TCONS_00045225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045225
Unique NameTCONS_00045225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045225 ID=TCONS_00045225|Name=TCONS_00045225|organism=Clytia hemisphaerica|type=transcript|length=298bp
TTTACAGCGTTTGGATTTATCAGAAGACGTGGCTGGTGCAACTTTCATGG
CAGCTGGAAGTTCTGCTCCTGAATTCTTCACCTCAATCATCGGTGTTTTC
ATCACCAAAGGAGACGTTGGAGTGGGAACCATCGTTGGTTCAGCTgtttt
caatatacttgttattATTGCTCTATGTGCTACTTTTGCTGGACAGGTAG
TTCACTTAACTTGGTGGCCGTTAATTCGAGATTCTTCAGTTTACATTTTA
TCCATCGCTCTCTTGATCCTGGTAAGCTATTTGAAAAggcttttcact
Run BLAST on NCBI

protein sequence of TCONS_00045225-protein

>TCONS_00045225-protein ID=TCONS_00045225-protein|Name=TCONS_00045225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
LQRLDLSEDVAGATFMAAGSSAPEFFTSIIGVFITKGDVGVGTIVGSAVF
NILVIIALCATFAGQVVHLTWWPLIRDSSVYILSIALLILVSYLKRLFT
Run BLAST on NCBI

transcript from alignment at sc0007242:38..1014+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045225 ID=TCONS_00045225|Name=TCONS_00045225|organism=Clytia hemisphaerica|type=transcript|length=977bp|location=Sequence derived from alignment at sc0007242:38..1014+ (Clytia hemisphaerica)
TTTACAGCGTTTGGATTTATCAGAAGACGTGGCTGGTGCAACTTTCATGG
CAGCTGGAAGTTCTGCTCCTGAATTCTTCACCTCAATCATCGGTATCATG
TCCCCTTTTATCTTTGGGCAATTAATGataactttctttcttttttttag
ttCTACATTTTAAGAAAAGTGTTGACTTTttattattcatgatatgcaac
actggagagtctttttagaattttcaaaaagttccacccaatacgtcact
taaacaatagaaaaagtgccGTATTGGgttgaaattcttaaaaattgttg
GAAGACTCTCCAATGTTGTATATTATGAATATAGATAACCTTGCTCCATT
TCACAGGCTTTTCATTATCTAAAAAGGACGTTGTGAAGGATACAGAGCTT
CACGAGTTTTTTCATAAGCCTTCGCCGgtccaaggcacgaaaaaaaatac
aattggCCGTTCGAAAAGTTCGGTTCGCCGTCTCAAATACATAtttacgc
taatcaatacacCGCGTTTGCTAAGAATTTGCCGGCCTAGAATATAAAAA
TCGCCAGAGTTAATTTTTCTCTCGGCAAcctaccaaaaacaaagcaaaac
cctTGCGATACGTTAACATGCCACTAATTTCTGTCTCTTGTTTCCAGGTG
TTTTCATCACCAAAGGAGACGTTGGAGTGGGAACCATCGTTGGTTCAGCT
gttttcaatatacttgttattATTGCTCTATGTGCTACTTTTGCTGGACA
GGTACGTGGTGATAGTTTTTCACTTGTAAACAATGAATGAATGACGATAC
AATatttatcaaatttcaaatgCAATATTGCAGGCTTCATTAAGCTTTAA
TTTAACAGTGAAACTCTTCTTTCAGGTAGTTCACTTAACTTGGTGGCCGT
TAATTCGAGATTCTTCAGTTTACATTTTATCCATCGCTCTCTTGATCCTG
GTAAGCTATTTGAAAAggcttttcact

