TCONS_00044476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044476
Unique NameTCONS_00044476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044476 ID=TCONS_00044476|Name=TCONS_00044476|organism=Clytia hemisphaerica|type=transcript|length=279bp
CTGAATGCAAGGTTGGTCAACAGTAAGGCAAATCAACTGTTGGATGTTCT
TGAACAAACTCTGACTCTGAATCAAAAGATAAAGTTTCTTCCTGTTCTGG
AGTTCCATTTTTGCCAACCGGTGTTGAAGTGGACGTTTTTGAAATCAAGC
GTTTTATATCTCCAACAACTGCCTCGTCCAATGTCATGTAAACTGAATCC
CGgaagGAATTTGCGTGTCAATGTAGTCAACATACCAGAAACTGATTTGT
CATTGGCTTGTTTAAGGTATTCATATTTT
Run BLAST on NCBI

transcript from alignment at sc0005635:2125..3863-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044476 ID=TCONS_00044476|Name=TCONS_00044476|organism=Clytia hemisphaerica|type=transcript|length=1739bp|location=Sequence derived from alignment at sc0005635:2125..3863- (Clytia hemisphaerica)
CTGAATGCAAGGTTGGTCAACAGTAAGGTAAGTCTTTTAAGACTCCCATA
AATACAGTACAGAACATAAAGTCAAAACTGTTACACCATATATTTTGTAT
ACTGCTACAATACAAACCAGACCCCCGCGCTCGATAGGATCGATCATCGG
AACGGCTCGATTATTTTTTACCGGGGGACACACAGCCCAAAGGTTGTGAA
TTTAAAAAAAAATTGCACATTTTAAAAATCAACTAAGAATTTTTTGGTAC
TTACACTTTCATCAGTAACCAAGTATGTCAGTGACTTGATTTCGTTTAAG
TGCTCTCTGCATTCTCCAAATTTAGATCTTGATATCTTCATTCTTCCTTT
AGCAGGCAAATCAACTGTTGGATGTTCTTGAACAAACTCTGACTCTGAAT
CAAAAGATAAAGTTTCTTCCTGTTCTGGAGTTCCATTTTTGCCAACCGGT
GTTGAAGTGGACGTTTTTGAAATCAAGCGTTTTATATCTCCAACAACTGC
CTCGTCCAATGTCATGTAAACTGAATCCCGGTAGGGGGAGCCGTCCATAT
TCATTTGACAACGCAAAACGTCAAATTGACGTTATGAGGGGGTGGGGGGG
TTTTCAAAAGTTAAGTTTGACGTTATAAGAAATCAAAGGTATACCTTTTT
GTGAAAATCGCGAATATTTGTAACCACCAACCACACTATACTTTATAAGC
TGTCGAAAATGTATTTGTGTATGAATTACATGAAAATATGGTGCTCGCAT
AATCCCATTGGTTCATGCTATGATATCATTACGTCATATTTTCATTGTTT
GCGCGATCGAGCAAACCACATTGCGCAAATGGGTAAAGAAGGTGGTACGT
CTAAAGCATGGCACAGACCTAGCGCCAAGTGGAGCTTTTAATTTCTTTTT
AAATAAAGGTCATTAGTTAAAAGAACACATACACGCACGGGTACAACCAC
GTGCAGACTTTGCGACGGAACGGGAAAACTGTGATGAAAAATGGCTACAA
CTTTTGGTATACATCGCTTGACGTTATCTGTGGGGTGTGGGGGGGTTCAG
AGGATAACGTCAATTTGACGTTATGCGTTGTCAAATGAATATGGACGGGT
CCCCTAGGTCTTTGGAAAAGTATCCCATGTTTCCTTTGTGTGTAAAATAA
TTGCGAACATGTGCTTACATGGCAATTTTGTTTTTCTCCAAGAAAAGCAA
TCACAATGTGGTTTGCGAAGGTCAACTGAATAGGATACATCATTTTCAAA
ACTTTGAATTCTGTAGATGTTTTGTTGCTCCTCAATCCTCGTCTTATTGA
TATCCAACACATTTGCTATGAGCAGTTTGTTTCGACAGTGTTGGACAAGA
TAGCGTGGTCTGTTATGTAGATATTGGGGAATGTATTTACTATATCCTCG
GTGAAGGGAAGAACATACCAAATTTTTGTCCTTGTACCTTAAACAAAAGT
TGAAATTAATCAATCATGCAAACATAATTCAACTCAAAGTAGGTTTTAAA
TTCTTTGGTATTCCTACAAAGATCTTTCCATTTAGGCAGCTGAAGATTTA
AAAACTAAGAACTGAACAAGAAATTACTATTCATTTCTCTATGATAGCTG
CATTGACAATGCCTATTTAAATAGTTTATCAACAACTGTTACTTACTCTT
TATATTTTTCAGGAAGGAATTTGCGTGTCAATGTAGTCAACATACCAGAA
ACTGATTTGTCATTGGCTTGTTTAAGGTATTCATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028107XLOC_028107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044476-exon-sc0005635-1575043694:3837..3863TCONS_00044476-exon-sc0005635-1575043694:3837..3863Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1575043694:3334..3508TCONS_00044476-exon-sc0005635-1575043694:3334..3508Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1575043694:2125..2201TCONS_00044476-exon-sc0005635-1575043694:2125..2201Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1510915933:3837..3863TCONS_00044476-exon-sc0005635-1510915933:3837..3863Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1510915933:3334..3508TCONS_00044476-exon-sc0005635-1510915933:3334..3508Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1510915933:2125..2201TCONS_00044476-exon-sc0005635-1510915933:2125..2201Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1491911889:3837..3863TCONS_00044476-exon-sc0005635-1491911889:3837..3863Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1491911889:3334..3508TCONS_00044476-exon-sc0005635-1491911889:3334..3508Clytia hemisphaericaexon
TCONS_00044476-exon-sc0005635-1491911889:2125..2201TCONS_00044476-exon-sc0005635-1491911889:2125..2201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005635supercontigsc0005635:2125..3863 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.16871	2.85236	0	0.722982	0	1.42092	0.710959	2.45259	1.86987	0	0	0	0	0	0	0	0	0	0	0	0.65586	2.90089	0	0	0	0.566451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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