TCONS_00004303 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004303
Unique Name	TCONS_00004303
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1928

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000041:677511..682502-
coding sequence from alignment at sc0000041:677511..682502-

transcript sequence

>TCONS_00004303 ID=TCONS_00004303|Name=TCONS_00004303|organism=Clytia hemisphaerica|type=transcript|length=1928bp
caaatttttctctttttttgcttttagaCAGACTGAGTTTCAATGGATAT
CAAGTTAAAGTAAAGAAGTGTGAACGCTGGTTTATATGTCTCATGGCTTC
ACTGCGCAGGCgcgtttttgttattttattttggGTCGGTGTATTTGGTA
TTCTAGGAATCCACTTGTTACTTTCAAAAGATCATCAGCAAAACGGGCAC
GGTCACACGAGGAAAAACTTCCCAAGACATCGAACTGTAGATGAAGTAGA
AGAACCAACGGAGAAAATAGTTAATATTCGTTTCGAGCGTTTGGCCAAGG
ATAATCAGCATGAAAATGAGTTTAATAAAAATTCACCACAACTGGGTATC
GGTGAAGAAGATCAAAATGAGGATGAATCGCGGTACATCAATATTACATC
TGacgaaatgtttttgaatgttttggcgGGAAGTCCTAAAGTGAAAATAA
GCCCAACTTTAGAAGAAAACATGAgattaaaagaacaaattgaaaaTCTA
AAACATGAAATCGAGGtcatgaaaaagaacaaaaaacaaTTACAAGAGTT
ATCCAAAAGATTAATAGCTCAACAAAAAGGACAACAATATTTCCCTAAAC
TTGACCCGGCTGTGCCCTGGGTTTTCGCTATAACTCCAACCCACACCAGA
TACACTCAAAAAGCAGATTTGGTCCGTCTGTCACAAACGTTACAACATGT
GACAAACCTTCATTGGATAATTGTAGAAGACTCTAAATCAAGTACTCAAG
TTGTACATAATGTTTTATTAGATTCTGGTCTAAGTTTTACACACTTGTAT
ACAAAGACTCCAGTTGCTATGCAACGAAAACGTGgagaaaaatataacaa
acatCACCGTGGTGTGCCCCAACGAAATTTAGGACTAAAATGGATCCGTC
GAAATATTAAGCCACAGAAGACACCAGGTGTTGTGTATTTTATGGATGAC
GATAATACTTATCACAAGAGGATTTTTGATGAGATGCGTTGGACCCAAAA
AGTATCAGCATGGCCTGTCGCGCTGACAGGAGCGGCCCGTTTCCAAGGAC
CAATTGTATCAAAGGGAAAAGTGATTGGTTTCCATTCTAACTGGGCTTTG
GATCGTAAATTCCCGTTGGACATGGCAGCCTTTGCTGTTAATCTAAAACT
TCTAGTTGAAGATTATCCAGATATTGGATTTGACGAGTCAGCAAAACGAG
GTCATTTGGAGCCGACATTTTTATCGACCATAACGACAATGAATGAGCTG
GAACCGCTGGCTGATAATTGTACTAAAGTTTTGGTTTGGCACACACGAAC
TGACGTTCCAAAGGAAAGCATCCGGGGAGAAAAAGAACTTATACGTCAAG
GAAAACAATCTGACCCTAATATCGAAACATGAGGTGTGGCTtgaaagaaa
acgagtaaaagaaATTTGGATAAGGACAAACCGCCATCACATTAAGGCCG
TCCGCTCGAACTGATTTtgataacacccctgtgtcacaaagcGGCTTTGT
TCCCAAATTTTCGTCATCGGTTGGAAAGATAGCCTACATTTTCAatccca
ctgggaaattgactttgattttatactaatttgaaaatcacaatgtgaaa
aattgcactccaaaaccatctccactaaattttttaagcttggaacaata
taatttttatccccatcgggatttcgatagaaatttttatatccACTGTG
GAAAAACTTTCCCACCGGTGCTGTGAGACAGGATTGTTTGATAATCCACC
ATTCACTTGTATTTTTGTGCATCGATACCTTTCAAAAGTGGTGGTTCAGA
TAATCTGATCATTTAGGAAAAGTCACCTAATCCTAATCTTGATAAAGAGA
TGAAAAGACACAAAGTTCTCaacgaatagacctttttataaattacgtta
cgaacatcacttacctAGTTTTAagatt

