TCONS_00045225-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045225-protein
Unique NameTCONS_00045225-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length99

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045225-protein ID=TCONS_00045225-protein|Name=TCONS_00045225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
LQRLDLSEDVAGATFMAAGSSAPEFFTSIIGVFITKGDVGVGTIVGSAVF
NILVIIALCATFAGQVVHLTWWPLIRDSSVYILSIALLILVSYLKRLFT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028808XLOC_028808Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045225TCONS_00045225Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004837Sodium/calcium exchanger membrane regionPFAMPF01699Na_Ca_excoord: 4..91
e-value: 2.4E-18
score: 66.4

Blast
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BLAST of TCONS_00045225-protein vs. Swiss-Prot (Human)
Match: NCKX4 (Sodium/potassium/calcium exchanger 4 OS=Homo sapiens GN=SLC24A4 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.830e-38
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 0 
Query:    2 QRLDLSEDVAGATFMAAGSSAPEFFTSIIGVFITKGDVGVGTIVGSAVFNILVIIALCATFAGQVVHLTWWPLIRDSSVYILSIALLILVSYLKRL 97
            +RL LSEDVAGATFMAAGSS PE F S+IGVFIT GDVGVGTIVGSAVFNIL II +C  FAGQVV LTWW + RDS  Y +S+ +LI+  Y +++
Sbjct:  131 ERLHLSEDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYYTISVIVLIVFIYDEQI 226
The following BLAST results are available for this feature:
BLAST of TCONS_00045225-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX44.830e-3868.75Sodium/potassium/calcium exchanger 4 OS=Homo sapie... [more]
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