TCONS_00044341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044341
Unique NameTCONS_00044341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044341 ID=TCONS_00044341|Name=TCONS_00044341|organism=Clytia hemisphaerica|type=transcript|length=572bp
CGAAGTGTTCAAGGTAGTCGTCTGTCGTTTCGCAGTAGCAAACAGTTTAT
CAAGTTCTCTCGTTGCAGCGAGAGTATTCAGTTTTAATGCTTCTGTTTTG
AAGTGTTCGTTTCTAAGTTGCCTCGATCTTTTCCTGATCTTTTTGCGTAA
TTGTTGCAAAGGTTTCTGATCAGCATTTCTCTTAACAAGTTCATCTTTTT
TCGTGTATAGCTCTTTGAGCTTTTCGTCATTTTGCCAAGGTTGGTGCAAT
TTCTGTTTTATGGTTTCAGGTAGTGTCTCTGTAGCAGTGGTTTCAATCGT
TTTGATGATCAAATCGTTTATTTCATCGTTATCAAGATTattaatttgaa
tattttcccAAGAATTGTTGAAATTTGAGATCAAGGTTTCACGAACTTCT
TCTGTATCTAATAAATCATAGTTgagttttttgtgttttgttttaggTTT
CCTTCTTTTAGCACGAGACAGCTTATTTCCTGGACTTTTAATGTTGGCAA
TAACCAGCCGATGATCGCTATCAAAGTCAAAAGAATTATAAACCCTGCAG
TTTGTGCAAAACTGGCGTATCC
Run BLAST on NCBI

protein sequence of TCONS_00044341-protein

>TCONS_00044341-protein ID=TCONS_00044341-protein|Name=TCONS_00044341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
IRQFCTNCRVYNSFDFDSDHRLVIANIKSPGNKLSRAKRRKPKTKHKKLN
YDLLDTEEVRETLISNFNNSWENIQINNLDNDEINDLIIKTIETTATETL
PETIKQKLHQPWQNDEKLKELYTKKDELVKRNADQKPLQQLRKKIRKRSR
QLRNEHFKTEALKLNTLAATRELDKLFATAKRQTTTLNTS
Run BLAST on NCBI

transcript from alignment at sc0005406:777..1348

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044341 ID=TCONS_00044341|Name=TCONS_00044341|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0005406:777..1348 (Clytia hemisphaerica)
GGATACGCCAGTTTTGCACAAACTGCAGGGTTTATAATTCTTTTGACTTT
GATAGCGATCATCGGCTGGTTATTGCCAACATTAAAAGTCCAGGAAATAA
GCTGTCTCGTGCTAAAAGAAGGAAAcctaaaacaaaacacaaaaaactcA
ACTATGATTTATTAGATACAGAAGAAGTTCGTGAAACCTTGATCTCAAAT
TTCAACAATTCTTgggaaaatattcaaattaatAATCTTGATAACGATGA
AATAAACGATTTGATCATCAAAACGATTGAAACCACTGCTACAGAGACAC
TACCTGAAACCATAAAACAGAAATTGCACCAACCTTGGCAAAATGACGAA
AAGCTCAAAGAGCTATACACGAAAAAAGATGAACTTGTTAAGAGAAATGC
TGATCAGAAACCTTTGCAACAATTACGCAAAAAGATCAGGAAAAGATCGA
GGCAACTTAGAAACGAACACTTCAAAACAGAAGCATTAAAACTGAATACT
CTCGCTGCAACGAGAGAACTTGATAAACTGTTTGCTACTGCGAAACGACA
GACGACTACCTTGAACACTTCG

Coding sequence (CDS) from alignment at sc0005406:777..1348

>TCONS_00044341 ID=TCONS_00044341|Name=TCONS_00044341|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at sc0005406:777..1348 (Clytia hemisphaerica)
ATACGCCAGTTTTGCACAAACTGCAGGGTTTATAATTCTTTTGACTTTGA
TAGCGATCATCGGCTGGTTATTGCCAACATTAAAAGTCCAGGAAATAAGC
TGTCTCGTGCTAAAAGAAGGAAAcctaaaacaaaacacaaaaaactcAAC
TATGATTTATTAGATACAGAAGAAGTTCGTGAAACCTTGATCTCAAATTT
CAACAATTCTTgggaaaatattcaaattaatAATCTTGATAACGATGAAA
TAAACGATTTGATCATCAAAACGATTGAAACCACTGCTACAGAGACACTA
CCTGAAACCATAAAACAGAAATTGCACCAACCTTGGCAAAATGACGAAAA
GCTCAAAGAGCTATACACGAAAAAAGATGAACTTGTTAAGAGAAATGCTG
ATCAGAAACCTTTGCAACAATTACGCAAAAAGATCAGGAAAAGATCGAGG
CAACTTAGAAACGAACACTTCAAAACAGAAGCATTAAAACTGAATACTCT
CGCTGCAACGAGAGAACTTGATAAACTGTTTGCTACTGCGAAACGACAGA
CGACTACCTTGAACACTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027974XLOC_027974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044341-exon-sc0005406-1491911889:777..1348TCONS_00044341-exon-sc0005406-1491911889:777..1348Clytia hemisphaericaexon
TCONS_00044341-exon-sc0005406-1510915933:777..1348TCONS_00044341-exon-sc0005406-1510915933:777..1348Clytia hemisphaericaexon
TCONS_00044341-exon-sc0005406-1575043694:777..1348TCONS_00044341-exon-sc0005406-1575043694:777..1348Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044341-proteinTCONS_00044341-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005406supercontigsc0005406:777..1348 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.684144	0.667148	1.21726	1.29917	4.08583	5.41584	5.27745	8.46974	3.04729	3.87658	1.78233	2.73382	3.05502	1.35007	0.110994	0.0595569	0.513584	0.075201	0.103894	0	0	0	0	0	0.209867	1.68571	0.804083	0.858139	0.433912	0.110522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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