TCONS_00044065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044065
Unique NameTCONS_00044065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044065 ID=TCONS_00044065|Name=TCONS_00044065|organism=Clytia hemisphaerica|type=transcript|length=1289bp
ctttgttcttaaaaaaaggtcttaaaatttaaaaaattcaaatgtttTCT
TGCAATGTGTCAATTTATATTACACCTTACTGttagaaatgtcatcatgc
tcaggGTGTGAATATTTTTAGGTGTCGGAGCTTTGttcattttgaagcta
aataaaagttaggaatttacagaaaatttcatgccaaaagctctattatt
tcaggagttAATATTAGTTTCACCTCCAAACAGAAAAAGCTCCCCCCCca
tagtatgaatagggttaactaggaatacttaaataaaatgttttgtaaat
aaaaaatctaagCTTTGATGATAAGCTTTATACATTGTTGTCTAGGTAAA
GGAGAAAGGAATTCATACATAAGTTTATACAATGACAATTTCAGACGTAA
TTTCTAGATCTAAATTGTATCTTTTTTCAGTTGTCTTGATAATCCTTATC
CATCTTTCTGTATCCAGAAAGCTTCTTTGTTCTCTTTCCAAGAACTTGAT
TCATCTTCATATATTTCTTTCTTCCAAATAGGGACTCTTGCTTTTAGCTC
GTTAATCCCCAATTCAGTTGCTTGGATAGCTTCTTTCCTATGGGTTGAAG
AAACAGCCACTATTACACTTGATTCCTTGACCTGAACCTCACCTAGTCGA
TGCATAATGCAAATATTACCCACATCATAGTTGTTTCGAATCTTTTGGCA
AACATTAACAAGTTCTTTGATTGCCATTGGTTCATAGGCTTCGTAAAATA
GTGTTTTCACAACATTTCCTTTGAAAGAGTTTCTTGTGGTGCCAACAAAA
CAAGATGTGCCACCAGTACACGGTAGAACTATAAAATCAAGAGCCACGTT
AATATCAAGTTTCTCTTTTGTTATAATGATCAATTCTGTGTCTGTTGAAT
GCTTCATTTGCTTCGTATTTTATCCACCACTGATAGGAGGGATAAGTGCT
ATCTCGTCACCCTCTTTGAGACTCAAAGTTTCATCTAAATTATCAATGTA
ATTTTGGTTCAATGCAATTATTAAATTATTTTGTATCTGCTTCAACGTTG
GGTATAATTCCAGAATCTGTTTGATGATGTCTGCTAATTTTATTTGTGAT
GTAAACTCTATGTCAATGGAACTTTTGCTTGTAATCTCTCGTACTTTTGC
AAAGAACAAAACACTGACCCTAACTTTTCCACAGTCCATTTAATAATGAA
ACTTTCTTAAAAAGAAGTGAATTTTTAACTGTTAATAAATCTATTTTCAG
AAAATGAATACCTTAGGGGATAAATTTTTGTGAGCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00044065-protein

>TCONS_00044065-protein ID=TCONS_00044065-protein|Name=TCONS_00044065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MKHSTDTELIIITKEKLDINVALDFIVLPCTGGTSCFVGTTRNSFKGNVV
KTLFYEAYEPMAIKELVNVCQKIRNNYDVGNICIMHRLGEVQVKESSVIV
AVSSTHRKEAIQATELGINELKARVPIWKKEIYEDESSSWKENKEAFWIQ
KDG
Run BLAST on NCBI

transcript from alignment at sc0004909:3150..4438

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044065 ID=TCONS_00044065|Name=TCONS_00044065|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at sc0004909:3150..4438 (Clytia hemisphaerica)
ATTTGCTCACAAAAATTTATCCCCTAAGGTATTCATTTTCTGAAAATAGA
TTTATTAACAGTTAAAAATTCACTTCTTTTTAAGAAAGTTTCATTATTAA
ATGGACTGTGGAAAAGTTAGGGTCAGTGTTTTGTTCTTTGCAAAAGTACG
AGAGATTACAAGCAAAAGTTCCATTGACATAGAGTTTACATCACAAATAA
AATTAGCAGACATCATCAAACAGATTCTGGAATTATACCCAACGTTGAAG
CAGATACAAAATAATTTAATAATTGCATTGAACCAAAATTACATTGATAA
TTTAGATGAAACTTTGAGTCTCAAAGAGGGTGACGAGATAGCACTTATCC
CTCCTATCAGTGGTGGATAAAATACGAAGCAAATGAAGCATTCAACAGAC
ACAGAATTGATCATTATAACAAAAGAGAAACTTGATATTAACGTGGCTCT
TGATTTTATAGTTCTACCGTGTACTGGTGGCACATCTTGTTTTGTTGGCA
CCACAAGAAACTCTTTCAAAGGAAATGTTGTGAAAACACTATTTTACGAA
GCCTATGAACCAATGGCAATCAAAGAACTTGTTAATGTTTGCCAAAAGAT
TCGAAACAACTATGATGTGGGTAATATTTGCATTATGCATCGACTAGGTG
AGGTTCAGGTCAAGGAATCAAGTGTAATAGTGGCTGTTTCTTCAACCCAT
AGGAAAGAAGCTATCCAAGCAACTGAATTGGGGATTAACGAGCTAAAAGC
AAGAGTCCCTATTTGGAAGAAAGAAATATATGAAGATGAATCAAGTTCTT
GGAAAGAGAACAAAGAAGCTTTCTGGATACAGAAAGATGGATAAGGATTA
TCAAGACAACTGAAAAAAGATACAATTTAGATCTAGAAATTACGTCTGAA
ATTGTCATTGTATAAACTTATGTATGAATTCCTTTCTCCTTTACCTAGAC
AACAATGTATAAAGCTTATCATCAAAGcttagattttttatttacaaaac
attttatttaagtattcctagttaaccctattcatactatgGGGGGGGAG
CTTTTTCTGTTTGGAGGTGAAACTAATATTaactcctgaaataatagagc
ttttggcatgaaattttctgtaaattcctaacttttatttagcttcaaaa
tgaaCAAAGCTCCGACACCTAAAAATATTCACACcctgagcatgatgaca
tttctaaCAGTAAGGTGTAATATAAATTGACACATTGCAAGAaaacattt
gaattttttaaattttaagacctttttttaagaacaaag

