TCONS_00043939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043939
Unique NameTCONS_00043939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1045

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043939 ID=TCONS_00043939|Name=TCONS_00043939|organism=Clytia hemisphaerica|type=transcript|length=1045bp
CTTTTAGGCTGAATCGTAAACTTTCATTTCTTTAGACTAAAGCAACTAAA
AGTTAAACACTTAAACTATAAGAGAAAATGGCTGGTAACGAAGGGTTGTT
ATCCATGGAGAATCCATTGTTCAAAGAATTTGCATTTTATGCCATGGTGG
TGATCATGAAAATGTTTGTGGTCCATTTAAGTGTCTCTTACTACAGAATC
ACCAGAAATGTTTTCGTGTCGGCAGAAGATGTGAAAATAGCGGATCCTTC
CGGCAAATTGAAAATCAACAGAAATGACCCCGTTGTTGAACGACATAGAG
CAGCTCATTTGAATGACATGGAAAACATTATTCCATTTGTTTTGGTTGGT
TTGTTCTACGTCACAACAAATCCTGCAGCTTCTACCGCCATCTTGCTTTT
CCGTATTTTCACTGGATCCAGAATAGTACATTCTATTGTTTACCTCTTCC
ACGTGCCACAGCCAGCACGTGCATTGGCTTTCGGCGTTGGAATTGGAGTC
AATTGCTACATGGGAGCTATCGCGCTACaacaatttctttaaaatgacaa
aaatatattgattaaaaacattatttcAATCGAAGATTTTTTTAATAGTA
TTATGAAAGTATAGACTAATTCATGGGCTATACAGGGGAAAATCAGCCAA
AGATTTCACCGCCATTATACTGTGGTTGAATTTACGCTAAAAGTgtgaaa
aaaacattaaattttcaaaatatgtatTGCAGTTTTACAACCTGAGTTCA
ACCAAAAATTTCTGGTGATCTTTTAGTGTTCCATGTGTAAGTTGCTATGA
ATTATGGGAAATCTGAAGTTATCCTCTCAATCGATAACTTTATTTTAACG
TCCAATCAACGTCAATTGGATGTTTTTATGGACGTTGCTCTGACGTTGTG
TATTACTGATCTATTGTAAAACTATTTGATCCTTTATTAATTCATTCCGA
TCTTGAAATTGGCATATAGGCATTTTTATTATTCTAGGGctttattttgt
taaaagaaTTACATCTTTctttaagaataaaatgattttATCTTG
Run BLAST on NCBI

protein sequence of TCONS_00043939-protein

>TCONS_00043939-protein ID=TCONS_00043939-protein|Name=TCONS_00043939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MAGNEGLLSMENPLFKEFAFYAMVVIMKMFVVHLSVSYYRITRNVFVSAE
DVKIADPSGKLKINRNDPVVERHRAAHLNDMENIIPFVLVGLFYVTTNPA
ASTAILLFRIFTGSRIVHSIVYLFHVPQPARALAFGVGIGVNCYMGAIAL
QQFL
Run BLAST on NCBI

