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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044234 ID=TCONS_00044234|Name=TCONS_00044234|organism=Clytia hemisphaerica|type=transcript|length=669bp
GGTACATAGAAATCGAAGGGTACAATTTCAACGATCCAGCACCAGATTTG
GATATCCATGGACATTTTACAGCGCTTGTATGGAGGACAACAATACGAGT
TGGTTGTGCCATCACTTCCAGGGAACTATATGGTGGCTTATTCACTTTCA
TTGTATGTCAGTATCTACCCTCTGGTAACGTTAATGGCTTCTTCTTGTCC
AATGTTATGCAGTTGAGGTTTGGAGCGACCATCCCAAGACATCCACGAGA
ACTAGAAGCACCAATAGGATGCATTGACCGTTTTGAGAATTGTAACATGT
GGACCGGCGTCTGTGGACAAACAACATTTCGAACAATGATGGTACAATAT
TGCAAGAAAACCTGTCAAATATGCTAATATAAGAAGAATTTCTGTACAAG
CCTGTACCAGACCCaaacttttgaaataatatTGTCATTGAGGGATAGAA
GTGAGACAAACAGATATTAATAGTGGTACGATGAAAGGAATAGTTTTATA
TGAAGTTACATTAGAATTCGAAGGTTGtgaacattgagtttaaaacccga
agggctagagtagaatctcttaCCTTTcccttatctgatattccgatggc
gtattggcggccgcccacgctaaagctctaaaggagcgggccaatatacc
atcggagagaaatagtagt Run BLAST on NCBI protein sequence of TCONS_00044234-protein >TCONS_00044234-protein ID=TCONS_00044234-protein|Name=TCONS_00044234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
YIEIEGYNFNDPAPDLDIHGHFTALVWRTTIRVGCAITSRELYGGLFTFI
VCQYLPSGNVNGFFLSNVMQLRFGATIPRHPRELEAPIGCIDRFENCNMW
TGVCGQTTFRTMMVQYCKKTCQIC Run BLAST on NCBI transcript from alignment at sc0005209:2481..4564- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044234 ID=TCONS_00044234|Name=TCONS_00044234|organism=Clytia hemisphaerica|type=transcript|length=2084bp|location=Sequence derived from alignment at sc0005209:2481..4564- (Clytia hemisphaerica)
GGTACATAGAAATCGAAGGGTACAATTTCAACGATCCAGCACCAGATTTG
GATATCCATGGACATTTTACAGCGGTAAGTTTTTAAGATTGCAAACATCC
TAAACATCTCAGATACGTAAGGGGAAGACTATTCCAGTTGAAAATTTTGA
AAAAGATTAAATCGGCTCATAAAAAGAATTTTAGCTTTATCTTAGACGAT
CCTATCGTCTACACAAAATCACAATTGATTCAAATTGAGATATGGCTGAG
CATGATTTTTATTNATCGTCTACACAAAATCACAATTGATTCAAATTGAG
ATCTGGCTGAGCATGATTTTTATTTAACATATATGTTGATAGCTTGTATG
GAGGACAACAATACGAGTTGGTTGTGCCATCACTTCCAGGGAACTATATG
GTGGCTTATTCACTTTCATTGTATGTCAGTATCTACCCTCTGGTAACGTT
AATGGCTTCTTCTTGTCCAATGTTATGCAGTTGAGGTTTGGAGGTAAGTA
AGATCAACGGTTAGGAGGAACTTGATTCATAATTTTGTAGTTTGGCTAAG
ACATTCTTATTTAAAGCTGAATATGTGAGAATTTCCATTGGACATAAAGA
AAAAAAGTTTTTGTTCAAAAAGTGTGTAGAGTGAAGACTTCTCAGCCTCC
TCATTTTTGAGCAAATCAGACTTCCTTACTTTTCCTGAACTGAAGCGAAA
AATTTTTATTGAGAAAAAATGTGGTAATGTCGGCTTAGCTTTCATTGGCC
GAAAGTATCAAAATAAGTAAACTACGTAAGTTTTTTAACAAATCAATCAA
AAATCTTATTTTTTGACAAGTTGACAAACAATAAATGAAAACTCGGGTGA
AACAAGGCATGTCCCAAATATATTTTGCGTGACGCACACCGCTTCCCATT
ATCCATTAATTTTCATATATAGCTCAAAAGAATCGTATCAACGAGAGGAT
TTCGAAAAGTGCTGGGTCAAAAATTTACATCAAGCCAATCTCAAGATATC
GGCCAAAAACTGATTTTGACGTTATAAAATACATCGCAAAAACACGTCAA
AAAGACAATTTAAATGACGTCATTATAGAAAAAAGGCGATAATTCCGATT
AACTTACTACAATCAAAGCAAAATTTTGACTGGAGATGTAAATTAACGAT
TCTAAAATATTTCATGAAAAAAAATTTGAAAATTTATGATGACGTCAGCA
TTTTTTGACGTATTTAAATTTTTCCCGACAACAAATGACGTCATTGAAAT
TTTCTGAAAATTTTTGAACAAATATTTCAGAATCATTAATTTACAACTCC
AGTCAAAATTTGGTGTTGATTGCATTAATAAAATTGAAGTTATCGCTGTT
TTTCAATAATGACGTCATTTGAATCTTACTTATGACGTGTTTTTTCGTTG
TATTTTATAACGTCAAAATCGATTTTTGACCGATATCTTGAGATTGGCTT
AATGCAAATTTTTGACCCAGCATTTTTCGAAATCCGCTCGTCGATATGAT
TCTTTTGAGCTATATATGAGCGTTAAGGAATCATTGGAAGCGGTGCGCGT
CATGCAAAATATATTTGGGACATGCCTTGTTTCACCCGAGAATGAATGAA
GGCAGAAAAAATATCAAGAAACGCCTCTTTTCACTTTTAGCGACCATCCC
AAGACATCCACGAGAACTAGAAGCACCAATAGGATGCATTGACCGTTTTG