Run BLAST on NCBI

protein sequence of TCONS_00004303-protein

>TCONS_00004303-protein ID=TCONS_00004303-protein|Name=TCONS_00004303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
NFSLFLLLDRLSFNGYQVKVKKCERWFICLMASLRRRVFVILFWVGVFGI
LGIHLLLSKDHQQNGHGHTRKNFPRHRTVDEVEEPTEKIVNIRFERLAKD
NQHENEFNKNSPQLGIGEEDQNEDESRYINITSDEMFLNVLAGSPKVKIS
PTLEENMRLKEQIENLKHEIEVMKKNKKQLQELSKRLIAQQKGQQYFPKL
DPAVPWVFAITPTHTRYTQKADLVRLSQTLQHVTNLHWIIVEDSKSSTQV
VHNVLLDSGLSFTHLYTKTPVAMQRKRGEKYNKHHRGVPQRNLGLKWIRR
NIKPQKTPGVVYFMDDDNTYHKRIFDEMRWTQKVSAWPVALTGAARFQGP
IVSKGKVIGFHSNWALDRKFPLDMAAFAVNLKLLVEDYPDIGFDESAKRG
HLEPTFLSTITTMNELEPLADNCTKVLVWHTRTDVPKESIRGEKELIRQG
KQSDPNIET

