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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044747 ID=TCONS_00044747|Name=TCONS_00044747|organism=Clytia hemisphaerica|type=transcript|length=2331bp
CTTTAGCATTTGACTTACCATACGAGATGTTTTGGGTGAAGCATTAACAA
AGTCTTTGAGGtgctttgtaaaaaaaaagctGCCATTTTTTAGAAAAGGA
TTACTTTTGATTGTGGGTGACAATAATTGACTTCTGAATTTAGTTTACAT
ATCTTCATCATTTGAATGATAGACCTTCGAAAGGAAAATTATTATTCAGC
TTCACCTTTAATGATATGTTTAATACTgtagttttattttcaaactattt
AACTAGTTGCTAAAAGTGATGAAAATTGACTTACTGCTGCTTACTGAAGT
CCTTGCATTGCATATCTTTTTATCAGTTTTAATCAACATTACTCTTTCTG
AAGAAAACAAACCTTTACTCGTGACAACTAGACCAATTAGTTATTATTTT
GTTTGAGTTCTTGTGTTCTTGtagtaatttcaattttaaaggtATATATA
AGTGTCCAGATTTGACTTACTTTTGACATATTACTTTGGAAGTCATTGCA
TTGGCaataaaatcgaatgtttacagAAATCGAATGTCAACTAGAAtgtg
tacaaaaagaaaaaggcaAATTGAAATGTCAAAGGACAAGATTTTATCCT
TGGTTGAATAGCTGTATTTCTTCAGTAATCTAGTAATCCAGTCTCATTTT
ATATCTTTAGATTAAAAAAATAGTCTAATATGAAAACAAAAGCAGAAATT
TGGGTTTGTAAGAATCTTGGTTGCAATAAACAATTTAAGCACATACAAAG
TTTACAGAATCATAAATTGAATTGTGGTGTATCATCCTCAGTTAAATGCC
CAGTATGTTTCAAATCGTTGGCAAGATCTTGGTATCTGAAAAATCACAAG
TGCAAACAGAAAGAGTCACTAGAATGCAGTCAATGCAGCAAAGTATTTCC
CAAAGTGTGGCATCTGAAACGACATATTAAGAATGTACATGCAAAATTAA
AGAAGGAGTTGAAATGCAGCACATGTGAAAGGCGTTCTCAAGACAAGACT
TCTATGACAAACACAAATGTAGTAGTGGTGGAAATAAGgacaataatgaa
aatattaagaAGAAGCAAGagtactttttaattttaaagagaCTGAATGT
GATGACGACTTAGTATTAATTTCAGGCTAAACTAACTGCTATTTTAGACA
AATACTTGTGCATGTTGTAAGACAAAAAGTTCTAACAAACAAAGGTGTCC
TAAACATGATAAATTTTTGTTGTACCTCTTCAGCTTATGGAAACCTTAGA
AAACAAAGAATATCAGGACCAAAATACTCCAAAGAACCGATTTAGAAAGA
GGGTTGGTATAACTATAGTCTAATTCGCCGCTTATCAAAGTTATTTTATC
ATCTTTTCAGATTAATTGGTTACTTAATAATTGGTTATAGTGCATAGGCT
TATCAAAAGTATTCTATTTTTATAGAACATTTCAATGGATAATAGAGAAT
CTCAGAATTCGACAATGGAAATTGCTAGTACTTCTCAAAAGGTTTGTTAA
TAAGATTATTTCAAAGAAGTCTGAACTATACCCTGTTTGTGAATATCGGT
TGATATTTAAGGGCGAGAGAGGtatcaaaagtttattgaatTTTCTCTTC
TTTGTAGATTTTTGAATCTCTTGAGACTACTGAACCAGAAGAAGTAGATG
TCGAAGGTATAGACTTTGAATCAAGTAATGTTTTCTTCTTTGAAGAGGTG
AAATATCCTTTATTCAATTAAAAATGTACCCCAGGTTGGGTAAAGTATAG
TTCTAAGGGAAAACGGCTTCCATACAATTGTGCTTGACAAAAAGAAAGAT
TGTCAGTTGTGTTGATTACCTTGAGGGTTTTGACCATGGAGAAAatagat
ttttcattttgaacacTGAACGTTTTAGGTTTTTCAGTACTTAAAATTTG
GCATAGCAAAATAATGATTCTTTGAATTATCGTTGGATTTTGTGTCGCGG
TAACACTAGGAATTATcgaaagaagaaattgaaaagaTGATGTCAGAACA
