TCONS_00044611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044611
Unique NameTCONS_00044611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044611 ID=TCONS_00044611|Name=TCONS_00044611|organism=Clytia hemisphaerica|type=transcript|length=719bp
CTTGCCATTGATATCCCAAGAGGGGCCAGTCGTCTGGATGGACAGGGCAT
AAACGAAAAGCGTGTTGGATGTCAATCTTACCCATGAAACAACAAGGGCC
AATCAAACGAACCATTTCGAGAGCTTCATCGAAAGATGTATACTGCACAT
GAGTGAGTTTAGCAGGTATACCATCGTTGACTGAGGAGCCAGGGGGAAAT
GACAGGTCTAGAATGATACGCTTCTTCTCCTTCCTTGTCCTTACTGTATA
TCGTGTGTTGAATATGACGATTTCGTCCTTCCCGTCCTTCCTTGTCCTTA
CTGCCCTTACTGTATATCGTGTGTTGATAAGGGCGATTTCGTCCTTCACT
GTCCTTCATTGTCCTTACTGTCCTTTTTGTCCTTAGTGTATATCGTATGT
TGAATATGGCGATTTCGTCCTTTCTCCCGTCCTTTTGCCTTTCTTGTCAG
CAATTGTGGATTTTACAGGAGGGATTGATGTTTTAAACtattcaaaattt
cactttgtAGAAATTTGATtaactttcagaaaatatatacttttacaggt
ctttttgataaatttaaggaaatatttagccACTactctaaatttttcaa
attctctcAAATTGATTACCGGCCTCAAAGGGTTAAAGCAATTATTACCA
aagagaactaattttcgtTGTAACTAATTTTTGCGTTTCTGGGTGTCtgt
cgcgaaaattagttcccta
Run BLAST on NCBI

transcript from alignment at sc0005875:2326..3044

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044611 ID=TCONS_00044611|Name=TCONS_00044611|organism=Clytia hemisphaerica|type=transcript|length=719bp|location=Sequence derived from alignment at sc0005875:2326..3044 (Clytia hemisphaerica)
tagggaactaattttcgcgacaGACACCCAGAAACGCAAAAATTAGTTAC
AacgaaaattagttctcttTGGTAATAATTGCTTTAACCCTTTGAGGCCG
GTAATCAATTTgagagaatttgaaaaatttagagtAGTggctaaatattt
ccttaaatttatcaaaaagacctgtaaaagtatatattttctgaaagtta
ATCAAATTTCTacaaagtgaaattttgaataGTTTAAAACATCAATCCCT
CCTGTAAAATCCACAATTGCTGACAAGAAAGGCAAAAGGACGGGAGAAAG
GACGAAATCGCCATATTCAACATACGATATACACTAAGGACAAAAAGGAC
AGTAAGGACAATGAAGGACAGTGAAGGACGAAATCGCCCTTATCAACACA
CGATATACAGTAAGGGCAGTAAGGACAAGGAAGGACGGGAAGGACGAAAT
CGTCATATTCAACACACGATATACAGTAAGGACAAGGAAGGAGAAGAAGC
GTATCATTCTAGACCTGTCATTTCCCCCTGGCTCCTCAGTCAACGATGGT
ATACCTGCTAAACTCACTCATGTGCAGTATACATCTTTCGATGAAGCTCT
CGAAATGGTTCGTTTGATTGGCCCTTGTTGTTTCATGGGTAAGATTGACA
TCCAACACGCTTTTCGTTTATGCCCTGTCCATCCAGACGACTGGCCCCTC
TTGGGATATCAATGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028229XLOC_028229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044611-exon-sc0005875-1491911889:2326..3044TCONS_00044611-exon-sc0005875-1491911889:2326..3044Clytia hemisphaericaexon
TCONS_00044611-exon-sc0005875-1510915933:2326..3044TCONS_00044611-exon-sc0005875-1510915933:2326..3044Clytia hemisphaericaexon
TCONS_00044611-exon-sc0005875-1575043694:2326..3044TCONS_00044611-exon-sc0005875-1575043694:2326..3044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005875supercontigsc0005875:2326..3044 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.520838	0.135672	0.157528	0.0770584	1.50098	0.889571	0.447179	0.586101	0.117241	0.217833	0.0704779	0.0463294	0.138795	0.14414	0.158003	0.211952	0.469994	0.214102	0.369741	0.386908	0.538069	0.393677	0.319044	0.362571	0	0.533258	0.190773	0	0.154422	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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