TCONS_00044241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044241
Unique NameTCONS_00044241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044241 ID=TCONS_00044241|Name=TCONS_00044241|organism=Clytia hemisphaerica|type=transcript|length=457bp
AGTGTCGATGAAAGCGAAAACAAGCCAGCAATGACGAGTATCTTCAAGAT
GAACGTAATCCAAATGACTTTGGACGATATACCACAATTCAATGGAACCA
gtaatgaaaatatcaaaagctATTTCGAACGTTTCGAGAGCATAGCAACC
ATTGGCAAGTGGAGCTCCAAAGAACGTTTGAACATTCTAACAGCATATGG
CTTACAAGGTCACGCGATGCACTATTACAGAGCGCTACCAGCAGACGTGA
AGCCTTCATACAAACTGATCAAAGAGATGTTGCTGAACTACTTCTGGTCA
TCCGATATCAGAATTTTAAAGAAAGCTGAACTAGCCAAACTCAAACAAGA
AGAATGTTCATCACTAGATATATACCTTGAAAAACTCGAAGAGCTAGTGT
ATCAATTAAATTACAGCAATGAGCAGAAATTGGACTCACTCATCGCCGGA
CTGAATG
Run BLAST on NCBI

protein sequence of TCONS_00044241-protein

>TCONS_00044241-protein ID=TCONS_00044241-protein|Name=TCONS_00044241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
SVDESENKPAMTSIFKMNVIQMTLDDIPQFNGTSNENIKSYFERFESIAT
IGKWSSKERLNILTAYGLQGHAMHYYRALPADVKPSYKLIKEMLLNYFWS
SDIRILKKAELAKLKQEECSSLDIYLEKLEELVYQLNYSNEQKLDSLIAG
LN
Run BLAST on NCBI

transcript from alignment at sc0005227:2980..3436

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044241 ID=TCONS_00044241|Name=TCONS_00044241|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0005227:2980..3436 (Clytia hemisphaerica)
CATTCAGTCCGGCGATGAGTGAGTCCAATTTCTGCTCATTGCTGTAATTT
AATTGATACACTAGCTCTTCGAGTTTTTCAAGGTATATATCTAGTGATGA
ACATTCTTCTTGTTTGAGTTTGGCTAGTTCAGCTTTCTTTAAAATTCTGA
TATCGGATGACCAGAAGTAGTTCAGCAACATCTCTTTGATCAGTTTGTAT
GAAGGCTTCACGTCTGCTGGTAGCGCTCTGTAATAGTGCATCGCGTGACC
TTGTAAGCCATATGCTGTTAGAATGTTCAAACGTTCTTTGGAGCTCCACT
TGCCAATGGTTGCTATGCTCTCGAAACGTTCGAAATagcttttgatattt
tcattacTGGTTCCATTGAATTGTGGTATATCGTCCAAAGTCATTTGGAT
TACGTTCATCTTGAAGATACTCGTCATTGCTGGCTTGTTTTCGCTTTCAT
CGACACT

Coding sequence (CDS) from alignment at sc0005227:2980..3436

>TCONS_00044241 ID=TCONS_00044241|Name=TCONS_00044241|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0005227:2980..3436 (Clytia hemisphaerica)
ATTCAGTCCGGCGATGAGTGAGTCCAATTTCTGCTCATTGCTGTAATTTA
ATTGATACACTAGCTCTTCGAGTTTTTCAAGGTATATATCTAGTGATGAA
CATTCTTCTTGTTTGAGTTTGGCTAGTTCAGCTTTCTTTAAAATTCTGAT
ATCGGATGACCAGAAGTAGTTCAGCAACATCTCTTTGATCAGTTTGTATG
AAGGCTTCACGTCTGCTGGTAGCGCTCTGTAATAGTGCATCGCGTGACCT
TGTAAGCCATATGCTGTTAGAATGTTCAAACGTTCTTTGGAGCTCCACTT
GCCAATGGTTGCTATGCTCTCGAAACGTTCGAAATagcttttgatatttt
cattacTGGTTCCATTGAATTGTGGTATATCGTCCAAAGTCATTTGGATT
ACGTTCATCTTGAAGATACTCGTCATTGCTGGCTTGTTTTCGCTTTCATC
GACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027882XLOC_027882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044241-exon-sc0005227-1491911889:2980..3436TCONS_00044241-exon-sc0005227-1491911889:2980..3436Clytia hemisphaericaexon
TCONS_00044241-exon-sc0005227-1510915933:2980..3436TCONS_00044241-exon-sc0005227-1510915933:2980..3436Clytia hemisphaericaexon
TCONS_00044241-exon-sc0005227-1575043694:2980..3436TCONS_00044241-exon-sc0005227-1575043694:2980..3436Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044241-proteinTCONS_00044241-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005227supercontigsc0005227:2980..3436 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.739764	0.148164	0	0	0.344368	0	0.105086	0	0.134808	1.47418	3.3307	1.89177	1.24421	0.168409	0.931402	3.23022	2.36866	0.499825	0	0.730655	0.772383	0.318118	0.801613	1.1507	1.35682	7.75219	5.65149
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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