TCONS_00044628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044628
Unique NameTCONS_00044628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044628 ID=TCONS_00044628|Name=TCONS_00044628|organism=Clytia hemisphaerica|type=transcript|length=446bp
CTTTCCTTGCCTGGTCATcaccaaatttcatttttatctttattGAACTG
TCCTCTTGACTTTGATCAAGAAGTTGTTGAACAGGATGGCAAGAAGTTTT
TATCAATATCAGTCGACACCATTGAACGattggaaaaactttttggtttt
tgcaatttttatcgCCATCATAGAAATGGAGACATGACACTGATCGCCCC
TTGGGGAATCATGGACAATGTATTTAAAACAACCGTAGTCGTAGAGGAAG
AAGAAGTGCAGTTTACACTTGATGGAAAAGCATTTTTCATTCCgattaaa
atgaagaaaaataattgcTATTTGTCGTTCATTCCATGCAGTGGTCCAGA
CCCTGAAACAGATGAGCTCCCTCCATGGTGTCACAGTGTATCACTCTACC
AATTACTCCCACAAACAAATATAGAAATGATAATTGACAAAATTCC
Run BLAST on NCBI

protein sequence of TCONS_00044628-protein

>TCONS_00044628-protein ID=TCONS_00044628-protein|Name=TCONS_00044628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
LSLPGHHQISFLSLLNCPLDFDQEVVEQDGKKFLSISVDTIERLEKLFGF
CNFYRHHRNGDMTLIAPWGIMDNVFKTTVVVEEEEVQFTLDGKAFFIPIK
MKKNNCYLSFIPCSGPDPETDELPPWCHSVSLYQLLPQTNIEMIIDKI
Run BLAST on NCBI

transcript from alignment at sc0005904:2677..3122

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044628 ID=TCONS_00044628|Name=TCONS_00044628|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at sc0005904:2677..3122 (Clytia hemisphaerica)
GGAATTTTGTCAATTATCATTTCTATATTTGTTTGTGGGAGTAATTGGTA
GAGTGATACACTGTGACACCATGGAGGGAGCTCATCTGTTTCAGGGTCTG
GACCACTGCATGGAATGAACGACAAATAgcaattatttttcttcatttta
atcGGAATGAAAAATGCTTTTCCATCAAGTGTAAACTGCACTTCTTCTTC
CTCTACGACTACGGTTGTTTTAAATACATTGTCCATGATTCCCCAAGGGG
CGATCAGTGTCATGTCTCCATTTCTATGATGGcgataaaaattgcaaaaa
ccaaaaagtttttccaatCGTTCAATGGTGTCGACTGATATTGATAAAAA
CTTCTTGCCATCCTGTTCAACAACTTCTTGATCAAAGTCAAGAGGACAGT
TCaataaagataaaaatgaaatttggtgATGACCAGGCAAGGAAAG

Coding sequence (CDS) from alignment at sc0005904:2677..3122

>TCONS_00044628 ID=TCONS_00044628|Name=TCONS_00044628|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0005904:2677..3122 (Clytia hemisphaerica)
AATTTTGTCAATTATCATTTCTATATTTGTTTGTGGGAGTAATTGGTAGA
GTGATACACTGTGACACCATGGAGGGAGCTCATCTGTTTCAGGGTCTGGA
CCACTGCATGGAATGAACGACAAATAgcaattatttttcttcattttaat
cGGAATGAAAAATGCTTTTCCATCAAGTGTAAACTGCACTTCTTCTTCCT
CTACGACTACGGTTGTTTTAAATACATTGTCCATGATTCCCCAAGGGGCG
ATCAGTGTCATGTCTCCATTTCTATGATGGcgataaaaattgcaaaaacc
aaaaagtttttccaatCGTTCAATGGTGTCGACTGATATTGATAAAAACT
TCTTGCCATCCTGTTCAACAACTTCTTGATCAAAGTCAAGAGGACAGTTC
aataaagataaaaatgaaatttggtgATGACCAGGCAAGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028245XLOC_028245Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044628-exon-sc0005904-1491911889:2677..3122TCONS_00044628-exon-sc0005904-1491911889:2677..3122Clytia hemisphaericaexon
TCONS_00044628-exon-sc0005904-1510915933:2677..3122TCONS_00044628-exon-sc0005904-1510915933:2677..3122Clytia hemisphaericaexon
TCONS_00044628-exon-sc0005904-1575043694:2677..3122TCONS_00044628-exon-sc0005904-1575043694:2677..3122Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044628-proteinTCONS_00044628-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005904supercontigsc0005904:2677..3122 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.192457	0	0	0.156251	0	0	0	0	0	0.27366	0.112376	0	0	0.166517	0	0.211788	0	0	0.321442	0.14344	0	0	0.16615	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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