TCONS_00043774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043774
Unique NameTCONS_00043774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043774 ID=TCONS_00043774|Name=TCONS_00043774|organism=Clytia hemisphaerica|type=transcript|length=415bp
ACTGACTTTACCAATATATTACAATCtttcagtttgaatgataaactatt
ttcatgttgatttttttacttttgcagCAATAAGATATCACCACTCCCTC
CACAACAACATGTCGACATCAAATTGAACAACAACGATCTATCGGTGGAT
GAGGTATTAGTACAAGGGACTGTCAGTCCTTTTCATAAGACGCATCATCA
TATAACAGCTGACGAAAGGTTTGGAAGTAACATACCAGACACCATTATGG
AAGAAGAACAATTAGAAACAAGTTCAAGTACTGACACGTCATCTAGTGAG
AGCTTAAAAATGAATTCACAGAACCGAGTCAATTCTATATTATCAAGTCG
GGAGGAAAGCCCGAATCGAGCCGACAGTAGTAAACCGTTTCATACGAGCG
TACCGAATTTACGGA
Run BLAST on NCBI

transcript from alignment at sc0004563:1..660-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043774 ID=TCONS_00043774|Name=TCONS_00043774|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at sc0004563:1..660- (Clytia hemisphaerica)
ACTGACTTTACCAATATATTACAATCTTTCAGTTTGAATGATAAACTATT
TTCATGTTGATTTTTTTACTTTTGCAGCAATAAGATATCACCACTCCCTC
CACAACAACATGTCGACATCAAATTGAACAACAACGATCTATCGGTGGAT
GAGGTATTAGTACAAGGGACTGTCAGTCCTTTTCATAAGACGCATCATCA
TATAACAGCTGACGAAAGGTACTAGACTATAACCTCATGCCGACGTATTT
ATCTCATTATTCACTCTCTCGAACTTTTCAGTCATTATATAGAGAAAAAT
ATGGCACTTTTCTAGATTGACAGCCGTAAGTAATTTGAAAAATAATGAAT
GTGGGATGGTTCTTAGATCTGTACGGGGTTTTAAAAAATTCAGAAAAAGA
ACACATCGTCGTGGGCTTTTATCTGGCACCCGAGAGTAACTATTTTCCCC
CTTTTATTTTAAGGTTTGGAAGTAACATACCAGACACCATTATGGAAGAA
GAACAATTAGAAACAAGTTCAAGTACTGACACGTCATCTAGTGAGAGCTT
AAAAATGAATTCACAGAACCGAGTCAATTCTATATTATCAAGTCGGGAGG
AAAGCCCGAATCGAGCCGACAGTAGTAAACCGTTTCATACGAGCGTACCG
AATTTACGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027450XLOC_027450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043774-exon-sc0004563-1575043694:443..660TCONS_00043774-exon-sc0004563-1575043694:443..660Clytia hemisphaericaexon
TCONS_00043774-exon-sc0004563-1575043694:1..197TCONS_00043774-exon-sc0004563-1575043694:1..197Clytia hemisphaericaexon
TCONS_00043774-exon-sc0004563-1510915933:443..660TCONS_00043774-exon-sc0004563-1510915933:443..660Clytia hemisphaericaexon
TCONS_00043774-exon-sc0004563-1510915933:1..197TCONS_00043774-exon-sc0004563-1510915933:1..197Clytia hemisphaericaexon
TCONS_00043774-exon-sc0004563-1491911889:443..660TCONS_00043774-exon-sc0004563-1491911889:443..660Clytia hemisphaericaexon
TCONS_00043774-exon-sc0004563-1491911889:1..197TCONS_00043774-exon-sc0004563-1491911889:1..197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004563supercontigsc0004563:1..660 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.473033	1.08959	0.410475	0.785721	6.28664	6.39762	9.67338	10.0205	5.82617	7.58518	4.7032	3.76469	2.0769	3.64714	1.73478	4.96083	2.32776	2.28789	1.98721	3.20296	0.457502	3.40684	2.48049	0.915502	14.5987	11.1765	0.636906	2.4193	18.3804	18.1524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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