Run BLAST on NCBI

transcript from alignment at sc0000041:677511..682502-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004303 ID=TCONS_00004303|Name=TCONS_00004303|organism=Clytia hemisphaerica|type=transcript|length=4992bp|location=Sequence derived from alignment at sc0000041:677511..682502- (Clytia hemisphaerica)
CAAATTTTTCTCTTTTTTTGCTTTTAGACAGACTGAGTTTCAATGGATAT
CAAGTTAAAGTAAAGAAGTGTGAACGCTGGTTTATATGTCTCATGGCTTC
ACTGCGCAGGCGCGTTTTTGTTATTTTATTTTGGGTCGGTGTATTTGGTA
TTCTAGGAATCCACTTGTTACTTTCAAAAGATCATCAGCAAAACGGGCAC
GGTCACACGAGGAAAAACTTCCCAAGACATCGAACTGTAGATGAAGTAGA
AGAACCAACGGAGAAAATAGTTAATATTCGTTTCGAGCGTTTGGCCAAGG
ATAATCAGCATGAAAATGAGTTTAATAAAAATTCACCACAACTGGGTATC
GGTGAAGAAGATCAAAATGAGGATGAATCGCGGTACATCAATATTACATC
TGACGAAATGTTTTTGAATGTTTTGGCGGGAAGTCCTAAAGTGAAAATAA
GCCCAACTTTAGAAGAAAACATGAGATTAAAAGAACAAATTGAAAATCTA
AAACATGAAATCGAGGTCATGAAAAAGAACAAAAAACAATTACAAGAGTT
ATCCAAAAGATTAATAGCTCAACAAAAAGGACAACAATATTTCCCTAAAC
TTGACCCGGCTGTGCCCTGGGTTTTCGCTATAACTCCAACCCACACCAGA
TACACTCAAAAAGCAGATTTGGTCCGTCTGTCACAAACGTTACAACATGT
GACAAACCTTCATTGGATAATTGTAGAAGACTCTAAATCAAGTACTCAAG
TTGTACATAATGTTTTATTAGATTCTGGTCTAAGTTTTACACACTTGTAT
ACAAAGACTCCAGTTGCTATGCAACGAAAACGTGGAGAAAAATATAACAA
ACATCACCGTGGTGTGCCCCAACGAAATTTAGGACTAAAATGGATCCGTC
GAAATATTAAGCCACAGAAGACACCAGGTGTTGTGTATTTTATGGATGAC
GATAATACTTATCACAAGAGGATTTTTGATGAGGTATAACCTTTTTATTT
CGGACACTATAGATGGGGTTTATCTAAAGAATCCTACATTTACATAAAAA
TAGACAAAAAGAAAGACAAATTTCGCCGTCCACAACCCCTACGAATCCAT
TTCTCTTTTTTTATCGCGGGAATTAACTACGCATGGTAAGAACGACAGTT
ACGCATGCGTGTTACAATGCAGGATTCTTTTGAGGAACAGAGTGATTTTA
TTGATTCCAGTTCATCGCTGTTTTGAGAAACCGATTGAGGATGTCTGTAC
TAAAGCAATTTCGTGCCAGAGCCACTTGATTTTATTTACTGGGCGTGGTG
TACTAAGGGACTGGGTTTGTGTTTGAGTAGTCAGCTCTTCGCTGGTCTAA
ATCGCTCGTACGATGTATGAGATTTTTTCACCTATCATCCCTTTTTTTCT
CATCATGATAAAGTCTTTATTTATATATGTCCAGTAAAATGATTGTTGTT
CACTTTTAGATGCGTTGGACCCAAAAAGTATCAGCATGGCCTGTCGCGCT
GACAGGAGCGGCCCGTTTCCAAGGACCAATTGTATCAAAGGGAAAAGTGA
TTGGTTTCCATTCTAACTGGGCTTTGGATCGTAAATTCCCGTTGGACATG
GCAGCCTTTGCTGTTAATCTAAAACTTCTAGTTGAAGATTATCCAGATAT
TGGATTTGACGAGTCAGCAAAACGAGGTCATTTGGAGCCGACATTTTTAT
CGACCATAACGACAATGAATGAGCTGGAACCGCTGGCTGATAATTGTACT
AAAGTAAGATTGACATTTAAGAAAACAACATCAAATCTCAAAATGTATAC
GATGCTTTACTTTTTTAATAGTTCTAAGTACCAATTTATGCTTTGAACGA
GAGTTTTACCTTTAAAATGTCGGGAAAAGTGACGAATTTGAAATTTTGGT
CGGGGGAAAGTGACAAAAATACCTCTAGGTGACAAAATTTTCCCCCGACG
AAAAAAAAAAACCGACTAAATAAAACTCCGACATTTTTTTCCCCGACAAG
GTATATTCCTTTTGTCTATTTTAATTTTCTATTTATCTAAAACCATGAAC
TCTTACCTTGTTCTCTTCTAGAATATCTTTCTGACGGTGAATAATTTTTT
ACTAAAGTAAACATGGGAATTTATTGAATATTTCCCCGCTATAAGGGGAA
ATATTAGTTAAAAAGGCATTTCTCCGATCCTTGGCTACTTACGCCCTTTT
TGCGCCCTTAAAGGGGGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAGGTAATAAATAATTCGAAAGTTACTGAAGTCGAGCCCAGT
GCGGTGCGCAAGCCTGGACGGCCTCAAGTTGAAACGTTTTTTTTTTTTCG
ATCAGGCAGTCCATCTGCAAGTGTAAGTGGAAATATTTAGTCGCATTTGT
GCGAATCTTGTCTTAAGTTATAAATGGATGCCGAGAATTTGCTTTACAAA
ACTCATCCATCAAATAGTACTATTGCTTTTGATTATTTTCAGTGGAGCAC
AAAAATTGGAGTATAATTCTCCACTAGGAACGATATTTTTGCCAAGGGGT
TCCCATTCGGTCTGTGAGAGAACGGGTGTAATAGTACTAATCGCTTTTGA
CTATCCAGCGCGCTTGCGCTGTACAAAAATACTCTGAAGTAGCCATCCTA
AGTAATGAAAGAGGAGTCATAAAAACATAAGATAAGGTGAGAAAAAACGA
GATCAAACGAGAGGGGGGCTTATCAGCTACCTGACAGTATAAATTTCAAC
GACGATGAAAAAGAAATATGATATCTGTACCCTGTAATAAAGACCTTAAT
AGTTTTTGTATATAGTAAGATTATGCTTATTATTGTTTCAGGTTTTGGTT
TGGCACACACGAACTGACGTTCCAAAGGAAAGCATCCGGGGAGAAAAAGA
ACTTATACGTCAAGGAAAACAATCTGACCCTAATATCGAAACATGAGGTG
TGGCTTGAAAGAAAACGAGTAAAAGAAATTTGGATAAGGACAAACCGCCA
TCACATTAAGGCCGTCCGCTCGAACTGATTTTGATAACACCCCTGTGTCA
CAAAGCGGCTTTGTTCCCAAATTTTCGTCATCGGTTGGAAAGATAGCCTA
CATTTTCAATCCCACTGGGAAATTGACTTTGATTTTATACTAATTTGAAA
ATCACAATGTGAAAAATTGCACTCCAAAACCATCTCCACTAAATTTTTTA
AGCTTGGAACAATATAATTTTTATCCCCATCGGGATTTCGATAGAAATTT
TTATATCCACTGTGGAAAAACTTTCCCACCGGTGCTGTGAGACAGGATTG
TTTGATAATCCACCATTCACTTGTATTTTTGTGCATCGATACCTTTCAAA
AGTGGTGGTTCAGATAATCTGATCATTTAGGAAAAGTCACCTAATCCTAA
TCTTGATAAAGAGATGAAAAGACACAAAGTTCTCAACGAATAGACCTTTT
TATAAATTACGTTACGAACATCACTTACCTAGTTTTAAGATT

