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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044712 ID=TCONS_00044712|Name=TCONS_00044712|organism=Clytia hemisphaerica|type=transcript|length=2636bp
GACTATCATTGAGGACTACATTTATCtcttaaattttccaaaataattgc
GTATTTTGTCGTTTTTCCTTATACTTAAAAGCTAGTATATTCTAATCTTT
GATTCAGGAATAGGGGTTATATCATCAATGATTTTTAACAATTAACTTTA
AAGTCGATTGTCATTTATAATATTTCACTTGTATCCTAAGAGTCTCGTGT
TGAAAAGAACATCTATTGATGCATTCGCTCactctttttgaaagaaatta
ctcctaattttattttttattacaaacagAAGGAAATCAAACTTTCATTG
CGGGGAATATTCAAAATCATTTCGAATTCTGGAGGGATAATTTACAACca
tcaaaagaaatcttacaAGTCGTCAGGTCAGGCTATAGGATTCCTTTCAA
AAGTTTACCTCCATCTTGTTATGCAAAGAACAATGCATCAAGTCTAAGAA
ACAAAGAATTTGTCGACAAAGCAATTTTGGAGCTATTAAAAAATAGCTGC
ATAAAAGAAGttacaaaaataccattttgtGTTAATCCCTTGACGGTAGC
AGAGAAAAATGGCAAGTTAAGGCTAGTTCTAGATCTACGGTACGTAAACA
AATGTGTGATTACCGAAAAGtttaaatatgaaaatttaatgaCAGTAGCC
GACATAATCGAAAAGGACTATTATTTTATTACTTTCGACTTGAAAAGCGG
TTACCATCACGTACCAATAGATCAAGCATACCAGACCTTTTTAGGTTTTT
CCTGGGTAGTGGATGACACCACAAAGTATTTCGAATTTCTAGTTCTCCCT
TTTGGACTATCAAGTGCTTGTTATTTGTTTACAAAACTGATGAGACCACT
GATTAAAAGATGGCGTTCAAAATCTGTCAGATGTGTGATTTACCTAGACG
ACGGTATCGCCGGGCATAAATCAGAATCAAAGTTAAACGAAATAACTGAA
GAAATGACAAAAGATTTGCGTTCGGCAGGCTTAATGATaaatatcaaaaa
atcacaattaTCTCCATCAAAAACCGGTCAATGGCTAGGCTTTTGTATAG
ACACGtcacaaatgaaattttttgttccaaaagcgaaaattgaaaaattg
aacgaACTAATTCTCAGAACCCTTTGTTTTAAACTTGTTTCTGCACATCA
AATACCTAAAATTGCTGGACATTTGGTTTCCATGGCAATCGCAATAGGGC
CTCTAGTTTACTTGTTCACACGACACATGTACAAATTCATAGAGTCTAGG
GCTTCTTGGTACGGTAAGAGAATAATAGGTGACGATCTAAAACAAGAGCT
CGAATTTTGGCAGATCAATTTAGAAAACTCAAATGGTTACAGTATGAAAC
ACAACCCGACTTGctcaaaaattgtttattcCGACGCAAGCTCAAAAGGT
TACGGTGGCTATACAGTAGAAAAAGGTTCCATGCTAGTAGCAAAAGGGGT
TTTCAAGACCTCGCAGATTAACACCAGCTCGACCTATAGAGAATTATTAG
CGGTCAAATTTATTCTTGAATCTTTTGTCGCCTTTTTGAAAACTGAGTCT
GTCAAGTGGTTCACAGATAATCATAACGTTGTGTCAATAATTAAAAAAGG
AAGTACAAAGATTCATCTACAACAAAAGGCTACAGAAATTTACTGTTACT
GCTTACGGAACGATATTTCTTTAAACCCAGTTTGGATCCCAAGAGATCAA
AATCAGATTTCAGATCACTTTTCAAAAGTCATAGACACAGACAATTGGTC
CATTGATAACGAGTCTTTCTGTTACATTCAAGacaattttggtaaattta
caGCCGATCGTTTCAGTGATAATATGAATAAAAAAGTCGATGTTTTCAAC
TCAGAATCATTTTGTCCAAATTCCAGTGGTGTAGATTGTTTTACTCGTGA
TTGGAAAAACgatttcaattggatttgtccACCAACAAAACTTATCGGTA