Coding sequence (CDS) from alignment at sc0007242:38..1014+

>TCONS_00045225 ID=TCONS_00045225|Name=TCONS_00045225|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0007242:38..1014+ (Clytia hemisphaerica)
TTACAGCGTTTGGATTTATCAGAAGACGTGGCTGGTGCAACTTTCATGGC
AGCTGGAAGTTCTGCTCCTGAATTCTTCACCTCAATCATCGGTGTTTTCA
TCACCAAAGGAGACGTTGGAGTGGGAACCATCGTTGGTTCAGCTgttttc
aatatacttgttattATTGCTCTATGTGCTACTTTTGCTGGACAGGTAGT
TCACTTAACTTGGTGGCCGTTAATTCGAGATTCTTCAGTTTACATTTTAT
CCATCGCTCTCTTGATCCTGGTAAGCTATTTGAAAAggcttttcactTTA
CAGCGTTTGGATTTATCAGAAGACGTGGCTGGTGCAACTTTCATGGCAGC
TGGAAGTTCTGCTCCTGAATTCTTCACCTCAATCATCGGTGTTTTCATCA
CCAAAGGAGACGTTGGAGTGGGAACCATCGTTGGTTCAGCTgttttcaat
atacttgttattATTGCTCTATGTGCTACTTTTGCTGGACAGGTAGTTCA
CTTAACTTGGTGGCCGTTAATTCGAGATTCTTCAGTTTACATTTTATCCA
TCGCTCTCTTGATCCTGGTAAGCTATTTGAAAAggcttttcactTTACAG
CGTTTGGATTTATCAGAAGACGTGGCTGGTGCAACTTTCATGGCAGCTGG
AAGTTCTGCTCCTGAATTCTTCACCTCAATCATCGGTGTTTTCATCACCA
AAGGAGACGTTGGAGTGGGAACCATCGTTGGTTCAGCTgttttcaatata
cttgttattATTGCTCTATGTGCTACTTTTGCTGGACAGGTAGTTCACTT
AACTTGGTGGCCGTTAATTCGAGATTCTTCAGTTTACATTTTATCCATCG
CTCTCTTGATCCTGGTAAGCTATTTGAAAAggcttttcact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028808XLOC_028808Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045225-proteinTCONS_00045225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045225-exon-sc0007242-1491911889:38..129TCONS_00045225-exon-sc0007242-1491911889:38..129Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1510915933:38..129TCONS_00045225-exon-sc0007242-1510915933:38..129Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1575043694:38..129TCONS_00045225-exon-sc0007242-1575043694:38..129Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1491911889:685..788TCONS_00045225-exon-sc0007242-1491911889:685..788Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1510915933:685..788TCONS_00045225-exon-sc0007242-1510915933:685..788Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1575043694:685..788TCONS_00045225-exon-sc0007242-1575043694:685..788Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1491911889:913..1014TCONS_00045225-exon-sc0007242-1491911889:913..1014Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1510915933:913..1014TCONS_00045225-exon-sc0007242-1510915933:913..1014Clytia hemisphaericaexon
TCONS_00045225-exon-sc0007242-1575043694:913..1014TCONS_00045225-exon-sc0007242-1575043694:913..1014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007242supercontigsc0007242:38..1014 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.9071	15.91	7.65957	6.17128	90.6919	74.6344	46.5564	52.2069	34.8746	27.8294	46.7668	25.1772	29.112	28.3092	24.4038	26.674	30.4703	29.0878	15.2285	37.6256	15.7746	16.8899	18.7069	26.1331	19.2261	15.6336	10.3673	8.15264	26.5007	16.65
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00045225 vs. Swiss-Prot (Human)
Match: NCKX4 (Sodium/potassium/calcium exchanger 4 OS=Homo sapiens GN=SLC24A4 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.743e-37
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 2 
Query:    5 QRLDLSEDVAGATFMAAGSSAPEFFTSIIGVFITKGDVGVGTIVGSAVFNILVIIALCATFAGQVVHLTWWPLIRDSSVYILSIALLILVSYLKRL 292
            +RL LSEDVAGATFMAAGSS PE F S+IGVFIT GDVGVGTIVGSAVFNIL II +C  FAGQVV LTWW + RDS  Y +S+ +LI+  Y +++
Sbjct:  131 ERLHLSEDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYYTISVIVLIVFIYDEQI 226
The following BLAST results are available for this feature:
BLAST of TCONS_00045225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX41.743e-3768.75Sodium/potassium/calcium exchanger 4 OS=Homo sapie... [more]
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