACGAGAT
CATAAAGAGGTAAAGAAATTGATCGAAGAAGCAGTTGAGAGGACTGGTTT
GACTGCACAACAAATAAAGAATTGGATAAACCACCAGAAAAAGCCTACGG
ATGatagcaaaaaagaaaaagtgttgACTCGAAAACCACGAGGCTATGAT
TTGTTTAGGAGAGAAGAATTAGCAGGTATG
Run BLAST on NCBI

transcript from alignment at sc0007557:216..795-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045341 ID=TCONS_00045341|Name=TCONS_00045341|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at sc0007557:216..795- (Clytia hemisphaerica)
CTTGCTAAGTTTGAGGGTGAAGTAATCACCATGGCAACATACTCATATAT
AGTGCCTCTTTACGAATTGGCCAATTTTTACTGTGATACTCTCACAGAAG
CCCTTTTCTTATAACATAGTGTGTATTCACTGTCATCTTTTAAACAGGAA
ACATATAAAAATGTCTGTTCAACGTGTTATCAAGACTCCAGAGCAAGTTA
AAATTCTTGATGAGTTATATGAAAGAGGGATGACCTCTTATGGACGAGAT
CATAAAGAGGTAAAGAAATTGATCGAAGAAGCAGTTGAGAGGACTGGTTT
GACTGCACAACAAATAAAGGTAATTTTCGCTAATGAAAATGTCGCAGTCT
ATTTCGGGTCGAATTCGGATTTTGCTCAACCACGGCGAGAGTTATGATTT
TATATTTTGAAAATGTTTTATCTTTTTCTTTAAAGTATTTGAATTCCTTA
GTATCCATTCATTTTATAGAATTGGATAAACCACCAGAAAAAGCCTACGG
ATGATAGCAAAAAAGAAAAAGTGTTGACTCGAAAACCACGAGGCTATGAT
TTGTTTAGGAGAGAAGAATTAGCAGGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028922XLOC_028922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045341-exon-sc0007557-1575043694:477..795TCONS_00045341-exon-sc0007557-1575043694:477..795Clytia hemisphaericaexon
TCONS_00045341-exon-sc0007557-1575043694:216..326TCONS_00045341-exon-sc0007557-1575043694:216..326Clytia hemisphaericaexon
TCONS_00045341-exon-sc0007557-1510915933:477..795TCONS_00045341-exon-sc0007557-1510915933:477..795Clytia hemisphaericaexon
TCONS_00045341-exon-sc0007557-1510915933:216..326TCONS_00045341-exon-sc0007557-1510915933:216..326Clytia hemisphaericaexon
TCONS_00045341-exon-sc0007557-1491911889:477..795TCONS_00045341-exon-sc0007557-1491911889:477..795Clytia hemisphaericaexon
TCONS_00045341-exon-sc0007557-1491911889:216..326TCONS_00045341-exon-sc0007557-1491911889:216..326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007557supercontigsc0007557:216..795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.642131	0.626179	0.181763	0.177827	10.8244	6.50071	13.4154	8.88812	5.54639	7.87548	3.09018	4.27656	8.0074	8.42664	12.7618	15.554	14.9434	7.04065	9.21509	11.9644	4.34594	4.76955	3.31315	5.85692	1.89593	2.92266	14.7482	13.1555	13.3634	7.62451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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