TCONS_00044587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044587
Unique NameTCONS_00044587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044587 ID=TCONS_00044587|Name=TCONS_00044587|organism=Clytia hemisphaerica|type=transcript|length=275bp
NTCCAAGCAAAAGGATACTGCTATCAATGTCTCTTCCCAGGAGCAAGCAT
CTCACATGGGCGACACAAAGAAGGCAAATGTCAACGTGACTTTGCATGTC
CGCACTCATCACATCAAGACTACCCACGTAAACATATCCTTGTCTGTCAC
GATCACAAAGACACGGATGCAAACAAGAAACTCCTCGACAAATACAAGTC
GAAGTACCTGAAGAATCCAAACCTACCACCATTCACAAAGAACATAAGTC
TTTCATTCCATTCGTGCTTCAAAAC
Run BLAST on NCBI

transcript from alignment at sc0005840:6..280

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044587 ID=TCONS_00044587|Name=TCONS_00044587|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0005840:6..280 (Clytia hemisphaerica)
GTTTTGAAGCACGAATGGAATGAAAGACTTATGTTCTTTGTGAATGGTGG
TAGGTTTGGATTCTTCAGGTACTTCGACTTGTATTTGTCGAGGAGTTTCT
TGTTTGCATCCGTGTCTTTGTGATCGTGACAGACAAGGATATGTTTACGT
GGGTAGTCTTGATGTGATGAGTGCGGACATGCAAAGTCACGTTGACATTT
GCCTTCTTTGTGTCGCCCATGTGAGATGCTTGCTCCTGGGAAGAGACATT
GATAGCAGTATCCTTTTGCTTGGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028206XLOC_028206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044587-exon-sc0005840-1491911889:6..280TCONS_00044587-exon-sc0005840-1491911889:6..280Clytia hemisphaericaexon
TCONS_00044587-exon-sc0005840-1510915933:6..280TCONS_00044587-exon-sc0005840-1510915933:6..280Clytia hemisphaericaexon
TCONS_00044587-exon-sc0005840-1575043694:6..280TCONS_00044587-exon-sc0005840-1575043694:6..280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005840supercontigsc0005840:6..280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0201	0.705983	0.598477	0.833841	0	0	0	0.804624	0.445418	1.23202	0	0	0	1.91235	0.473906	0.0838259	0.172193	0	0	0	0	0.747823	0	0	0	1.57954	0	0.31227	1.18229	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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