TCONS_00044852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044852
Unique NameTCONS_00044852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044852 ID=TCONS_00044852|Name=TCONS_00044852|organism=Clytia hemisphaerica|type=transcript|length=532bp
tcagaatAAATACGAAACAAAACAAaggaccaaccaatcagaatgtCTAA
TTCTCCATCACAATATTCTTACTCGTCCCAATCCTCCGTTTATTCCGACG
ACGACATCACTAACGGAATTTATTTCGACGACGTATACGACATGTCGGTT
TTCTTGTATAAAGGCCAATTCGGTGACACCTATAGATGCATCGAAAGAGA
AAGTGGCAATAAATATGCAGTCAAGATTCTACCAAAAGCTGGCACAGGAT
ACGAAAACCCGGGCGTTCGTTTTTCAAGAGAGGGCACCATATGGCGTAGA
TTGAAACATAAGAATGTGATAGAATTGGTTCGAATTTTCAATACGCCCAA
AGAACAGTTCTTAGTGACCGAATTCGTTAAAGATGGTAAACTGTTTGACC
AATTGCCAAGTTATACGACCTACACAGAGCGTGATGCAGCCTTCTTCATG
AAGCAATTATTCGAAGGGTTGTCATATTTACGTAAACGGCGCGTCGTGCA
CCGTTGCTTAACAACAGAAAATATCTGGCTTA
Run BLAST on NCBI

protein sequence of TCONS_00044852-protein

>TCONS_00044852-protein ID=TCONS_00044852-protein|Name=TCONS_00044852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MSNSPSQYSYSSQSSVYSDDDITNGIYFDDVYDMSVFLYKGQFGDTYRCI
ERESGNKYAVKILPKAGTGYENPGVRFSREGTIWRRLKHKNVIELVRIFN
TPKEQFLVTEFVKDGKLFDQLPSYTTYTERDAAFFMKQLFEGLSYLRKRR
VVHRCLTTENIWL
Run BLAST on NCBI

transcript from alignment at sc0006322:1..532

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044852 ID=TCONS_00044852|Name=TCONS_00044852|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0006322:1..532 (Clytia hemisphaerica)
TAAGCCAGATATTTTCTGTTGTTAAGCAACGGTGCACGACGCGCCGTTTA
CGTAAATATGACAACCCTTCGAATAATTGCTTCATGAAGAAGGCTGCATC
ACGCTCTGTGTAGGTCGTATAACTTGGCAATTGGTCAAACAGTTTACCAT
CTTTAACGAATTCGGTCACTAAGAACTGTTCTTTGGGCGTATTGAAAATT
CGAACCAATTCTATCACATTCTTATGTTTCAATCTACGCCATATGGTGCC
CTCTCTTGAAAAACGAACGCCCGGGTTTTCGTATCCTGTGCCAGCTTTTG
GTAGAATCTTGACTGCATATTTATTGCCACTTTCTCTTTCGATGCATCTA
TAGGTGTCACCGAATTGGCCTTTATACAAGAAAACCGACATGTCGTATAC
GTCGTCGAAATAAATTCCGTTAGTGATGTCGTCGTCGGAATAAACGGAGG
ATTGGGACGAGTAAGAATATTGTGATGGAGAATTAGacattctgattggt
tggtcctTTGTTTTGTTTCGTATTTattctga

Coding sequence (CDS) from alignment at sc0006322:1..532

>TCONS_00044852 ID=TCONS_00044852|Name=TCONS_00044852|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0006322:1..532 (Clytia hemisphaerica)
AAGCCAGATATTTTCTGTTGTTAAGCAACGGTGCACGACGCGCCGTTTAC
GTAAATATGACAACCCTTCGAATAATTGCTTCATGAAGAAGGCTGCATCA
CGCTCTGTGTAGGTCGTATAACTTGGCAATTGGTCAAACAGTTTACCATC
TTTAACGAATTCGGTCACTAAGAACTGTTCTTTGGGCGTATTGAAAATTC
GAACCAATTCTATCACATTCTTATGTTTCAATCTACGCCATATGGTGCCC
TCTCTTGAAAAACGAACGCCCGGGTTTTCGTATCCTGTGCCAGCTTTTGG
TAGAATCTTGACTGCATATTTATTGCCACTTTCTCTTTCGATGCATCTAT
AGGTGTCACCGAATTGGCCTTTATACAAGAAAACCGACATGTCGTATACG
TCGTCGAAATAAATTCCGTTAGTGATGTCGTCGTCGGAATAAACGGAGGA
TTGGGACGAGTAAGAATATTGTGATGGAGAATTAGacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028456XLOC_028456Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044852-proteinTCONS_00044852-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044852-exon-sc0006322-1491911889:1..532TCONS_00044852-exon-sc0006322-1491911889:1..532Clytia hemisphaericaexon
TCONS_00044852-exon-sc0006322-1510915933:1..532TCONS_00044852-exon-sc0006322-1510915933:1..532Clytia hemisphaericaexon
TCONS_00044852-exon-sc0006322-1575043694:1..532TCONS_00044852-exon-sc0006322-1575043694:1..532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006322supercontigsc0006322:1..532 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.860684	1.00735	0.250924	0	7.63123	4.23376	3.85651	5.97306	5.62001	4.13324	2.6795	2.06883	2.75469	1.83725	3.25969	1.77755	9.10758	21.073	6.31938	5.88547	12.0198	10.3823	5.05113	6.98124	2.13229	1.5315	0.152824	0	4.44573	3.64994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00044852 vs. Swiss-Prot (Human)
Match: DCLK2 (Serine/threonine-protein kinase DCLK2 OS=Homo sapiens GN=DCLK2 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.568e-20
Identity = 52/133 (39.10%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:  136 YDMSVFLYKGQFGDTYRCIERESGNKYAVKILPKAGT-GYENPGVRFSREGTIWRRLKHKNVIELVRIFNTPKEQFLVTEFVKDGKLFDQLPSYTTYTERDAAFFMKQLFEGLSYLRKRRVVHRCLTTENIWL 531
            Y +   +  G F     CI+R +G ++A+KI+ KA   G E+       E +I RR+KH N+I LV    T  E FLV E VK G LFD + S T YTERD +  +  L   L YL    +VHR +  EN+ +
Sbjct:  394 YKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDKAKCCGKEH---LIENEVSILRRVKHPNIIMLVEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHGLSIVHRDIKPENLLV 523
The following BLAST results are available for this feature:
BLAST of TCONS_00044852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCLK21.568e-2039.10Serine/threonine-protein kinase DCLK2 OS=Homo sapi... [more]
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