Coding sequence (CDS) from alignment at sc0004909:3150..4438

>TCONS_00044065 ID=TCONS_00044065|Name=TCONS_00044065|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0004909:3150..4438 (Clytia hemisphaerica)
ATGAAGCATTCAACAGACACAGAATTGATCATTATAACAAAAGAGAAACT
TGATATTAACGTGGCTCTTGATTTTATAGTTCTACCGTGTACTGGTGGCA
CATCTTGTTTTGTTGGCACCACAAGAAACTCTTTCAAAGGAAATGTTGTG
AAAACACTATTTTACGAAGCCTATGAACCAATGGCAATCAAAGAACTTGT
TAATGTTTGCCAAAAGATTCGAAACAACTATGATGTGGGTAATATTTGCA
TTATGCATCGACTAGGTGAGGTTCAGGTCAAGGAATCAAGTGTAATAGTG
GCTGTTTCTTCAACCCATAGGAAAGAAGCTATCCAAGCAACTGAATTGGG
GATTAACGAGCTAAAAGCAAGAGTCCCTATTTGGAAGAAAGAAATATATG
AAGATGAATCAAGTTCTTGGAAAGAGAACAAAGAAGCTTTCTGGATACAG
AAAGATGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027717XLOC_027717Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044065-proteinTCONS_00044065-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044065-exon-sc0004909-1491911889:3150..4438TCONS_00044065-exon-sc0004909-1491911889:3150..4438Clytia hemisphaericaexon
TCONS_00044065-exon-sc0004909-1510915933:3150..4438TCONS_00044065-exon-sc0004909-1510915933:3150..4438Clytia hemisphaericaexon
TCONS_00044065-exon-sc0004909-1575043694:3150..4438TCONS_00044065-exon-sc0004909-1575043694:3150..4438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004909supercontigsc0004909:3150..4438 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1668	10.699	4.00405	3.71605	6.22411	4.65489	7.04071	5.1912	4.85041	3.41824	3.87803	3.52693	2.52566	1.7945	3.31982	3.32436	3.88714	4.7419	1.01535	1.30679	4.7958	5.84226	14.2551	13.5538	6.21033	6.16594	3.52029	2.6263	6.79646	6.80373
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003448Mopterin_biosynth_MoaE
Vocabulary: Biological Process
TermDefinition
GO:0006777Mo-molybdopterin cofactor biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006777 Mo-molybdopterin cofactor biosynthetic process
Blast
[Close]
BLAST of TCONS_00044065 vs. Swiss-Prot (Human)
Match: MOC2B (Molybdopterin synthase catalytic subunit OS=Homo sapiens GN=MOCS2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.274e-41
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = -2 
Query:  464 ELIIITKEKLDINVALDFIVLPCTGGTSCFVGTTRNSFKGNVVKTLFYEAYEPMAIKELVNVCQKIRNNYDVGNICIMHRLGEVQVKESSVIVAVSSTHRKEAIQATELGINELKARVPIWKKEIYEDESSSWKENKEAFW 886
            ++I  T EKL ++     ++ P  G  S FVGTTRN+F+G  V +L YEAY PMA  E+  +C  IR  + V +I + HRLG V V E+S+I+AVSS HR  +++A    I+ LKA+VPIWKKEIYE ESS+WK NKE FW
Sbjct:   45 DVINFTAEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYE-ESSTWKGNKECFW 184
The following BLAST results are available for this feature:
BLAST of TCONS_00044065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOC2B5.274e-4151.06Molybdopterin synthase catalytic subunit OS=Homo s... [more]
back to top