AGAATTGTAACATGTGGACCGGCGTCTGTGGACAAACAACATTTCGAACA
ATGATGGTACAATATTGCAAGAAAACCTGTCAAATATGCTAATATAAGAA
GAATTTCTGTACAAGCCTGTACCAGACCCAAACTTTTGAAATAATATTGT
CATTGAGGGATAGAAGTGAGACAAACAGATATTAATAGTGGTACGATGAA
AGGAATAGTTTTATATGAAGTTACATTAGAATTCGAAGGTTGTGAACATT
GAGTTTAAAACCCGAAGGGCTAGAGTAGAATCTCTTACCTTTCCCTTATC
TGATATTCCGATGGCGTATTGGCGGCCGCCCACGCTAAAGCTCTAAAGGA
GCGGGCCAATATACCATCGGAGAGAAATAGTAGT Coding sequence (CDS) from alignment at sc0005209:2481..4564- >TCONS_00044234 ID=TCONS_00044234|Name=TCONS_00044234|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0005209:2481..4564- (Clytia hemisphaerica)
CGACCATCCCAAGACATCCACGAGAACTAGAAGCACCAATAGGATGCATT
GACCGTTTTGAGAATTGTAACATGTGGACCGGCGTCTGTGGACAAACAAC
ATTTCGAACAATGATGGTACAATATTGCAAGAAAACCTGTCAAATATGCT
AACTTGTATGGAGGACAACAATACGAGTTGGTTGTGCCATCACTTCCAGG
GAACTATATGGTGGCTTATTCACTTTCATTGTATGTCAGTATCTACCCTC
TGGTAACGTTAATGGCTTCTTCTTGTCCAATGTTATGCAGTTGAGGTTTG
GAGTACATAGAAATCGAAGGGTACAATTTCAACGATCCAGCACCAGATTT
GGATATCCATGGACATTTTACAGCGCGACCATCCCAAGACATCCACGAGA
ACTAGAAGCACCAATAGGATGCATTGACCGTTTTGAGAATTGTAACATGT
GGACCGGCGTCTGTGGACAAACAACATTTCGAACAATGATGGTACAATAT
TGCAAGAAAACCTGTCAAATATGCTAACTTGTATGGAGGACAACAATACG
AGTTGGTTGTGCCATCACTTCCAGGGAACTATATGGTGGCTTATTCACTT
TCATTGTATGTCAGTATCTACCCTCTGGTAACGTTAATGGCTTCTTCTTG
TCCAATGTTATGCAGTTGAGGTTTGGAGTACATAGAAATCGAAGGGTACA
ATTTCAACGATCCAGCACCAGATTTGGATATCCATGGACATTTTACAGCG
CGACCATCCCAAGACATCCACGAGAACTAGAAGCACCAATAGGATGCATT
GACCGTTTTGAGAATTGTAACATGTGGACCGGCGTCTGTGGACAAACAAC
ATTTCGAACAATGATGGTACAATATTGCAAGAAAACCTGTCAAATATGCT
AACTTGTATGGAGGACAACAATACGAGTTGGTTGTGCCATCACTTCCAGG
GAACTATATGGTGGCTTATTCACTTTCATTGTATGTCAGTATCTACCCTC
TGGTAACGTTAATGGCTTCTTCTTGTCCAATGTTATGCAGTTGAGGTTTG
GAGTACATAGAAATCGAAGGGTACAATTTCAACGATCCAGCACCAGATTT
GGATATCCATGGACATTTTACAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044234-exon-sc0005209-1575043694:4491..4564 | TCONS_00044234-exon-sc0005209-1575043694:4491..4564 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1575043694:4072..4222 | TCONS_00044234-exon-sc0005209-1575043694:4072..4222 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1575043694:2481..2924 | TCONS_00044234-exon-sc0005209-1575043694:2481..2924 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1510915933:4491..4564 | TCONS_00044234-exon-sc0005209-1510915933:4491..4564 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1510915933:4072..4222 | TCONS_00044234-exon-sc0005209-1510915933:4072..4222 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1510915933:2481..2924 | TCONS_00044234-exon-sc0005209-1510915933:2481..2924 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1491911889:4491..4564 | TCONS_00044234-exon-sc0005209-1491911889:4491..4564 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1491911889:4072..4222 | TCONS_00044234-exon-sc0005209-1491911889:4072..4222 | Clytia hemisphaerica | exon |
| TCONS_00044234-exon-sc0005209-1491911889:2481..2924 | TCONS_00044234-exon-sc0005209-1491911889:2481..2924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005209 | supercontig | sc0005209:2481..4564 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005576 |
extracellular region |
Blast
The following BLAST results are available for this feature:
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