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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000011 ID=TCONS_00000011|Name=TCONS_00000011|organism=Clytia hemisphaerica|type=transcript|length=785bp
TTGGCAACTAAATCTCTGTATATGGTGGCGAGTAGAAGTTTTTCTTGGCA
TGTAAGGAAAATCATTCTTTTAGTGTGTGTATGAAGTGTAATTGATTTGA
CTCTACTGATTtgatttgacaaatttttttaaagaagtagCAAATTTGAC
AACACAAAATgaactttttgaaattagttGTAACACTTTTGGCAACCATT
GCGTTGATCAATGAAAGTGAAGCAATGCCACCGCCACCACCGCCGCCATC
TAATCAACAACAATCTCAGCAACAACAAGAACAAACCCAACAACAGCAAG
AACAAACTCAAGAACAGCAGCAACAAACACAACAACAATCATCAGATCAA
CAGTTAGTTCAACCAGCGCAAATCTCACAAGTTACAAGCGAAGAAGCACC
GGAATGCCCAATGGAGCAATTACCATGTACAATATGTTCAGAAGGACTAA
AAACAAAATGTGGTTGTAAACCAGGTTGTGGCGAATGCACATCGATACCA
GGCTGGAATTATAGCTTCTGCTCGAATAAAGTCGAAGGACGCCCGTTAGA
TTAGAAACAAGTTTGAAGGAGGCTCAACGAAAGCTAACAACTGTCATATA
ACCCTAGATAAATTTGTTGTTAAATGAGGATTTGAATGATTTTGTAGAGA
ATATAGCTTATATTTGATGTACTTGttactgtacacgttttttattagaa
catccaccatctttgaagacttcagatgttcttaacttttttagtactaa
gcccaaaaatgttcttaacatgttcttaatttcac Run BLAST on NCBI protein sequence of TCONS_00000011-protein >TCONS_00000011-protein ID=TCONS_00000011-protein|Name=TCONS_00000011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNFLKLVVTLLATIALINESEAMPPPPPPPSNQQQSQQQQEQTQQQQEQT
QEQQQQTQQQSSDQQLVQPAQISQVTSEEAPECPMEQLPCTICSEGLKTK
CGCKPGCGECTSIPGWNYSFCSNKVEGRPLD Run BLAST on NCBI transcript from alignment at sc0000001:314485..318198+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000011 ID=TCONS_00000011|Name=TCONS_00000011|organism=Clytia hemisphaerica|type=transcript|length=3714bp|location=Sequence derived from alignment at sc0000001:314485..318198+ (Clytia hemisphaerica)
TTGGCAACTAAATCTCTGTATATGGTGGCGAGTAGAAGTTTTTCTTGGCA
TGTAAGGAAAATCATTCTTTTAGTGTGTGTATGAAGTGTAATTGATTTGA
CTCTACTGATTtgatttgacaaatttttttaaagaagtagCAAATTTGAC
AACACAAAATgagtaagtatttatttttttcgttaAGGTTCATCCCTGTC
GTTTCCAAACTCAGGTTAACAGGGCCTCCTTAACACAAATGGACTGCTCT
CAGATATAATGGTCTGTACAAATTAATAAAACGTCATCCAAATGATTTCA
TTGATTCCCATATAGCCATTTCCAAACAGACAAAATGTTGCTTTTCATTG
ATCACTTTTTTTCTTCGGAAAAAACGGTCTGTAAAATAACAATAAGCCAT
CAAATGGTCACAAaaacattttggatgttcttattaccTCACATTTGACA
CTGTTCTTTAGAATGCAGTGTTTTTTCAAGCTGTTTAGAAAAGTTTTTGg
ccttatgaaaaaatatttcgactAGCTTTGCTGCAAGCTCATGCTAATTT
TTATCGaactaaattttgttttaacttTTCGCCATTATCGAATAAGACGT
TCAAATCTGGAGAANNaaccactattttgaagatttcgagacgaagaagc
atttacaaaaattttccgcaaaaatttttattgttcggtaaaagatacac
catctactgcgaaaaatatttcaaaatgcNNNatgtataacatgccatag
ttttgttggttacatcagtcagaaaacacattttaaacacggcaattatg
aaaaattcactatggtcagagcccttaagtacgCAATTCGAACGTTTAGC
TTTCATACGTAATAATGGAAGTTACATAACGGACGTTaacttaaaaacat
caaaaatccCTATAGCTATATCTCTATGGAATGCCACCACATCTCAAATT
TTCATTCACCCTTGTAAACTTTGTTTGAATTGAAACGGGCCTTCTAAACA
AACGTAGGTTGAAATGTACAATCGAGGTTATCCATGAAAAGGCTTTTGTA
GAAatcttaatgttttttttttacattacagactttttgaaattagttGT