TAATTTCGAAGTACTTCTCATGTTCTTTTTTTGGTATTCTTTTATCTCGC
AGACGTACAAAAGAAAATACACCATTGTGCAATGCTCGGGCTCAAAAGTG
AGTAttcaaagttcgattaaaagaATTACTGATTGGATTTGATAACGCGA
ATGAATCTGACATCTGCTTGAAATTTGCGACAAAAATGACATCTTTGGCT
GAAAAAGGTGGTTCTTGCACCGAAGCTGTTTTGGAAAATATTGAGTAGAT
TTAATTTCATGAAAACGAGAAACTTGATTACTCTTaaatttttaaccaat
caaaataacaAGATTTCATACTATATCTCTG Run BLAST on NCBI protein sequence of TCONS_00044747-protein >TCONS_00044747-protein ID=TCONS_00044747-protein|Name=TCONS_00044747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MKTKAEIWVCKNLGCNKQFKHIQSLQNHKLNCGVSSSVKCPVCFKSLARS
WYLKNHKCKQKESLECSQCSKVFPKVWHLKRHIKNVHAKLKKELKCSTCE
RRSQDKTSMTNTNVVVVEIRTIMKILRRSKSTF Run BLAST on NCBI transcript from alignment at sc0006132:53..2383 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044747 ID=TCONS_00044747|Name=TCONS_00044747|organism=Clytia hemisphaerica|type=transcript|length=2331bp|location=Sequence derived from alignment at sc0006132:53..2383 (Clytia hemisphaerica)
CAGAGATATAGTATGAAATCTtgttattttgattggttaaaaatttAAGA
GTAATCAAGTTTCTCGTTTTCATGAAATTAAATCTACTCAATATTTTCCA
AAACAGCTTCGGTGCAAGAACCACCTTTTTCAGCCAAAGATGTCATTTTT
GTCGCAAATTTCAAGCAGATGTCAGATTCATTCGCGTTATCAAATCCAAT
CAGTAATtcttttaatcgaactttgaaTACTCACTTTTGAGCCCGAGCAT
TGCACAATGGTGTATTTTCTTTTGTACGTCTGCGAGATAAAAGAATACCA
AAAAAAGAACATGAGAAGTACTTCGAAATTATGTTCTGACATCAtctttt
caatttcttctttcgATAATTCCTAGTGTTACCGCGACACAAAATCCAAC
GATAATTCAAAGAATCATTATTTTGCTATGCCAAATTTTAAGTACTGAAA
AACCTAAAACGTTCAgtgttcaaaatgaaaaatctatTTTCTCCATGGTC
AAAACCCTCAAGGTAATCAACACAACTGACAATCTTTCTTTTTGTCAAGC
ACAATTGTATGGAAGCCGTTTTCCCTTAGAACTATACTTTACCCAACCTG
GGGTACATTTTTAATTGAATAAAGGATATTTCACCTCTTCAAAGAAGAAA
ACATTACTTGATTCAAAGTCTATACCTTCGACATCTACTTCTTCTGGTTC
AGTAGTCTCAAGAGATTCAAAAATCTACAAAGAAGAGAAAattcaataaa
cttttgataCCTCTCTCGCCCTTAAATATCAACCGATATTCACAAACAGG
GTATAGTTCAGACTTCTTTGAAATAATCTTATTAACAAACCTTTTGAGAA
GTACTAGCAATTTCCATTGTCGAATTCTGAGATTCTCTATTATCCATTGA
AATGTTCTATAAAAATAGAATACTTTTGATAAGCCTATGCACTATAACCA
ATTATTAAGTAACCAATTAATCTGAAAAGATGATAAAATAACTTTGATAA
GCGGCGAATTAGACTATAGTTATACCAACCCTCTTTCTAAATCGGTTCTT
TGGAGTATTTTGGTCCTGATATTCTTTGTTTTCTAAGGTTTCCATAAGCT
GAAGAGGTACAACAAAAATTTATCATGTTTAGGACACCTTTGTTTGTTAG
AACTTTTTGTCTTACAACATGCACAAGTATTTGTCTAAAATAGCAGTTAG
TTTAGCCTGAAATTAATACTAAGTCGTCATCACATTCAGtctctttaaaa
ttaaaaagtactCTTGCTTCTtcttaatattttcattattgtcCTTATTT