Coding sequence (CDS) from alignment at sc0000041:677511..682502-

>TCONS_00004303 ID=TCONS_00004303|Name=TCONS_00004303|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at sc0000041:677511..682502- (Clytia hemisphaerica)
GTTTTGGTTTGGCACACACGAACTGACGTTCCAAAGGAAAGCATCCGGGG
AGAAAAAGAACTTATACGTCAAGGAAAACAATCTGACCCTAATATCGAAA
CATGAATGCGTTGGACCCAAAAAGTATCAGCATGGCCTGTCGCGCTGACA
GGAGCGGCCCGTTTCCAAGGACCAATTGTATCAAAGGGAAAAGTGATTGG
TTTCCATTCTAACTGGGCTTTGGATCGTAAATTCCCGTTGGACATGGCAG
CCTTTGCTGTTAATCTAAAACTTCTAGTTGAAGATTATCCAGATATTGGA
TTTGACGAGTCAGCAAAACGAGGTCATTTGGAGCCGACATTTTTATCGAC
CATAACGACAATGAATGAGCTGGAACCGCTGGCTGATAATTGTACTAAAA
ATTTTTCTCTTTTTTTGCTTTTAGACAGACTGAGTTTCAATGGATATCAA
GTTAAAGTAAAGAAGTGTGAACGCTGGTTTATATGTCTCATGGCTTCACT
GCGCAGGCGCGTTTTTGTTATTTTATTTTGGGTCGGTGTATTTGGTATTC
TAGGAATCCACTTGTTACTTTCAAAAGATCATCAGCAAAACGGGCACGGT
CACACGAGGAAAAACTTCCCAAGACATCGAACTGTAGATGAAGTAGAAGA
ACCAACGGAGAAAATAGTTAATATTCGTTTCGAGCGTTTGGCCAAGGATA
ATCAGCATGAAAATGAGTTTAATAAAAATTCACCACAACTGGGTATCGGT
GAAGAAGATCAAAATGAGGATGAATCGCGGTACATCAATATTACATCTGA
CGAAATGTTTTTGAATGTTTTGGCGGGAAGTCCTAAAGTGAAAATAAGCC
CAACTTTAGAAGAAAACATGAGATTAAAAGAACAAATTGAAAATCTAAAA
CATGAAATCGAGGTCATGAAAAAGAACAAAAAACAATTACAAGAGTTATC
CAAAAGATTAATAGCTCAACAAAAAGGACAACAATATTTCCCTAAACTTG
ACCCGGCTGTGCCCTGGGTTTTCGCTATAACTCCAACCCACACCAGATAC
ACTCAAAAAGCAGATTTGGTCCGTCTGTCACAAACGTTACAACATGTGAC
AAACCTTCATTGGATAATTGTAGAAGACTCTAAATCAAGTACTCAAGTTG
TACATAATGTTTTATTAGATTCTGGTCTAAGTTTTACACACTTGTATACA
AAGACTCCAGTTGCTATGCAACGAAAACGTGGAGAAAAATATAACAAACA
TCACCGTGGTGTGCCCCAACGAAATTTAGGACTAAAATGGATCCGTCGAA
ATATTAAGCCACAGAAGACACCAGGTGTTGTGTATTTTATGGATGACGAT
AATACTTATCACAAGAGGATTTTTGATGAGGTTTTGGTTTGGCACACACG
AACTGACGTTCCAAAGGAAAGCATCCGGGGAGAAAAAGAACTTATACGTC
AAGGAAAACAATCTGACCCTAATATCGAAACATGAATGCGTTGGACCCAA
AAAGTATCAGCATGGCCTGTCGCGCTGACAGGAGCGGCCCGTTTCCAAGG
ACCAATTGTATCAAAGGGAAAAGTGATTGGTTTCCATTCTAACTGGGCTT
TGGATCGTAAATTCCCGTTGGACATGGCAGCCTTTGCTGTTAATCTAAAA
CTTCTAGTTGAAGATTATCCAGATATTGGATTTGACGAGTCAGCAAAACG
AGGTCATTTGGAGCCGACATTTTTATCGACCATAACGACAATGAATGAGC
TGGAACCGCTGGCTGATAATTGTACTAAAAATTTTTCTCTTTTTTTGCTT
TTAGACAGACTGAGTTTCAATGGATATCAAGTTAAAGTAAAGAAGTGTGA
ACGCTGGTTTATATGTCTCATGGCTTCACTGCGCAGGCGCGTTTTTGTTA
TTTTATTTTGGGTCGGTGTATTTGGTATTCTAGGAATCCACTTGTTACTT
TCAAAAGATCATCAGCAAAACGGGCACGGTCACACGAGGAAAAACTTCCC
AAGACATCGAACTGTAGATGAAGTAGAAGAACCAACGGAGAAAATAGTTA
ATATTCGTTTCGAGCGTTTGGCCAAGGATAATCAGCATGAAAATGAGTTT
AATAAAAATTCACCACAACTGGGTATCGGTGAAGAAGATCAAAATGAGGA
TGAATCGCGGTACATCAATATTACATCTGACGAAATGTTTTTGAATGTTT
TGGCGGGAAGTCCTAAAGTGAAAATAAGCCCAACTTTAGAAGAAAACATG
AGATTAAAAGAACAAATTGAAAATCTAAAACATGAAATCGAGGTCATGAA
AAAGAACAAAAAACAATTACAAGAGTTATCCAAAAGATTAATAGCTCAAC
AAAAAGGACAACAATATTTCCCTAAACTTGACCCGGCTGTGCCCTGGGTT
TTCGCTATAACTCCAACCCACACCAGATACACTCAAAAAGCAGATTTGGT
CCGTCTGTCACAAACGTTACAACATGTGACAAACCTTCATTGGATAATTG
TAGAAGACTCTAAATCAAGTACTCAAGTTGTACATAATGTTTTATTAGAT
TCTGGTCTAAGTTTTACACACTTGTATACAAAGACTCCAGTTGCTATGCA
ACGAAAACGTGGAGAAAAATATAACAAACATCACCGTGGTGTGCCCCAAC
GAAATTTAGGACTAAAATGGATCCGTCGAAATATTAAGCCACAGAAGACA
CCAGGTGTTGTGTATTTTATGGATGACGATAATACTTATCACAAGAGGAT
TTTTGATGAGGTTTTGGTTTGGCACACACGAACTGACGTTCCAAAGGAAA
GCATCCGGGGAGAAAAAGAACTTATACGTCAAGGAAAACAATCTGACCCT
