|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044517 ID=TCONS_00044517|Name=TCONS_00044517|organism=Clytia hemisphaerica|type=transcript|length=1059bp
TTTCTGTGTGTGAATCCTTTGTTcatcttttaataaaatttcttttgtct
TAAATTTATTATCATAATAACTACAAATTTCTATTGGGTATAATATTTAC
AAATTCGATTTGGGTTGTATAACAAACAACAACCCCATTatttcttattt
acaaaaaatgttaaatcttTTAGGAAGTAGTATTTACAGTCAAAGTGAAA
GGCAACAGTAAAAATATTATCAGGAAAAACTTCATGAATAAAAAGTCTTC
CTAATTCATCATATCTGACAGGtcgaaattatattgttttgcGTATTCAG
CTTTAATGTGATTTTTTAAAGTCTGTTTCACTAATTTTCGTTCAGTTTCG
TTTCGCTCTGAAACTCCCGTTCGTCGTTCCTTTTGTCGGTTTGACTGTTC
AGAATTAACGAGTGGTGACGAGCGACCTTCGTTAAGCCGAGTTGTTAACT
CGTTTGATGAGCACGCCTCGGTGGATTGAAAAGAGTTGTACTCCTTCTTG
TGTTGGAAACGCCTTAACATGCGGACGGGGAAGGGTGAGTTCTTGCTACT
CTGTTGCTCTTTCTTCATCTCTTTCTTCTCAATATCGTAAACGGCACAAT
TAACAGCGCTTTCGATATCTGTAGTCAACATCTTGTATGTTGCATCAACC
CAAAAAATGTAAGTATATACGGAGAAGTCGATGTTATAAAAACAGCAATT
CTGGTCTTCTAACAGCACAGTAGAGCACAACAATTAAGCGATGACACTTC
AACAGAATCTTCGGACGTACAAAAAGTGCGGTGTGCTTTTCACGTTTCAA
GATGGTGATAGCTTATAATACTTAACGAGAGTACTTTCTCGAGTGGTTGA
ATGCGATGATCTGTTTGATAGGACAACATCTTACCGCTTTTATACACGAT
TTCTCCCCCTTTCTTAATCATGATAATAAAAAGAGAATGGACACGACAAT
AGATCTATTATGAAACGTCAATTAAAAATTAATGCCAGTGTGTTCTCTAT
CTCTACACGCACATTTCTTATAAGAAGTCGTAAATTTTAGCTTACGCTCG
GATGTTCTT Run BLAST on NCBI protein sequence of TCONS_00044517-protein >TCONS_00044517-protein ID=TCONS_00044517-protein|Name=TCONS_00044517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MLTTDIESAVNCAVYDIEKKEMKKEQQSSKNSPFPVRMLRRFQHKKEYNS
FQSTEACSSNELTTRLNEGRSSPLVNSEQSNRQKERRTGVSERNETERKL
VKQTLKNHIKAEYAKQYNFDLSDMMN Run BLAST on NCBI transcript from alignment at sc0005711:1305..2363 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044517 ID=TCONS_00044517|Name=TCONS_00044517|organism=Clytia hemisphaerica|type=transcript|length=1059bp|location=Sequence derived from alignment at sc0005711:1305..2363 (Clytia hemisphaerica)
AAGAACATCCGAGCGTAAGCTAAAATTTACGACTTCTTATAAGAAATGTG
CGTGTAGAGATAGAGAACACACTGGCATTAATTTTTAATTGACGTTTCAT
AATAGATCTATTGTCGTGTCCATTCTCTTTTTATTATCATGATTAAGAAA
GGGGGAGAAATCGTGTATAAAAGCGGTAAGATGTTGTCCTATCAAACAGA
TCATCGCATTCAACCACTCGAGAAAGTACTCTCGTTAAGTATTATAAGCT
ATCACCATCTTGAAACGTGAAAAGCACACCGCACTTTTTGTACGTCCGAA
GATTCTGTTGAAGTGTCATCGCTTAATTGTTGTGCTCTACTGTGCTGTTA
GAAGACCAGAATTGCTGTTTTTATAACATCGACTTCTCCGTATATACTTA
CATTTTTTGGGTTGATGCAACATACAAGATGTTGACTACAGATATCGAAA
GCGCTGTTAATTGTGCCGTTTACGATATTGAGAAGAAAGAGATGAAGAAA
GAGCAACAGAGTAGCAAGAACTCACCCTTCCCCGTCCGCATGTTAAGGCG
TTTCCAACACAAGAAGGAGTACAACTCTTTTCAATCCACCGAGGCGTGCT
CATCAAACGAGTTAACAACTCGGCTTAACGAAGGTCGCTCGTCACCACTC
GTTAATTCTGAACAGTCAAACCGACAAAAGGAACGACGAACGGGAGTTTC
AGAGCGAAACGAAACTGAACGAAAATTAGTGAAACAGACTTTAAAAAATC
ACATTAAAGCTGAATACgcaaaacaatataatttcgaCCTGTCAGATATG
ATGAATTAGGAAGACTTTTTATTCATGAAGTTTTTCCTGATAATATTTTT
ACTGTTGCCTTTCACTTTGACTGTAAATACTACTTCCTAAaagatttaac
attttttgtaaataagaaatAATGGGGTTGTTGTTTGTTATACAACCCAA
ATCGAATTTGTAAATATTATACCCAATAGAAATTTGTAGTTATTATGATA
ATAAATTTAagacaaaagaaattttattaaaagatgAACAAAGGATTCAC
ACACAGAAA Coding sequence (CDS) from alignment at sc0005711:1305..2363 >TCONS_00044517 ID=TCONS_00044517|Name=TCONS_00044517|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0005711:1305..2363 (Clytia hemisphaerica)
ATGTTGACTACAGATATCGAAAGCGCTGTTAATTGTGCCGTTTACGATAT
TGAGAAGAAAGAGATGAAGAAAGAGCAACAGAGTAGCAAGAACTCACCCT
TCCCCGTCCGCATGTTAAGGCGTTTCCAACACAAGAAGGAGTACAACTCT
TTTCAATCCACCGAGGCGTGCTCATCAAACGAGTTAACAACTCGGCTTAA
CGAAGGTCGCTCGTCACCACTCGTTAATTCTGAACAGTCAAACCGACAAA
AGGAACGACGAACGGGAGTTTCAGAGCGAAACGAAACTGAACGAAAATTA
GTGAAACAGACTTTAAAAAATCACATTAAAGCTGAATACgcaaaacaata
taatttcgaCCTGTCAGATATGATGAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044517-exon-sc0005711-1491911889:1305..2363 | TCONS_00044517-exon-sc0005711-1491911889:1305..2363 | Clytia hemisphaerica | exon |
| TCONS_00044517-exon-sc0005711-1510915933:1305..2363 | TCONS_00044517-exon-sc0005711-1510915933:1305..2363 | Clytia hemisphaerica | exon |
| TCONS_00044517-exon-sc0005711-1575043694:1305..2363 | TCONS_00044517-exon-sc0005711-1575043694:1305..2363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005711 | supercontig | sc0005711:1305..2363 . |
Blast
The following BLAST results are available for this feature:
|