AAACCTTGCTTCATTTAAAAAACTGCAAAGCCAAAGGCGTACTGTTCGTT
CCTTTCTGNATTGGATTTGTCCACCAACAAAACTTATCGGTAAAACCTTG
CTTCATTTAAAAAACTGCAAAGCCAAAGGCGTACTGTTCGTTCCTTTCTG
ACCTTCATCGTATTTTTGGCCTTTAATAACAACAGACAACGGAtcatatt
tcgaaaattttataAAGAGCTATCTGGTTTTGGACCCTTAttttcataag
ttttcaaaCTATTATTCCATATTTGACGGTCATGCCAATTTTTATTCATT
AGCCCTACTTGTCGATTTCGATTAGAAATAAATATACTATTGTGCTAAAT
CAACTCCTATTTTTCCTTACACGCTCCTTGATCTCACGACATACATTGTT
CAAGCCGATTCTCGACTGGTTGCAAGACCTTTTCAATGtcatattttttt
tccaaaaaacagGTATGAGAGttatattatattttctttACAGAGGACAA
AGGGGTCTGGAGTCGTATTAATAGCGTTGTTAATCCCGAACTAAAATCAC
TTGCTTCAACTTTACCAAACGTCATCGAATCTGCCTAGGCAAAATCCACG
TTGTCCAAATACAAAAGCGCATGGAAAAAATGGATCGAATGGGTAGACCG
TTATGACGAGTTAAGTGTTTTCCCCGCAGATCCTGC Run BLAST on NCBI protein sequence of TCONS_00044712-protein >TCONS_00044712-protein ID=TCONS_00044712-protein|Name=TCONS_00044712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MTVADIIEKDYYFITFDLKSGYHHVPIDQAYQTFLGFSWVVDDTTKYFEF
LVLPFGLSSACYLFTKLMRPLIKRWRSKSVRCVIYLDDGIAGHKSESKLN
EITEEMTKDLRSAGLMINIKKSQLSPSKTGQWLGFCIDTSQMKFFVPKAK
IEKLNELILRTLCFKLVSAHQIPKIAGHLVSMAIAIGPLVYLFTRHMYKF
IESRASWYGKRIIGDDLKQELEFWQINLENSNGYSMKHNPTCSKIVYSDA
SSKGYGGYTVEKGSMLVAKGVFKTSQINTSSTYRELLAVKFILESFVAFL
KTESVKWFTDNHNVVSIIKKGSTKIHLQQKATEIYCYCLRNDISLNPVWI
PRDQNQISDHFSKVIDTDNWSIDNESFCYIQDNFGKFTADRFSDNMNKKV
DVFNSESFCPNSSGVDCFTRDWKNDFNWICPPTKLIGKTLLHLKNCKAKG
VLFVPFXIGFVHQQNLSVKPCFI Run BLAST on NCBI transcript from alignment at sc0006059:30..2665 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044712 ID=TCONS_00044712|Name=TCONS_00044712|organism=Clytia hemisphaerica|type=transcript|length=2636bp|location=Sequence derived from alignment at sc0006059:30..2665 (Clytia hemisphaerica)
GCAGGATCTGCGGGGAAAACACTTAACTCGTCATAACGGTCTACCCATTC
GATCCATTTTTTCCATGCGCTTTTGTATTTGGACAACGTGGATTTTGCCT
AGGCAGATTCGATGACGTTTGGTAAAGTTGAAGCAAGTGATTTTAGTTCG
GGATTAACAACGCTATTAATACGACTCCAGACCCCTTTGTCCTCTGTaaa
gaaaatataatataaCTCTCATACctgttttttggaaaaaaaatatgaCA
TTGAAAAGGTCTTGCAACCAGTCGAGAATCGGCTTGAACAATGTATGTCG
TGAGATCAAGGAGCGTGTAAGGAAAAATAGGAGTTGATTTAGCACAATAG
TATATTTATTTCTAATCGAAATCGACAAGTAGGGCTAATGAATAAAAATT
GGCATGACCGTCAAATATGGAATAATAGtttgaaaacttatgaaaaTAAG
GGTCCAAAACCAGATAGCTCTTtataaaattttcgaaatatgaTCCGTTG
TCTGTTGTTATTAAAGGCCAAAAATACGATGAAGGTCAGAAAGGAACGAA
