TCONS_00044072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044072
Unique NameTCONS_00044072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044072 ID=TCONS_00044072|Name=TCONS_00044072|organism=Clytia hemisphaerica|type=transcript|length=508bp
GGGAAACTTGTGGAGAACATATGTCTTCAGTATACGCGGAGACCACGAAA
TGGAAGATTCCGATGTTACGAATTGATATTTCACACAACGATCAACGTCT
TGTTAtaattttgagattatgacttgggatATTTCACATGACGTTTTGGT
ATCATTTTGAGCTAACTTGTTGAGATATTTCACACGACGTGTCCTGCCTG
GTATGATATTGAGGATTGAGATTATGTCCTTGGGATATTTCACCACGCGA
CGTCCTGGTAtaattttgagattatgactttgGATATTTCACGCGACGTC
CTGGTATAATTTTGACATTATGACTTGGGATATTTCACACGACGTCCTGG
TATgattttgagattatgactttgGATATTTCACGCGACGTCCTGGTATA
GTTCAtaattttgagattatgacttgggatATTTCACACGACGTCCTGGT
ATAATTTTGATATTATgacttcccagctggcacacaacattgtttcaacc
tttatcta
Run BLAST on NCBI

transcript from alignment at sc0004924:3281..3788

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044072 ID=TCONS_00044072|Name=TCONS_00044072|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0004924:3281..3788 (Clytia hemisphaerica)
tagataaaggttgaaacaatgttgtgtgccagctgggaagtcATAATATC
AAAATTATACCAGGACGTCGTGTGAAATatcccaagtcataatctcaaaa
ttaTGAACTATACCAGGACGTCGCGTGAAATATCcaaagtcataatctca
aaatcATACCAGGACGTCGTGTGAAATATCCCAAGTCATAATGTCAAAAT
TATACCAGGACGTCGCGTGAAATATCcaaagtcataatctcaaaattaTA
CCAGGACGTCGCGTGGTGAAATATCCCAAGGACATAATCTCAATCCTCAA
TATCATACCAGGCAGGACACGTCGTGTGAAATATCTCAACAAGTTAGCTC
AAAATGATACCAAAACGTCATGTGAAATatcccaagtcataatctcaaaa
ttaTAACAAGACGTTGATCGTTGTGTGAAATATCAATTCGTAACATCGGA
ATCTTCCATTTCGTGGTCTCCGCGTATACTGAAGACATATGTTCTCCACA
AGTTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027724XLOC_027724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044072-exon-sc0004924-1491911889:3281..3788TCONS_00044072-exon-sc0004924-1491911889:3281..3788Clytia hemisphaericaexon
TCONS_00044072-exon-sc0004924-1510915933:3281..3788TCONS_00044072-exon-sc0004924-1510915933:3281..3788Clytia hemisphaericaexon
TCONS_00044072-exon-sc0004924-1575043694:3281..3788TCONS_00044072-exon-sc0004924-1575043694:3281..3788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004924supercontigsc0004924:3281..3788 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.639683	0.990698	0.218015	0	2.58332	1.32792	1.4535	1.32942	0.226494	0.648114	0	0.0790233	0.0789135	0.163905	1.94237	0.265181	0.283846	0.700646	1.43859	0.284317	0.136345	0.373318	0.312223	0.301959	0.148658	0.341089	0	0	0.146144	0.134179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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