TCONS_00043893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043893
Unique NameTCONS_00043893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043893 ID=TCONS_00043893|Name=TCONS_00043893|organism=Clytia hemisphaerica|type=transcript|length=229bp
NNGACATCAGGTTCTTACTCAGGCTGATTTGTACGTACAATATATGGTTG
ATGATGGAGAGCAGAAATTGAATCTCGTTGCTTAGTTGTAGCAGTTGAAA
TTGGGAcaataaataaagatttcttcTGTTATGCTTCGGATGGAAGGGTA
AATTTATTTGAGCTTGGCAGAGCAGTCTTTTTCGTGTTTGTTGCTTTGGG
TGGGTGACATTATAACTTTGGCTTCTTCG
Run BLAST on NCBI

transcript from alignment at sc0004706:323..551

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043893 ID=TCONS_00043893|Name=TCONS_00043893|organism=Clytia hemisphaerica|type=transcript|length=229bp|location=Sequence derived from alignment at sc0004706:323..551 (Clytia hemisphaerica)
CGAAGAAGCCAAAGTTATAATGTCACCCACCCAAAGCAACAAACACGAAA
AAGACTGCTCTGCCAAGCTCAAATAAATTTACCCTTCCATCCGAAGCATA
ACAgaagaaatctttatttattgTCCCAATTTCAACTGCTACAACTAAGC
AACGAGATTCAATTTCTGCTCTCCATCATCAACCATATATTGTACGTACA
AATCAGCCTGAGTAAGAACCTGATGTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027563XLOC_027563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043893-exon-sc0004706-1491911889:323..551TCONS_00043893-exon-sc0004706-1491911889:323..551Clytia hemisphaericaexon
TCONS_00043893-exon-sc0004706-1510915933:323..551TCONS_00043893-exon-sc0004706-1510915933:323..551Clytia hemisphaericaexon
TCONS_00043893-exon-sc0004706-1575043694:323..551TCONS_00043893-exon-sc0004706-1575043694:323..551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004706supercontigsc0004706:323..551 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.42599	7.03713	3.12193	2.7244	12.6393	4.0495	8.04218	16.1642	15.5781	20.0644	26.9053	42.729	32.4249	50.5298	14.1314	24.0896	19.8177	30.9127	55.273	60.7336	21.5392	30.3215	15.4781	15.459	12.6281	21.0682	32.6714	26.8696	46.4943	45.662
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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