CAGTACGCCTTTGGCTTTGCAGTTTTTTAAATGAAGCAAGGTTTTACCGA
TAAGTTTTGTTGGTGGACAAATCCAATNCAGAAAGGAACGAACAGTACGC
CTTTGGCTTTGCAGTTTTTTAAATGAAGCAAGGTTTTACCGATAAGTTTT
GTTGGTggacaaatccaattgaaatcGTTTTTCCAATCACGAGTAAAACA
ATCTACACCACTGGAATTTGGACAAAATGATTCTGAGTTGAAAACATCGA
CTTTTTTATTCATATTATCACTGAAACGATCGGCtgtaaatttaccaaaa
ttgtCTTGAATGTAACAGAAAGACTCGTTATCAATGGACCAATTGTCTGT
GTCTATGACTTTTGAAAAGTGATCTGAAATCTGATTTTGATCTCTTGGGA
TCCAAACTGGGTTTAAAGAAATATCGTTCCGTAAGCAGTAACAGTAAATT
TCTGTAGCCTTTTGTTGTAGATGAATCTTTGTACTTCCTTTTTTAATTAT
TGACACAACGTTATGATTATCTGTGAACCACTTGACAGACTCAGTTTTCA
AAAAGGCGACAAAAGATTCAAGAATAAATTTGACCGCTAATAATTCTCTA
TAGGTCGAGCTGGTGTTAATCTGCGAGGTCTTGAAAACCCCTTTTGCTAC
TAGCATGGAACCTTTTTCTACTGTATAGCCACCGTAACCTTTTGAGCTTG
CGTCGgaataaacaatttttgagCAAGTCGGGTTGTGTTTCATACTGTAA
CCATTTGAGTTTTCTAAATTGATCTGCCAAAATTCGAGCTCTTGTTTTAG
ATCGTCACCTATTATTCTCTTACCGTACCAAGAAGCCCTAGACTCTATGA
ATTTGTACATGTGTCGTGTGAACAAGTAAACTAGAGGCCCTATTGCGATT
GCCATGGAAACCAAATGTCCAGCAATTTTAGGTATTTGATGTGCAGAAAC
AAGTTTAAAACAAAGGGTTCTGAGAATTAGTtcgttcaatttttcaattt
tcgcttttggaacaaaaaatttcatttgtgaCGTGTCTATACAAAAGCCT
AGCCATTGACCGGTTTTTGATGGAGAtaattgtgattttttgatatttAT
CATTAAGCCTGCCGAACGCAAATCTTTTGTCATTTCTTCAGTTATTTCGT
TTAACTTTGATTCTGATTTATGCCCGGCGATACCGTCGTCTAGGTAAATC
ACACATCTGACAGATTTTGAACGCCATCTTTTAATCAGTGGTCTCATCAG
TTTTGTAAACAAATAACAAGCACTTGATAGTCCAAAAGGGAGAACTAGAA
ATTCGAAATACTTTGTGGTGTCATCCACTACCCAGGAAAAACCTAAAAAG
GTCTGGTATGCTTGATCTATTGGTACGTGATGGTAACCGCTTTTCAAGTC
GAAAGTAATAAAATAATAGTCCTTTTCGATTATGTCGGCTACTGtcatta
aattttcatatttaaaCTTTTCGGTAATCACACATTTGTTTACGTACCGT
AGATCTAGAACTAGCCTTAACTTGCCATTTTTCTCTGCTACCGTCAAGGG
ATTAACacaaaatggtatttttgtaaCTTCTTTTATGCAGCTATTTTTTA
ATAGCTCCAAAATTGCTTTGTCGACAAATTCTTTGTTTCTTAGACTTGAT
GCATTGTTCTTTGCATAACAAGATGGAGGTAAACTTTTGAAAGGAATCCT
ATAGCCTGACCTGACGACTtgtaagatttcttttgatgGTTGTAAATTAT
CCCTCCAGAATTCGAAATGATTTTGAATATTCCCCGCAATGAAAGTTTGA
TTTCCTTctgtttgtaataaaaaataaaattaggagtaatttctttcaaa
aagagtGAGCGAATGCATCAATAGATGTTCTTTTCAACACGAGACTCTTA
GGATACAAGTGAAATATTATAAATGACAATCGACTTTAAAGTTAATTGTT
AAAAATCATTGATGATATAACCCCTATTCCTGAATCAAAGATTAGAATAT
ACTAGCTTTTAAGTATAAGGAAAAACGACAAAATACgcaattattttgga