CCACCACTACTACATTTGTGTTTGTCATAGAAGTCTTGTCTTGAGAACGC
CTTTCACATGTGCTGCATTTCAACTCCTTCTTTAATTTTGCATGTACATT
CTTAATATGTCGTTTCAGATGCCACACTTTGGGAAATACTTTGCTGCATT
GACTGCATTCTAGTGACTCTTTCTGTTTGCACTTGTGATTTTTCAGATAC
CAAGATCTTGCCAACGATTTGAAACATACTGGGCATTTAACTGAGGATGA
TACACCACAATTCAATTTATGATTCTGTAAACTTTGTATGTGCTTAAATT
GTTTATTGCAACCAAGATTCTTACAAACCCAAATTTCTGCTTTTGTTTTC
ATATTAGACTATTTTTTTAATCTAAAGATATAAAATGAGACTGGATTACT
AGATTACTGAAGAAATACAGCTATTCAACCAAGGATAAAATCTTGTCCTT
TGACATTTCAATTtgcctttttctttttgtacacaTTCTAGTTGACATTC
GATTTctgtaaacattcgattttattGCCAATGCAATGACTTCCAAAGTA
ATATGTCAAAAGTAAGTCAAATCTGGACACTTATATATacctttaaaatt
gaaattactaCAAGAACACAAGAACTCAAACAAAATAATAACTAATTGGT
CTAGTTGTCACGAGTAAAGGTTTGTTTTCTTCAGAAAGAGTAATGTTGAT
TAAAACTGATAAAAAGATATGCAATGCAAGGACTTCAGTAAGCAGCAGTA
AGTCAATTTTCATCACTTTTAGCAACTAGTTaaatagtttgaaaataaaa
ctacAGTATTAAACATATCATTAAAGGTGAAGCTGAATAATAATTTTCCT
TTCGAAGGTCTATCATTCAAATGATGAAGATATGTAAACTAAATTCAGAA
GTCAATTATTGTCACCCACAATCAAAAGTAATCCTTTTCTAAAAAATGGC
agctttttttttacaaagcaCCTCAAAGACTTTGTTAATGCTTCACCCAA
AACATCTCGTATGGTAAGTCAAATGCTAAAG Coding sequence (CDS) from alignment at sc0006132:53..2383 >TCONS_00044747 ID=TCONS_00044747|Name=TCONS_00044747|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0006132:53..2383 (Clytia hemisphaerica)
ttaaaaagtactCTTGCTTCTtcttaatattttcattattgtcCTTATTT
CCACCACTACTACATTTGTGTTTGTCATAGAAGTCTTGTCTTGAGAACGC
CTTTCACATGTGCTGCATTTCAACTCCTTCTTTAATTTTGCATGTACATT
CTTAATATGTCGTTTCAGATGCCACACTTTGGGAAATACTTTGCTGCATT
GACTGCATTCTAGTGACTCTTTCTGTTTGCACTTGTGATTTTTCAGATAC
CAAGATCTTGCCAACGATTTGAAACATACTGGGCATTTAACTGAGGATGA
TACACCACAATTCAATTTATGATTCTGTAAACTTTGTATGTGCTTAAATT
GTTTATTGCAACCAAGATTCTTACAAACCCAAATTTCTGCTTTTGTTTTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044747-exon-sc0006132-1491911889:53..2383 | TCONS_00044747-exon-sc0006132-1491911889:53..2383 | Clytia hemisphaerica | exon |
| TCONS_00044747-exon-sc0006132-1510915933:53..2383 | TCONS_00044747-exon-sc0006132-1510915933:53..2383 | Clytia hemisphaerica | exon |
| TCONS_00044747-exon-sc0006132-1575043694:53..2383 | TCONS_00044747-exon-sc0006132-1575043694:53..2383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006132 | supercontig | sc0006132:53..2383 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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