AACACTTTTGGCAACCATTGCGTTGATCAATGAAAGTGAAGCAATGCCAC
CGCCACCACCGCCGCCATCTAATCAACAACAATCTCAGCAACAACAAGAA
CAAACCCAACAACAGCAAGAACAAACTCAAGAACAGCAGCAACAAACACA
ACAACAATCATCAGATCAACAGTTAGTTCAACCAGCGCAAATCTCACAAG
TTACAAGCGAAGAAGCACCGGTAATAACACCAGTTAAATTTCTAGTGGCA
GGGGAttctatcgtctacacaagatcactaaaaaagggaaaagtTTAGAA
AGCAGGATAAATTTAAAAACGGTGGTAAGCCcggcggagtaagcagtggc
ggggGTGTTTACAGTGTTTGTTCCAAAGTCTACTGCCactttttttcccg
taaaccgccctgacacCTTGACTCTGCGCGTATAGTTTTCCCGAgtttac
tgaccctctaacGGACAATAGCATCGTCTAGGGAGGAGGTTAAAAATCAG
ATAAAATGATGATGTTCATAAACATATAACTCATTTACAATGAACATTCT
CAAATATGTGACTTCCCAAGCGAAtaaaagtacctgaaaatcggACCGGC
TTTGTTACGGCATTATGAGTGGTCTAGTAGAGGTCAAATTGTTGCTTCAG
ATCGGCCTTCATACCCTCTAGAAAATAGCGGTCCTGGTCTCTCGTTGGGC
CGGTCGTGACCGCTCCTTAGACCTGATCTGGCCGTTAGTTAGTGTTTGTT
GTTAGCTTACATCAATAAGTTATTATAAAAAGAAGTCTACTGATCGATAA
TGAGACCGGTCTGGACTTGAACGCGCTTCGATGTGGCCGCTAAATTCACA
GGAGTCGTAGCGGCCTTTTCGGAAAGTTTGTCAGTCATTTACTAACCCTA
TCAAAAGACCTGAAGAACGGCCCGATTTccaaaatacttaaaatcgcttg
aggAATCACATGTTATAAGTTAAAGTGAGCATAATAATTCAGTTCCTTTG
AAAACaaacacccttacagtgtactttgggAAACTTGGAAAAGGGACCTT
TgaagggccgcacgtatggtaggTCGCTTACCTTGAGTGGGATACCCCCG
GTGGTATCTCTAGTTTcttaacccagctggcacacaacgttgtttcaacg
ttcacctaacgttatatggacgacacaacgttgtgtgccagctaggaACA
TTAAACGCCAtgtctttatttttctatttgtaGGAATGCCCAATGGAGCA
ATTACCATGTACAATATGTTCAGAAGGACTAAAAACAAAATGTGGTTGTA
AACCAGGTTGTGGCGAATGCACATCGATACCAGGCTGGAATTATAGCTTC
TGCTCGAATAAAGTCGAAGGACGCCCGTTAGATTAGAAACAAGTTTGAAG
GAGGCTCAACGAAAGCTAACAACTGTCATATAACCCTAGATAAATTTGTT
GTTAAATGAGGATTTGAATGATTTTGTAGAGAATATAGCTTATATTTGAT
GTACTTGttactgtacacgttttttattagaacatccaccatctttgaag
acttcagatgttcttaacttttttagtactaagcccaaaaatgttcttaa
catgttcttaatttcaccactttatgagtatttttgtccattttcaaaag
aaaaaagtccccaaagccttaaaaggTTCTTAACTTGTGCTTAATATTTT
GAACATCGacgccttatgttcttatgaagTTTNAGTTAGTGTTTGTTGTT
AGCTTACATCAATAAGTTATTATAAAAAGAAGTCTACTGATCGATAATGA
GACCGGTCTGGACTTGAACGCGCTTGGATGTGGCCGCTAAATTCACAGGA
GTCGTAGCGGCCTTTTCGGAAAGTTTGTCAGTCATTTACTAACCCTATCA
AAAGACCTGAATAACGGCCCGATTTccaaaatacttaaaatcgcttgagg
AATCACATGTTATAAGTTAAAGTGAGCATAATAATTCAGTTCCTTTGAAA
ACaaacacccttacagtgtactttgggAAACTTGGAAAAGGGACCTTTga
agggccgcacgtatggtaggTCGCTTACCTTGAGTGGGATACCCCCGGTG
GTATCTCTAGTTTcttaacccagctggcacacaacgttgtttcaacgttc
acctaacgttatatggacgacacaacgttgtgtgccagctaggaACATTA
AACGCCAtgtctttatttttctatttgtaGGAATGCCCAATGGAGCAATT
ACCATGTACAATATGTTCAGAAGGACTAAAAACAAAATGTGGTTGTAAAC
CAGGTTGTGGCGAATGCACATCGATACCAGGCTGGAATTATAGCTTCTGC
TCGAATAAAGTCGAAGGACGCCCGTTAGATTAGAAACAAGTTTGAAGGAG
GCTCAACGAAAGCTAACAACTGTCATATAACCCTAGATAAATTTGTTGTT
AAATGAGGATTTGAATGATTTTGTAGAGAATATAGCTTATATTTGATGTA
CTTGttactgtacacgttttttattagaacatccaccatctttgaagact
tcagatgttcttaacttttttagtactaagcccaaaaatgttcttaacat
