TCONS_00044557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044557
Unique NameTCONS_00044557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044557 ID=TCONS_00044557|Name=TCONS_00044557|organism=Clytia hemisphaerica|type=transcript|length=671bp
ATTCACGATATacatcactgcaatgtcttcggCATCACACCatagaccca
atagctgattgttTGGAAGTgatgtaaaatcagtcaatatgtCATTTGCA
ACCAATCTTACGACATGATgtgtaatgttagaagacatttcAATGGTGCA
CATCATGAGTAACTACCTCCCCTATACTCGGGCCCGATTCCCTAGTACTG
TATGGGCTAATATAGGTGTGTTTAGCGGTAGATCTATAAAATTGAGTGTT
GTAACGAATCTAAGAAAAATGGTCAGTCATAGCTCGTAGAAAAAAACTTG
ACAAATTCAAATGTATAAATGGACAAATTAATGTTATGCGGCGCTCATCA
TCGCAAGTAATCCAGGAAATATGAATATATTGCTCTCGGAACATTTACAC
TGCTATTGAGttttatctaaaaaatttactttaatttATTGAAAGCATTT
TATTTATACTATTATTATTTAACTTGCCTTTGTTTCACCTCCATCCTGAG
TTTCTTTAGGAGAGACAATTTACAGGCTATCATTTTTGTATCGTGttttg
tcattttcattttttcattttttcatttttcatattttttctgtAACATA
AAATATTTACCTTTTTTATCAGATTGTAAAGTAAGACATTTTCTcataaa
aacatgtattttacaaaatca
Run BLAST on NCBI

transcript from alignment at sc0005781:2270..2940

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044557 ID=TCONS_00044557|Name=TCONS_00044557|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at sc0005781:2270..2940 (Clytia hemisphaerica)
tgattttgtaaaatacatgtttttatgAGAAAATGTCTTACTTTACAATC
TGATAAAAAAGGTAAATATTTTATGTTacagaaaaaatatgaaaaatgaa
aaaatgaaaaaatgaaaatgacaaaaCACGATACAAAAATGATAGCCTGT
AAATTGTCTCTCCTAAAGAAACTCAGGATGGAGGTGAAACAAAGGCAAGT
TAAATAATAATAGTATAAATAAAATGCTTTCAATaaattaaagtaaattt
tttagataaaaCTCAATAGCAGTGTAAATGTTCCGAGAGCAATATATTCA
TATTTCCTGGATTACTTGCGATGATGAGCGCCGCATAACATTAATTTGTC
CATTTATACATTTGAATTTGTCAAGTTTTTTTCTACGAGCTATGACTGAC
CATTTTTCTTAGATTCGTTACAACACTCAATTTTATAGATCTACCGCTAA
ACACACCTATATTAGCCCATACAGTACTAGGGAATCGGGCCCGAGTATAG
GGGAGGTAGTTACTCATGATGTGCACCATTgaaatgtcttctaacattac
acATCATGTCGTAAGATTGGTTGCAAATGacatattgactgattttacat
cACTTCCAaacaatcagctattgggtctatGGTGTGATGccgaagacatt
gcagtgatgtATATCGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028177XLOC_028177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044557-exon-sc0005781-1491911889:2270..2940TCONS_00044557-exon-sc0005781-1491911889:2270..2940Clytia hemisphaericaexon
TCONS_00044557-exon-sc0005781-1510915933:2270..2940TCONS_00044557-exon-sc0005781-1510915933:2270..2940Clytia hemisphaericaexon
TCONS_00044557-exon-sc0005781-1575043694:2270..2940TCONS_00044557-exon-sc0005781-1575043694:2270..2940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005781supercontigsc0005781:2270..2940 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.074884	0	0	0	0.0818328	4.34402	7.85636	8.02415	9.69873	2.87861	8.84771	1.07251	0.371269	9.0262	2.80768	3.11295	2.42255	0	0.0854212	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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