|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043705 ID=TCONS_00043705|Name=TCONS_00043705|organism=Clytia hemisphaerica|type=transcript|length=1280bp
CCCAATGCAATATTATTGTTTAGTAATAGCTAGCTATAAAATACAAGAAA
GAATAATATGTTAATAACAACGCGGCGTGacatcttcttcatcttcctcG
CGTATATAAATGTTTCTCAATTGTGACAGTTTGGTTAATGAACAACAAAA
CGCATGAATAGCAAATAAACGAAAGCGGCATCAATAAGAATCGAACGTCT
TGAAGTAGGAGTGAATATTAACGTAATGCAAGTCATACAGTTAAGACTTT
GGGTAATGTAATAAAATCAACATATTACCAAGAAACTTGAAACATAACGA
TAAGAGTTTCAAGTGGACGAAAGAGTGTGAATATATACATAATGTGAGAG
TACTATGTGTTCTTACTCTCTCTCCCACTCTTCACCACGTAACCAAGCAG
GTTCTCTTCGCTCTCGACGTGGGTGGATTGTATGCTCATCAGCCACGTTC
TGTGGTGGATTTGGAAGGGTTGATTCATCGTCGTCTGAATCGTCTGATGT
TTCCGTCAATCGATCAGAAGTGAAGGGATCGGATTTGGCGGAAGCAGTTT
CGTTGGGGATGTTAGATACGACGGGAAAGATGTCTTGCAGCGGAACATCA
TATCGTTTCGAGCTGAAAAGTGTACCGTTGAGCTTTTGAAGAGTAGCCAT
GTCAGCACGTGTTTGCATGACTATATAACGTTCGCGTCCTTTGAATTTTG
ATCCTTCTGATTTGATGTAGACAAGAGTGCCGACAGGAATGGGATTTCTG
ATGACATTCGAAGGGATCTTTGCTTTGGATTTAGCACTTGGGACATGGTT
CTTTTCACGAAGCGATGCTTGTTGTTGGCTCAGTAAATGATCGTCCACGT
TTATAGCTTTGTTGGTGAGTTGGTCTCGACGAAAGACAATTTCGCGGGCT
GAAAGACCCCGATTACGGATGCGTGAGTTGAGTTGATGAACAACAGCAGC
CAGCGTTGAATCAGAGATTTGAGAGCCAGAGTTATCGATACGTAAAATCT
CTTTCTCAAACTCTTGGATTGCTTTCTCGGCAACAGgatttttatttgga
tttttcACACGACCAAAGTCTAAAGTTATCCCGTGTTCGTTtaaaatctt
gtcatttttaAGACTTTGAAATCCTGGAGCGTTGTCGATACGAATGGTTG
ATTGGTCATTCCGAAGGAAAGTGGTGTGTGTGATGATTGATGATCTGAGG
ACGTCTGCTGTTTCATCTGGGATGAAAGAAGCGGAGGTGAATGACGAAAA
TACGTCTCGGACGACGAAGATCTTTTGACG Run BLAST on NCBI protein sequence of TCONS_00043705-protein >TCONS_00043705-protein ID=TCONS_00043705-protein|Name=TCONS_00043705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
RQKIFVVRDVFSSFTSASFIPDETADVLRSSIITHTTFLRNDQSTIRIDN
APGFQSLKNDKILNEHGITLDFGRVKNPNKNPVAEKAIQEFEKEILRIDN
SGSQISDSTLAAVVHQLNSRIRNRGLSAREIVFRRDQLTNKAINVDDHLL
SQQQASLREKNHVPSAKSKAKIPSNVIRNPIPVGTLVYIKSEGSKFKGRE
RYIVMQTRADMATLQKLNGTLFSSKRYDVPLQDIFPVVSNIPNETASAKS
DPFTSDRLTETSDDSDDDESTLPNPPQNVADEHTIHPRRERREPAWLRGE
EWERE Run BLAST on NCBI transcript from alignment at sc0004492:5..1284 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043705 ID=TCONS_00043705|Name=TCONS_00043705|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at sc0004492:5..1284 (Clytia hemisphaerica)
CGTCAAAAGATCTTCGTCGTCCGAGACGTATTTTCGTCATTCACCTCCGC
TTCTTTCATCCCAGATGAAACAGCAGACGTCCTCAGATCATCAATCATCA
CACACACCACTTTCCTTCGGAATGACCAATCAACCATTCGTATCGACAAC
GCTCCAGGATTTCAAAGTCTtaaaaatgacaagattttaAACGAACACGG
GATAACTTTAGACTTTGGTCGTGTgaaaaatccaaataaaaatcCTGTTG
CCGAGAAAGCAATCCAAGAGTTTGAGAAAGAGATTTTACGTATCGATAAC
TCTGGCTCTCAAATCTCTGATTCAACGCTGGCTGCTGTTGTTCATCAACT
CAACTCACGCATCCGTAATCGGGGTCTTTCAGCCCGCGAAATTGTCTTTC