aaatttaagaGATAAATGTAGTCCTCAATGATAGTC Coding sequence (CDS) from alignment at sc0006059:30..2665 >TCONS_00044712 ID=TCONS_00044712|Name=TCONS_00044712|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0006059:30..2665 (Clytia hemisphaerica)
TTAAATGAAGCAAGGTTTTACCGATAAGTTTTGTTGGTGGACAAATCCAA
TNCAGAAAGGAACGAACAGTACGCCTTTGGCTTTGCAGTTTTTTAAATGA
AGCAAGGTTTTACCGATAAGTTTTGTTGGTggacaaatccaattgaaatc
GTTTTTCCAATCACGAGTAAAACAATCTACACCACTGGAATTTGGACAAA
ATGATTCTGAGTTGAAAACATCGACTTTTTTATTCATATTATCACTGAAA
CGATCGGCtgtaaatttaccaaaattgtCTTGAATGTAACAGAAAGACTC
GTTATCAATGGACCAATTGTCTGTGTCTATGACTTTTGAAAAGTGATCTG
AAATCTGATTTTGATCTCTTGGGATCCAAACTGGGTTTAAAGAAATATCG
TTCCGTAAGCAGTAACAGTAAATTTCTGTAGCCTTTTGTTGTAGATGAAT
CTTTGTACTTCCTTTTTTAATTATTGACACAACGTTATGATTATCTGTGA
ACCACTTGACAGACTCAGTTTTCAAAAAGGCGACAAAAGATTCAAGAATA
AATTTGACCGCTAATAATTCTCTATAGGTCGAGCTGGTGTTAATCTGCGA
GGTCTTGAAAACCCCTTTTGCTACTAGCATGGAACCTTTTTCTACTGTAT
AGCCACCGTAACCTTTTGAGCTTGCGTCGgaataaacaatttttgagCAA
GTCGGGTTGTGTTTCATACTGTAACCATTTGAGTTTTCTAAATTGATCTG
CCAAAATTCGAGCTCTTGTTTTAGATCGTCACCTATTATTCTCTTACCGT
ACCAAGAAGCCCTAGACTCTATGAATTTGTACATGTGTCGTGTGAACAAG
TAAACTAGAGGCCCTATTGCGATTGCCATGGAAACCAAATGTCCAGCAAT
TTTAGGTATTTGATGTGCAGAAACAAGTTTAAAACAAAGGGTTCTGAGAA
TTAGTtcgttcaatttttcaattttcgcttttggaacaaaaaatttcatt
tgtgaCGTGTCTATACAAAAGCCTAGCCATTGACCGGTTTTTGATGGAGA
taattgtgattttttgatatttATCATTAAGCCTGCCGAACGCAAATCTT
TTGTCATTTCTTCAGTTATTTCGTTTAACTTTGATTCTGATTTATGCCCG
GCGATACCGTCGTCTAGGTAAATCACACATCTGACAGATTTTGAACGCCA
TCTTTTAATCAGTGGTCTCATCAGTTTTGTAAACAAATAACAAGCACTTG
ATAGTCCAAAAGGGAGAACTAGAAATTCGAAATACTTTGTGGTGTCATCC
ACTACCCAGGAAAAACCTAAAAAGGTCTGGTATGCTTGATCTATTGGTAC
GTGATGGTAACCGCTTTTCAAGTCGAAAGTAATAAAATAATAGTCCTTTT
CGATTATGTCGGCTACTGtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044712-exon-sc0006059-1491911889:30..2665 | TCONS_00044712-exon-sc0006059-1491911889:30..2665 | Clytia hemisphaerica | exon |
| TCONS_00044712-exon-sc0006059-1510915933:30..2665 | TCONS_00044712-exon-sc0006059-1510915933:30..2665 | Clytia hemisphaerica | exon |
| TCONS_00044712-exon-sc0006059-1575043694:30..2665 | TCONS_00044712-exon-sc0006059-1575043694:30..2665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006059 | supercontig | sc0006059:30..2665 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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