AATATCGAAACATGAATGCGTTGGACCCAAAAAGTATCAGCATGGCCTGT
CGCGCTGACAGGAGCGGCCCGTTTCCAAGGACCAATTGTATCAAAGGGAA
AAGTGATTGGTTTCCATTCTAACTGGGCTTTGGATCGTAAATTCCCGTTG
GACATGGCAGCCTTTGCTGTTAATCTAAAACTTCTAGTTGAAGATTATCC
AGATATTGGATTTGACGAGTCAGCAAAACGAGGTCATTTGGAGCCGACAT
TTTTATCGACCATAACGACAATGAATGAGCTGGAACCGCTGGCTGATAAT
TGTACTAAAAATTTTTCTCTTTTTTTGCTTTTAGACAGACTGAGTTTCAA
TGGATATCAAGTTAAAGTAAAGAAGTGTGAACGCTGGTTTATATGTCTCA
TGGCTTCACTGCGCAGGCGCGTTTTTGTTATTTTATTTTGGGTCGGTGTA
TTTGGTATTCTAGGAATCCACTTGTTACTTTCAAAAGATCATCAGCAAAA
CGGGCACGGTCACACGAGGAAAAACTTCCCAAGACATCGAACTGTAGATG
AAGTAGAAGAACCAACGGAGAAAATAGTTAATATTCGTTTCGAGCGTTTG
GCCAAGGATAATCAGCATGAAAATGAGTTTAATAAAAATTCACCACAACT
GGGTATCGGTGAAGAAGATCAAAATGAGGATGAATCGCGGTACATCAATA
TTACATCTGACGAAATGTTTTTGAATGTTTTGGCGGGAAGTCCTAAAGTG
AAAATAAGCCCAACTTTAGAAGAAAACATGAGATTAAAAGAACAAATTGA
AAATCTAAAACATGAAATCGAGGTCATGAAAAAGAACAAAAAACAATTAC
AAGAGTTATCCAAAAGATTAATAGCTCAACAAAAAGGACAACAATATTTC
CCTAAACTTGACCCGGCTGTGCCCTGGGTTTTCGCTATAACTCCAACCCA
CACCAGATACACTCAAAAAGCAGATTTGGTCCGTCTGTCACAAACGTTAC
AACATGTGACAAACCTTCATTGGATAATTGTAGAAGACTCTAAATCAAGT
ACTCAAGTTGTACATAATGTTTTATTAGATTCTGGTCTAAGTTTTACACA
CTTGTATACAAAGACTCCAGTTGCTATGCAACGAAAACGTGGAGAAAAAT
ATAACAAACATCACCGTGGTGTGCCCCAACGAAATTTAGGACTAAAATGG
ATCCGTCGAAATATTAAGCCACAGAAGACACCAGGTGTTGTGTATTTTAT
GGATGACGATAATACTTATCACAAGAGGATTTTTGATGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002387	XLOC_002387	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004303-protein	TCONS_00004303-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004303-exon-sc0000041-1575043694:681520..682502	TCONS_00004303-exon-sc0000041-1575043694:681520..682502	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1575043694:680750..681043	TCONS_00004303-exon-sc0000041-1575043694:680750..681043	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1575043694:677511..678161	TCONS_00004303-exon-sc0000041-1575043694:677511..678161	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1510915933:681520..682502	TCONS_00004303-exon-sc0000041-1510915933:681520..682502	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1510915933:680750..681043	TCONS_00004303-exon-sc0000041-1510915933:680750..681043	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1510915933:677511..678161	TCONS_00004303-exon-sc0000041-1510915933:677511..678161	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1491911889:681520..682502	TCONS_00004303-exon-sc0000041-1491911889:681520..682502	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1491911889:680750..681043	TCONS_00004303-exon-sc0000041-1491911889:680750..681043	Clytia hemisphaerica	exon
TCONS_00004303-exon-sc0000041-1491911889:677511..678161	TCONS_00004303-exon-sc0000041-1491911889:677511..678161	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000041	supercontig	sc0000041:677511..682502 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14476	0.140983	0.0935228	0.0686402	3.59465	2.68891	6.09082	6.8869	1.92693	0.951034	6.01014	3.75985	4.46507	3.72457	2.81925	6.69706	4.46836	3.91166	0.0658178	0.138409	2.24177	2.02922	1.39506	1.72844	2.11002	2.24351	0.596852	0.273389	0.0460563	0.0233388