transcript from alignment at sc0004750:1..2400-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043939 ID=TCONS_00043939|Name=TCONS_00043939|organism=Clytia hemisphaerica|type=transcript|length=2400bp|location=Sequence derived from alignment at sc0004750:1..2400- (Clytia hemisphaerica)
CTTTTAGGCTGAATCGTAAACTTTCATTTCTTTAGACTAAAGCAACTAAA
AGTTAAACACTTAAACTATAAGAGAAAATGGCTGGTAACGAAGGGTTGTT
ATCCATGGAGAATCCATTGTTCAAAGAATTTGCATTTTATGCCATGGTGG
TGATCATGAAAATGTTTGTGGTCCATTTAAGTGTCTCTTACTACAGAATC
ACCAGAAATGTAAGTTAATTCCTTTTTATTTTATAAGAGTAATTTTATAC
CATGACGAGACTCTAGAAAATCTAAAATCATATTAAGAGCCATTCCCGGG
GTACTATGTACCAGAGTGTATCTAACGTTTATCGTTTCATAGTACACCCT
GTGTGCATTGCCTGTTTGATAAAAAAATTCCTGTACGAAGACCTCTGCGA
TGAAGTATGATTTGTAAATAGCAACACTTCTCTAATGATCTATCCTCTCT
CACCAACACTCCATCGCAGCGCTCGGTTTGAAAATTCTCAAATCAGAAAA
AAAGACAACAGACCCTCTACGGCAGTGAATTTCGAAATTAGCCGTAGATC
TCGGGTCTGTTTACAGACTATACCCGGGGAGGAGGACATTTAGTTAAAAT
GAGTATCGAGTATAAGTATGAGTATAAGATTCTTTTGAAAGTCTCTCACA
GGGGTAAATAATCCATAATTTGGACATCGAGTCCCCAAAATTACGAAATC
TAAATCGATTAAATGAAATCTGACGTTTTATTTTTGGATTACTTAATCTT
ACACGTTCGAAAAACAGACAATACTAATATTTAGCGCTATCAGTAAGCAC
CAAAAAGCTGATAATACGGAGGGGACGAGGTTGATAATATACTATATATG
GAATATTTTTATGTCAGTTTGTAAGCTCTAAGGTCAACTCTTTCTCAATC
ATACTCAATTCTAATCCTGCTCTCTGATTCGGGTAAAATTCTTGGTCCCT
TGAGAATTCATTCTATCCATTCATTTCAGGTTTTCGTGTCGGCAGAAGAT
GTGAAAATAGCGGATCCTTCCGGCAAATTGAAAATCAACAGAAATGACCC
CGTTGTTGAACGACATAGAGCGTAAGAAATATCTTTTCTTTAGTTTGCTG
AGCTATCTTATTGGTGGAAAATTTCGTCAACAAACGATTTTTTCATTCCT
TTTTATCGACGAATTTTACAACAAGGTATATTGAAGAGGAAAACTTTCGT
CATGTAAAATTCTCGCCAGGGAAAACTTTGTCACATACTTGAGACGTTCA
AACTCTCGCAAGCATAAACTTTCGCTAATCAAGACACAAAAATTAAAATA
CTCACACCAAAAAATTGATTTAGGGACAAAAACTTCTAGAATTCGATTGA
AACTTTTACTTTTTGCAAAACGAGGCTTTAGCAGGCTAAAAAGTACCATA
AATCTTACATTTTATTTGAAGTAAGAAGTTTTTCAGATTTTCTATTTTGT
GAAGAATTTGCAAGGACATTTGATTTCGCGAAAAGGGCTAAATTTCGCGA
AAATCGTGAAAGTTTTTGCTTGCGAAAGTTTAAGAAAAATTTCTTCACTT
TTCCGAACTAAGTATTCTCTTTTAAGAGGATATGATACAACAAAATTTTG
AAAGAAAACAACCTGATACATTTTTCACTACCAAACGATTTTCACGTCAC
TTTCAGAGCTCATTTGAATGACATGGAAAACATTATTCCATTTGTTTTGG
TTGGTTTGTTCTACGTCACAACAAATCCTGCAGCTTCTACCGCCATCTTG
CTTTTCCGTATTTTCACTGGATCCAGAATAGTACATTCTATTGTTTACCT
CTTCCACGTGCCACAGCCAGCACGTGCATTGGCTTTCGGCGTTGGAATTG
GAGTCAATTGCTACATGGGAGCTATCGCGCTACAACAATTTCTTTAAAAT
GACAAAAATATATTGATTAAAAACATTATTTCAATCGAAGATTTTTTTAA
TAGTATTATGAAAGTATAGACTAATTCATGGGCTATACAGGGGAAAATCA
GCCAAAGATTTCACCGCCATTATACTGTGGTTGAATTTACGCTAAAAGTG
TGAAAAAAACATTAAATTTTCAAAATATGTATTGCAGTTTTACAACCTGA
GTTCAACCAAAAATTTCTGGTGATCTTTTAGTGTTCCATGTGTAAGTTGC
TATGAATTATGGGAAATCTGAAGTTATCCTCTCAATCGATAACTTTATTT
TAACGTCCAATCAACGTCAATTGGATGTTTTTATGGACGTTGCTCTGACG
TTGTGTATTACTGATCTATTGTAAAACTATTTGATCCTTTATTAATTCAT
TCCGATCTTGAAATTGGCATATAGGCATTTTTATTATTCTAGGGCTTTAT
TTTGTTAAAAGAATTACATCTTTCTTTAAGAATAAAATGATTTTATCTTG