GTCGAGACCAACTCACCAACAAAGCTATAAACGTGGACGATCATTTACTG
AGCCAACAACAAGCATCGCTTCGTGAAAAGAACCATGTCCCAAGTGCTAA
ATCCAAAGCAAAGATCCCTTCGAATGTCATCAGAAATCCCATTCCTGTCG
GCACTCTTGTCTACATCAAATCAGAAGGATCAAAATTCAAAGGACGCGAA
CGTTATATAGTCATGCAAACACGTGCTGACATGGCTACTCTTCAAAAGCT
CAACGGTACACTTTTCAGCTCGAAACGATATGATGTTCCGCTGCAAGACA
TCTTTCCCGTCGTATCTAACATCCCCAACGAAACTGCTTCCGCCAAATCC
GATCCCTTCACTTCTGATCGATTGACGGAAACATCAGACGATTCAGACGA
CGATGAATCAACCCTTCCAAATCCACCACAGAACGTGGCTGATGAGCATA
CAATCCACCCACGTCGAGAGCGAAGAGAACCTGCTTGGTTACGTGGTGAA
GAGTGGGAGAGAGAGTAAGAACACATAGTACTCTCACATTATGTATATAT
TCACACTCTTTCGTCCACTTGAAACTCTTATCGTTATGTTTCAAGTTTCT
TGGTAATATGTTGATTTTATTACATTACCCAAAGTCTTAACTGTATGACT
TGCATTACGTTAATATTCACTCCTACTTCAAGACGTTCGATTCTTATTGA
TGCCGCTTTCGTTTATTTGCTATTCATGCGTTTTGTTGTTCATTAACCAA
ACTGTCACAATTGAGAAACATTTATATACGCgaggaagatgaagaagatg
tCACGCCGCGTTGTTATTAACATATTATTCTTTCTTGTATTTTATAGCTA
GCTATTACTAAACAATAATATTGCATTGGG Coding sequence (CDS) from alignment at sc0004492:5..1284 >TCONS_00043705 ID=TCONS_00043705|Name=TCONS_00043705|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0004492:5..1284 (Clytia hemisphaerica)
CGTCAAAAGATCTTCGTCGTCCGAGACGTATTTTCGTCATTCACCTCCGC
TTCTTTCATCCCAGATGAAACAGCAGACGTCCTCAGATCATCAATCATCA
CACACACCACTTTCCTTCGGAATGACCAATCAACCATTCGTATCGACAAC
GCTCCAGGATTTCAAAGTCTtaaaaatgacaagattttaAACGAACACGG
GATAACTTTAGACTTTGGTCGTGTgaaaaatccaaataaaaatcCTGTTG
CCGAGAAAGCAATCCAAGAGTTTGAGAAAGAGATTTTACGTATCGATAAC
TCTGGCTCTCAAATCTCTGATTCAACGCTGGCTGCTGTTGTTCATCAACT
CAACTCACGCATCCGTAATCGGGGTCTTTCAGCCCGCGAAATTGTCTTTC
GTCGAGACCAACTCACCAACAAAGCTATAAACGTGGACGATCATTTACTG
AGCCAACAACAAGCATCGCTTCGTGAAAAGAACCATGTCCCAAGTGCTAA
ATCCAAAGCAAAGATCCCTTCGAATGTCATCAGAAATCCCATTCCTGTCG
GCACTCTTGTCTACATCAAATCAGAAGGATCAAAATTCAAAGGACGCGAA
CGTTATATAGTCATGCAAACACGTGCTGACATGGCTACTCTTCAAAAGCT
CAACGGTACACTTTTCAGCTCGAAACGATATGATGTTCCGCTGCAAGACA
TCTTTCCCGTCGTATCTAACATCCCCAACGAAACTGCTTCCGCCAAATCC
GATCCCTTCACTTCTGATCGATTGACGGAAACATCAGACGATTCAGACGA
CGATGAATCAACCCTTCCAAATCCACCACAGAACGTGGCTGATGAGCATA
CAATCCACCCACGTCGAGAGCGAAGAGAACCTGCTTGGTTACGTGGTGAA
GAGTGGGAGAGAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043705-exon-sc0004492-1491911889:5..1284 | TCONS_00043705-exon-sc0004492-1491911889:5..1284 | Clytia hemisphaerica | exon |
| TCONS_00043705-exon-sc0004492-1510915933:5..1284 | TCONS_00043705-exon-sc0004492-1510915933:5..1284 | Clytia hemisphaerica | exon |
| TCONS_00043705-exon-sc0004492-1575043694:5..1284 | TCONS_00043705-exon-sc0004492-1575043694:5..1284 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004492 | supercontig | sc0004492:5..1284 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
