TCONS_00044080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044080
Unique NameTCONS_00044080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044080 ID=TCONS_00044080|Name=TCONS_00044080|organism=Clytia hemisphaerica|type=transcript|length=1132bp
TTCCAGAATACCAACTAaataccaaaattaaaaaataaaataaaaacaat
aaaattactACAGAATTTTAAGAGGttatagaaaaataatttacagaaaa
ataaacgtaaaataatttctgaaaaaaatactgATACTTTTCTCCAGTAA
AACTTTATAATACATTACACAATTAGGGTTAAAAGGGCTAAAACTCACCA
GAATTCATTAAAGGATTGGAGACGAAACCAAAAGCAACATAGTGTAAATC
TAGTTTaaagtttgttgtttttaacTCACACGAGAATTCTCCTTTGACAA
ATTTTATTCGGATGCAAATAGATTGAGAATAATATGCCATTTGTAGGGCA
GAGTCACAGATAAATTATATAAAATACCAGATGTAGCTTCTCCGTCCCTA
ACTGAAGCAAAATGATGCGCCATCTTTAGTTTAATAACGTCACAATTTTT
GCTTGCGCGAGCTATGAAATTTTTGAAGTAGCGGTAGTATCAAAAGTGAA
AACAAGGTCAACTTTCATAACAAATAAcgctttattttgcttcacctgcc
aTGACCTGGGAAAGGTAAGACCACCTGTAGTATTTTATATATGATATCTG
TGGGTGGGatataaaaatgattaaaagttGTGGAAAGCTGATTGGTGATA
TAAAACataaaaggtgtaaaaaatattcataaaaaaaggTTGCATGGTGT
GTTGATGATTTGAAGGATGTGGTCATTGAAGGGGAATGCATAAATTAGGC
TTTTCTTACCAAAAGACAATCCTACTGGATGTTGGTCACCAAAAGAGTGG
ATGTTGCCGTGATTCATAGTACTGTATCGACATCCTCAAGGAGGATAAGT
ATTTCATTAAAACACTAACTTAATCCATATAAAAACCAGTGAATCTCAGG
GCTTCATTTGGTAACATCTGtctattttctttcattgagatGATTCCATC
TAAATTACGTGTAGACTGGGACTTGCGCCAGGTTTAGATATGTGTGAGGT
GTAGAGAGGGCTTAAGACCCGGTCATGCCAGTATACGGGCCTTCCAGGCG
CAAATACTGTAACGAAACGAAATGAAAAGATGTCAAACAAGAGCTAACTA
TATTCAGGTATCTCTTCAacgtcttctgacat
Run BLAST on NCBI

transcript from alignment at sc0004934:682..2083-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044080 ID=TCONS_00044080|Name=TCONS_00044080|organism=Clytia hemisphaerica|type=transcript|length=1402bp|location=Sequence derived from alignment at sc0004934:682..2083- (Clytia hemisphaerica)
TTCCAGAATACCAACTAAATACCAAAATTAAAAAATAAAATAAAAACAAT
AAAATTACTACAGAATTTTAAGAGGTTATAGAAAAATAATTTACAGAAAA
ATAAACGTAAAATAATTTCTGAAAAAAATACTGATACTTTTCTCCAGTAA
AACTTTATAATACATTACACAATTAGGGTTAAAAGGGCTAAAACTCACCA
GAATTCATTAAAGGATTGGAGACGAAACCAAAAGCAACATAGTGTAAATC
TAGTTTAAAGTTTGTTGTTTTTAACTCACACGAGAATTCTCCTTTGACAA
ATTTTATTCGGATGCAAATAGATTGAGAATAATATGCCATTTGTAGGGCA
GAGTCACAGATAAATTATATAAAATACCAGATGTAGCTTCTCCGTCCCTA
ACTGAAGCAAAATGATGCGCCATCTTTAGTTTAATAACGTCACAATTTTT
GCTTGCGCGAGCTATGAAATTTTTGAAGTAGCGGTAGTATCAAAAGTGAA
AACAAGGTCAACTTTCATAACAAATAACGCTTTATTTTGCTTCACCTGCC
ATGACCTGGGAAAGGTAAGACCACCTGTAGTATTTTATATATGATATCTG
TGGGTGGGATATAAAAATGATTAAAAGTTGTGGAAAGCTGATTGGTGATA
TAAAACATAAAAGGTGTAAAAAATATTCATAAAAAAAGGTTGCATGGTGT
GTTGATGATTTGAAGGATGTGGTCATTGAAGGGGAATGCATAAATTAGGC
TTTTCTTACCAAAAGGCAATCCTACTGGATGTCGGTCACCAAAAGACAAT
GCTACTGGATGTTGGTCACCAAAAGGCAATCCTACTGGATGTTGGTGGCC
AAAAGACAATACTACTGGATGTTGGTCACCAAAAGGCAATCCTACTGGAT
GTTGGTCACCAAAAGACAATACTACTGGATGTTGGTCACCAAAAGACAAT
ACTACTGGATGTTGGTCACCAAAAGACAATACTACTGGATGCTGGTCACC
AAAAGACAATACTACTGGATGTTGGTCACCAAAAGACAATCCTACTGGAT
GTTGGTCACCAAAAGAGTGGATGTTGCCGTGATTCATAGTACTGTATCGA
CATCCTCAAGGAGGATAAGTATTTCATTAAAACACTAACTTAATCCATAT
AAAAACCAGTGAATCTCAGGGCTTCATTTGGTAACATCTGTCTATTTTCT
TTCATTGAGATGATTCCATCTAAATTACGTGTAGACTGGGACTTGCGCCA
GGTTTAGATATGTGTGAGGTGTAGAGAGGGCTTAAGACCCGGTCATGCCA
GTATACGGGCCTTCCAGGCGCAAATACTGTAACGAAACGAAATGAAAAGA
TGTCAAACAAGAGCTAACTATATTCAGGTATCTCTTCAACGTCTTCTGAC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027731XLOC_027731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044080-exon-sc0004934-1575043694:1319..2083TCONS_00044080-exon-sc0004934-1575043694:1319..2083Clytia hemisphaericaexon
TCONS_00044080-exon-sc0004934-1575043694:682..1048TCONS_00044080-exon-sc0004934-1575043694:682..1048Clytia hemisphaericaexon
TCONS_00044080-exon-sc0004934-1510915933:1319..2083TCONS_00044080-exon-sc0004934-1510915933:1319..2083Clytia hemisphaericaexon
TCONS_00044080-exon-sc0004934-1510915933:682..1048TCONS_00044080-exon-sc0004934-1510915933:682..1048Clytia hemisphaericaexon
TCONS_00044080-exon-sc0004934-1491911889:1319..2083TCONS_00044080-exon-sc0004934-1491911889:1319..2083Clytia hemisphaericaexon
TCONS_00044080-exon-sc0004934-1491911889:682..1048TCONS_00044080-exon-sc0004934-1491911889:682..1048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004934supercontigsc0004934:682..2083 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.37237	0	0.369592	0.271177	4.74849	3.253	3.71873	5.18022	0.290291	1.01138	0.732216	0.418597	0.630962	0	0.597589	1.22296	1.42638	0.95709	0.964281	0.790078	0.324296	0.900561	0.527465	1.07327	0	0	0.42	0.695873	0.520773	0.315567
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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