gttcttaatttcac Coding sequence (CDS) from alignment at sc0000001:314485..318198+ >TCONS_00000011 ID=TCONS_00000011|Name=TCONS_00000011|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000001:314485..318198+ (Clytia hemisphaerica)
ATgaactttttgaaattagttGTAACACTTTTGGCAACCATTGCGTTGAT
CAATGAAAGTGAAGCAATGCCACCGCCACCACCGCCGCCATCTAATCAAC
AACAATCTCAGCAACAACAAGAACAAACCCAACAACAGCAAGAACAAACT
CAAGAACAGCAGCAACAAACACAACAACAATCATCAGATCAACAGTTAGT
TCAACCAGCGCAAATCTCACAAGTTACAAGCGAAGAAGCACCGGAATGCC
CAATGGAGCAATTACCATGTACAATATGTTCAGAAGGACTAAAAACAAAA
TGTGGTTGTAAACCAGGTTGTGGCGAATGCACATCGATACCAGGCTGGAA
TTATAGCTTCTGCTCGAATAAAGTCGAAGGACGCCCGTTAGATTAGATga
actttttgaaattagttGTAACACTTTTGGCAACCATTGCGTTGATCAAT
GAAAGTGAAGCAATGCCACCGCCACCACCGCCGCCATCTAATCAACAACA
ATCTCAGCAACAACAAGAACAAACCCAACAACAGCAAGAACAAACTCAAG
AACAGCAGCAACAAACACAACAACAATCATCAGATCAACAGTTAGTTCAA
CCAGCGCAAATCTCACAAGTTACAAGCGAAGAAGCACCGGAATGCCCAAT
GGAGCAATTACCATGTACAATATGTTCAGAAGGACTAAAAACAAAATGTG
GTTGTAAACCAGGTTGTGGCGAATGCACATCGATACCAGGCTGGAATTAT
AGCTTCTGCTCGAATAAAGTCGAAGGACGCCCGTTAGATTAGATgaactt
tttgaaattagttGTAACACTTTTGGCAACCATTGCGTTGATCAATGAAA
GTGAAGCAATGCCACCGCCACCACCGCCGCCATCTAATCAACAACAATCT
CAGCAACAACAAGAACAAACCCAACAACAGCAAGAACAAACTCAAGAACA
GCAGCAACAAACACAACAACAATCATCAGATCAACAGTTAGTTCAACCAG
CGCAAATCTCACAAGTTACAAGCGAAGAAGCACCGGAATGCCCAATGGAG
CAATTACCATGTACAATATGTTCAGAAGGACTAAAAACAAAATGTGGTTG
TAAACCAGGTTGTGGCGAATGCACATCGATACCAGGCTGGAATTATAGCT
TCTGCTCGAATAAAGTCGAAGGACGCCCGTTAGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000011-exon-sc0000001-1491911889:314485..314646 | TCONS_00000011-exon-sc0000001-1491911889:314485..314646 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1510915933:314485..314646 | TCONS_00000011-exon-sc0000001-1510915933:314485..314646 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1575043694:314485..314646 | TCONS_00000011-exon-sc0000001-1575043694:314485..314646 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1491911889:315566..315804 | TCONS_00000011-exon-sc0000001-1491911889:315566..315804 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1510915933:315566..315804 | TCONS_00000011-exon-sc0000001-1510915933:315566..315804 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1575043694:315566..315804 | TCONS_00000011-exon-sc0000001-1575043694:315566..315804 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1491911889:317815..318198 | TCONS_00000011-exon-sc0000001-1491911889:317815..318198 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1510915933:317815..318198 | TCONS_00000011-exon-sc0000001-1510915933:317815..318198 | Clytia hemisphaerica | exon |
| TCONS_00000011-exon-sc0000001-1575043694:317815..318198 | TCONS_00000011-exon-sc0000001-1575043694:317815..318198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:314485..318198 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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