Coding sequence (CDS) from alignment at sc0004750:1..2400-

>TCONS_00043939 ID=TCONS_00043939|Name=TCONS_00043939|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0004750:1..2400- (Clytia hemisphaerica)
AGCTCATTTGAATGACATGGAAAACATTATTCCATTTGTTTTGGTTGGTT
TGTTCTACGTCACAACAAATCCTGCAGCTTCTACCGCCATCTTGCTTTTC
CGTATTTTCACTGGATCCAGAATAGTACATTCTATTGTTTACCTCTTCCA
CGTGCCACAGCCAGCACGTGCATTGGCTTTCGGCGTTGGAATTGGAGTCA
ATTGCTACATGGGAGCTATCGCGCTACAACAATTTCTTTAAGTTTTCGTG
TCGGCAGAAGATGTGAAAATAGCGGATCCTTCCGGCAAATTGAAAATCAA
CAGAAATGACCCCGTTGTTGAACGACATAGAGCATGGCTGGTAACGAAGG
GTTGTTATCCATGGAGAATCCATTGTTCAAAGAATTTGCATTTTATGCCA
TGGTGGTGATCATGAAAATGTTTGTGGTCCATTTAAGTGTCTCTTACTAC
AGAATCACCAGAAATAGCTCATTTGAATGACATGGAAAACATTATTCCAT
TTGTTTTGGTTGGTTTGTTCTACGTCACAACAAATCCTGCAGCTTCTACC
GCCATCTTGCTTTTCCGTATTTTCACTGGATCCAGAATAGTACATTCTAT
TGTTTACCTCTTCCACGTGCCACAGCCAGCACGTGCATTGGCTTTCGGCG
TTGGAATTGGAGTCAATTGCTACATGGGAGCTATCGCGCTACAACAATTT
CTTTAAGTTTTCGTGTCGGCAGAAGATGTGAAAATAGCGGATCCTTCCGG
CAAATTGAAAATCAACAGAAATGACCCCGTTGTTGAACGACATAGAGCAT
GGCTGGTAACGAAGGGTTGTTATCCATGGAGAATCCATTGTTCAAAGAAT
TTGCATTTTATGCCATGGTGGTGATCATGAAAATGTTTGTGGTCCATTTA
AGTGTCTCTTACTACAGAATCACCAGAAATAGCTCATTTGAATGACATGG
AAAACATTATTCCATTTGTTTTGGTTGGTTTGTTCTACGTCACAACAAAT
CCTGCAGCTTCTACCGCCATCTTGCTTTTCCGTATTTTCACTGGATCCAG
AATAGTACATTCTATTGTTTACCTCTTCCACGTGCCACAGCCAGCACGTG
CATTGGCTTTCGGCGTTGGAATTGGAGTCAATTGCTACATGGGAGCTATC
GCGCTACAACAATTTCTTTAAGTTTTCGTGTCGGCAGAAGATGTGAAAAT
AGCGGATCCTTCCGGCAAATTGAAAATCAACAGAAATGACCCCGTTGTTG
AACGACATAGAGCATGGCTGGTAACGAAGGGTTGTTATCCATGGAGAATC
CATTGTTCAAAGAATTTGCATTTTATGCCATGGTGGTGATCATGAAAATG
TTTGTGGTCCATTTAAGTGTCTCTTACTACAGAATCACCAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027603XLOC_027603Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043939-proteinTCONS_00043939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043939-exon-sc0004750-1575043694:2192..2400TCONS_00043939-exon-sc0004750-1575043694:2192..2400Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1575043694:1330..1421TCONS_00043939-exon-sc0004750-1575043694:1330..1421Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1575043694:1..744TCONS_00043939-exon-sc0004750-1575043694:1..744Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1510915933:2192..2400TCONS_00043939-exon-sc0004750-1510915933:2192..2400Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1510915933:1330..1421TCONS_00043939-exon-sc0004750-1510915933:1330..1421Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1510915933:1..744TCONS_00043939-exon-sc0004750-1510915933:1..744Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1491911889:2192..2400TCONS_00043939-exon-sc0004750-1491911889:2192..2400Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1491911889:1330..1421TCONS_00043939-exon-sc0004750-1491911889:1330..1421Clytia hemisphaericaexon
TCONS_00043939-exon-sc0004750-1491911889:1..744TCONS_00043939-exon-sc0004750-1491911889:1..744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004750supercontigsc0004750:1..2400 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.9191	10.7564	7.15551	7.78624	22.4537	9.9186	48.2036	60.8612	81.3079	86.5081	103.381	50.6685	61.7402	53.3538	40.0827	57.2491	30.9974	31.6324	34.0152	38.5324	25.3732	24.5477	30.41	28.8458	20.6825	22.9151	36.9071	28.2047	119.231	79.3045
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023352MAPEG-like_dom
IPR001129Membr-assoc_MAPEG
Blast
[Close]
BLAST of TCONS_00043939 vs. Swiss-Prot (Human)
Match: MGST1 (Microsomal glutathione S-transferase 1 OS=Homo sapiens GN=MGST1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.683e-35
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = 3 
Query:  105 MENPLFKEFAFYAMVVIMKMFVVHLSVSYYRITRNVFVSAED-VKIADPSGKLKINRNDPVVERHRAAHLNDMENIIPFVLVGLFYVTTNPAASTAILLFRIFTGSRIVHSIVYLFHVPQPARALAFGVGIGVNCYMG 515
            M++ +F  FA YA +++ KM ++  + ++YR+TR VF + ED V         K  R D  VER R AHLND+ENIIPF+ +GL Y  + P  STAIL FR+F G+RI H+I YL  +PQP RAL+F VG GV   M 
Sbjct:    8 MDDEVFMAFASYATIILSKMMLMSTATAFYRLTRKVFANPEDCVAFGKGENAKKYLRTDDRVERVRRAHLNDLENIIPFLGIGLLYSLSGPDPSTAILHFRLFVGARIYHTIAYLTPLPQPNRALSFFVGYGVTLSMA 145
The following BLAST results are available for this feature:
BLAST of TCONS_00043939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGST11.683e-3547.83Microsomal glutathione S-transferase 1 OS=Homo sap... [more]
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