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR005027	Glyco_trans_43

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Blast

[Close]

BLAST of TCONS_00004303 vs. Swiss-Prot (Human)
Match: B3GA3 (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens GN=B3GAT3 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 2.488e-85
Identity = 136/265 (51.32%), Postives = 175/265 (66.04%), Query Frame = 3

Query:  612 VPWVFAITPTHTRYTQKADLVRLSQTLQHVTNLHWIIVEDSKSSTQVVHNVLLDSGLSFTHLYTKTPVAMQRKRGEKYNKHHRGVPQRNLGLKWIR---------RNIKPQKTPGVVYFMDDDNTYHKRIFDEMRWTQKVSAWPVALTGAARFQGPIVSKGKVIGFHSNWALDRKFPLDMAAFAVNLKLLVEDYPDIGFDESAKRGHLEPTFLSTITTMNELEPLADNCTKVLVWHTRTDVPKESIRGEKELIRQGKQSDPNIET 1379
            +P ++ +TPT+ R  QKA+LVRLSQTL  V  LHW++VED++  T +V  +L  SGL FTHL   TP A + + GE    H RGV QRN  L W+R         ++  P  T GVVYF DDDNTY + +F+EMRWT+ VS WPV L G  RF+GP V  G+V+GFH+ W   R FP+DMA FAV L LL+ D P+  FD +A RGHLE + LS +    +LEP A NCT+VLVWHTRT+ PK  ++ E++L RQG+ SDP IE 
Sbjct:   74 LPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLL-DKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAANCTRVLVWHTRTEKPK--MKQEEQLQRQGRGSDPAIEV 335

The following BLAST results are available for this feature:

BLAST of TCONS_00004303 vs. Swiss-Prot (Human)

BLAST of TCONS_00004303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B3GA3	2.488e-85	51.32	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]

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TCONS_00004303 (transcript) - C. hemisphaerica