TCONS_00044052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044052
Unique NameTCONS_00044052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044052 ID=TCONS_00044052|Name=TCONS_00044052|organism=Clytia hemisphaerica|type=transcript|length=469bp
TGTTAGCGTTAGCTTGTGATACCGGATCGAATCTTGTGACGTCATTATCG
CCAGAAGGACCAGAGTGTgattacaattttaaaaataatacttTTATGAG
AGACTTTATTGCTCAATATCACCAACAATGTTCAGACTTTCAAACAGTTC
CTGATTTAAAGCCACCCCTTAAATTAAAAAAGAGAGACAAAATTTTATCA
CAACTGGAACAAAAACCTAAAATATCTGAGGTTGTAGTACAGCGATGTCG
TTGTGAGTCTATAATAGAAGATGAAAAGAAAGCCAATAAATTGAATTTCC
TTGGATGTTGGTTACATAAAGGGATAGATGAAGATGAAGTTGAAAAttat
tGGAATGAAAATGTATCTCATTTTttgcaagaaaacaaaaagcaaCTTCA
TCAAAACCCCAACAATGAATGGTCACATTTTCTGGACAATGAAAAATATG
TAGTCTTCAGGAGGAGACT
Run BLAST on NCBI

protein sequence of TCONS_00044052-protein

>TCONS_00044052-protein ID=TCONS_00044052-protein|Name=TCONS_00044052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
LALACDTGSNLVTSLSPEGPECDYNFKNNTFMRDFIAQYHQQCSDFQTVP
DLKPPLKLKKRDKILSQLEQKPKISEVVVQRCRCESIIEDEKKANKLNFL
GCWLHKGIDEDEVENYWNENVSHFLQENKKQLHQNPNNEWSHFLDNEKYV
VFRRR
Run BLAST on NCBI

transcript from alignment at sc0004891:4679..5329-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044052 ID=TCONS_00044052|Name=TCONS_00044052|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0004891:4679..5329- (Clytia hemisphaerica)
TGTTAGCGTTAGCTTGTGATACCGGATCGAATCTTGTGACGTCATTATCG
CCAGAAGGACCAGAGTGTGATTACAATTTTAAAAATAATACTTTTATGAG
AGACTTTATTGCTCAATATCACCAACAATGTTCAGACTTTCAAACAGTTC
CTGATTTAAAGCCACCCCTTAAATTAAAAAAGAGAGACAAAATTTTATCA
CAACTGGAACAAAAACCTAAAATATCTGAGGTTGTAGTACAGCGATGTCG
TTGTGAGTCTATAATAGAAGATGAAAAGAAAGCCAATAAATTGAATTTCC
TTGGATGTTGGTTACATAAAGGGATAGATGAAGATGAAGTTGAAAAGTAA
GTTTATTGTTTAATAATCATAAATTGTTTGTTTATGTTTTTTTAGCAAAA
CACGCTAGTAGTGTAATTGAAAATTGGTAGGGCAAAGTTTCGTTTTGAAT
ATCCCTGAGCGTTTTGATTGAAAGATACAAGAACGATCCTGTTTAAAGGT
AATTGCATTGTCATATTTTTTATTTTAGTTATTGGAATGAAAATGTATCT
CATTTTTTGCAAGAAAACAAAAAGCAACTTCATCAAAACCCCAACAATGA
ATGGTCACATTTTCTGGACAATGAAAAATATGTAGTCTTCAGGAGGAGAC
T

Coding sequence (CDS) from alignment at sc0004891:4679..5329-

>TCONS_00044052 ID=TCONS_00044052|Name=TCONS_00044052|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0004891:4679..5329- (Clytia hemisphaerica)
TTATTGGAATGAAAATGTATCTCATTTTTTGCAAGAAAACAAAAAGCAAC
TTCATCAAAACCCCAACAATGAATGGTCACATTTTCTGGACAATGAAAAA
TATGTAGTCTTCAGGAGGAGATTAGCGTTAGCTTGTGATACCGGATCGAA
TCTTGTGACGTCATTATCGCCAGAAGGACCAGAGTGTGATTACAATTTTA
AAAATAATACTTTTATGAGAGACTTTATTGCTCAATATCACCAACAATGT
TCAGACTTTCAAACAGTTCCTGATTTAAAGCCACCCCTTAAATTAAAAAA
GAGAGACAAAATTTTATCACAACTGGAACAAAAACCTAAAATATCTGAGG
TTGTAGTACAGCGATGTCGTTGTGAGTCTATAATAGAAGATGAAAAGAAA
GCCAATAAATTGAATTTCCTTGGATGTTGGTTACATAAAGGGATAGATGA
AGATGAAGTTGAAAATTATTGGAATGAAAATGTATCTCATTTTTTGCAAG
AAAACAAAAAGCAACTTCATCAAAACCCCAACAATGAATGGTCACATTTT
CTGGACAATGAAAAATATGTAGTCTTCAGGAGGAGATTAGCGTTAGCTTG
TGATACCGGATCGAATCTTGTGACGTCATTATCGCCAGAAGGACCAGAGT
GTGATTACAATTTTAAAAATAATACTTTTATGAGAGACTTTATTGCTCAA
TATCACCAACAATGTTCAGACTTTCAAACAGTTCCTGATTTAAAGCCACC
CCTTAAATTAAAAAAGAGAGACAAAATTTTATCACAACTGGAACAAAAAC
CTAAAATATCTGAGGTTGTAGTACAGCGATGTCGTTGTGAGTCTATAATA
GAAGATGAAAAGAAAGCCAATAAATTGAATTTCCTTGGATGTTGGTTACA
TAAAGGGATAGATGAAGATGAAGTTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027705XLOC_027705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044052-proteinTCONS_00044052-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044052-exon-sc0004891-1575043694:4984..5329TCONS_00044052-exon-sc0004891-1575043694:4984..5329Clytia hemisphaericaexon
TCONS_00044052-exon-sc0004891-1575043694:4679..4801TCONS_00044052-exon-sc0004891-1575043694:4679..4801Clytia hemisphaericaexon
TCONS_00044052-exon-sc0004891-1510915933:4984..5329TCONS_00044052-exon-sc0004891-1510915933:4984..5329Clytia hemisphaericaexon
TCONS_00044052-exon-sc0004891-1510915933:4679..4801TCONS_00044052-exon-sc0004891-1510915933:4679..4801Clytia hemisphaericaexon
TCONS_00044052-exon-sc0004891-1491911889:4984..5329TCONS_00044052-exon-sc0004891-1491911889:4984..5329Clytia hemisphaericaexon
TCONS_00044052-exon-sc0004891-1491911889:4679..4801TCONS_00044052-exon-sc0004891-1491911889:4679..4801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004891supercontigsc0004891:4679..5329 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.09803	4.09373	9.90657	11.2738	5.19713	5.53782	4.82731	2.06701	3.22556	2.14399	0	0	0	0	0	0	0	0	0	0	10.2976	11.9757	0.413664	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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