TCONS_00043649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043649
Unique NameTCONS_00043649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043649 ID=TCONS_00043649|Name=TCONS_00043649|organism=Clytia hemisphaerica|type=transcript|length=810bp
caagaaattgatcaaactttaCGTTGAATCACAACAATGGGAGGAggCGT
TCATTCTTGTCGAAACACACCAAAACTTGAagGATGAAGTGTACGTACCA
TATGCTAATTGGTTGGCGGAAAATGACCGCTTTGACGAGGCGCAAGAAGC
TTTCCACAAAGCTGGCAAGAGGGCAGACGCTGTCAAAGTATTGGAACAAC
TGACACTAAATGCTGTCGTTGAAAACAGGTTTAACGATGCAGGTTATTAT
TTCTGGCAACTTTCGATGCAGTGTCTTGATCTAGCGAGTCAAAAAATGAA
AGGCGATGCGAAAGATGTGGAAGAGAACATTCTCgacaaattctttgaat
ttcaaaggaaagcTGACATTTATTACGCCTATCATCCCATCGCTAAGTAC
ATGTCTGAGCCGTTTACAGCGGAGATGCCAGAAGCTCTTTTCAACATGGG
ACGGTTTTTGTTACATTCTTCCATCAATGAAACGCCACACGGAGTCTCCA
GACTACATGCTTTGTTGACTGTTGCTAAACAAGGCAAAACGCTCGGTGCA
TACAAGTTATCCAGATATGCTTTTGATAAACTTCAGACGATGAGAGTACC
ACAACGTTTCCAACAAAACATTGATGTTGGTAGTATGACCATCAGATCAA
AACCTTTCCAAGATAACCAGGTAATAATCAAACATCGTGATGGCTGCACA
GTGTTTCTTCGGAAAGAACGAATTAGTAGTGTTCTCTTTATATATCCTAG
tacatataatttttgaaagaaaaattgaagaagagagTTGCCTCTGTTTT
TAGTCTGGCC
Run BLAST on NCBI

protein sequence of TCONS_00043649-protein

>TCONS_00043649-protein ID=TCONS_00043649-protein|Name=TCONS_00043649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
KKLIKLYVESQQWEEAFILVETHQNLKDEVYVPYANWLAENDRFDEAQEA
FHKAGKRADAVKVLEQLTLNAVVENRFNDAGYYFWQLSMQCLDLASQKMK
GDAKDVEENILDKFFEFQRKADIYYAYHPIAKYMSEPFTAEMPEALFNMG
RFLLHSSINETPHGVSRLHALLTVAKQGKTLGAYKLSRYAFDKLQTMRVP
QRFQQNIDVGSMTIRSKPFQDNQVIIKHRDGCTVFLRKERISSVLFIYPS
TYNF
Run BLAST on NCBI

transcript from alignment at sc0004432:1..3607+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043649 ID=TCONS_00043649|Name=TCONS_00043649|organism=Clytia hemisphaerica|type=transcript|length=3607bp|location=Sequence derived from alignment at sc0004432:1..3607+ (Clytia hemisphaerica)
caagaaattgatcaaactttaCGTTGAATCACAACAATGGGAGGAggtaa
gaatttttttccagttaatatttctatctttttatttgatctttctttGA
ACATGAccaaatgatttaaaaaacagCTTTTGCGCTGTATCACACCATGA
TCACACTGTTTTTTTTTGCGACTGCTATCGAAGGCGACTGAAATTCACCC
TTTTTGTAAGTGTTTTCATTAGAAAGTTCGGGAGGGCGCTACTCTCTCCC
TAGATTCCCTCCTTTTTTGAGTTATCTCTTTGATTGCATTGTTGAACATC
ACACGCAGAGAGGAATCGATCACCGTTTGGTAAGACACGGCTTTAGTGAA
CCCACAACCTCGCGCGCCGTATTTTCATGCTCTACCTTGCAATGCTACGA
CTATAAAGGCCCCTATAAATctaatttgtttgttttaggaaaaacattat
gtttttaaaacttttcttctctttttaggCGTTCATTCTTGTCGAAACAC
ACCAAAACTTGAaggtttgattaaaaagtttttaacttttGCGTCTATTA
GTGCATCCCGCCTATTATACACCTTTCCATTATTTTTAGTCTAAGAAATT
CACATTTTTTCCGATTCTTGTTCCTAGTGATTTCAGCATATCCATTTCAA
AACCAACATATTTTATAAAGAATAGTGattgcaatattttttttctatac
aAGCGAATATTTATTTATCTAGGATGAAGTGTACGTACCATATGCTAATT
GGTTGGCGGAAAATGACCGCTTTGACGAGGCGCAAGAAGGTACATAGCAT
AATTGAATACCATATtagaaatgtcaatgattataAAATAACATGAACTA
ACCCTCATGATCCGTAAAACTTCTCATGGTAACAGACCACCTTTTGTTCC
GTtagatgaaaaataaagaactttaAGACTTTCGTTCAAGCACTTGCACT
AAAACTGCGACGCTTTAACTTGACTTATAGTTGATTTTATGAGTGTAAAG
TAATTTCTTTTCATAGCTTTCCACAAAGCTGGCAAGAGGGCAGACGCTGT
CAAAGTATTGGAACAACTGACACTAAATGCTGTCGTTGAAAACAGGTATT
TGATGAAATTCTAATTTCTATGCTAacaaactgaaaaagaaaattatcct
TTGCTCACTTTTACTACACTCGATTGTAAGACTGTAAATTATTCATAGAC
TGAAATTTCTTATTAAACTTTtcattaaatgtttttcttaGGTTTAACGA
TGCAGGTTATTATTTCTGGCAACTTTCGATGCAGTGTCTTGATCTAGCGA
GTCAAAAAATGAAAGGTATCTTTCTTATTACAACACCACTTTTATAAATC
AGTTCTTCTTTCTCAAGGGATcgaatttaattttgaaaattattactAAT
TTCCACTTAGTTGCCTAAGCGGCTCACATTGTTCTAGAACTCGAGAAGCG
ATTCTCTTTAATGGCAATAATTCTTATCTGGCgccagatgcagaaatttt
catccgacacgctaaagctctaaaagtcTGGAAAATATTCAACATCttga
aggtttagattacggaatttagcaagaccgcgtcaagaatgCAGCAGGAG
GACTGGTAACCCAACCCTCGTTTTTGgcgattggcgggtccaaccgaaat
atttccAGGTCTACTCCCAATGGTAGTTGAACCCGATTGGGGAtgtggca
catcaaaggccgactatcattcctctctgGTGGGAAGTTGAcccactcct
ttagagcttaagtgtgggcggccgccaatccgccatcggaatatcaaaTA
ACACTAATTCATCCGCAGACACGGTTTAACAAGCATAGGCTGCTGTTGTA
TCAACCAGAGTACTGAAAACACTATATTAAATACACTGAGATATTATCTA
TCGATTATAGATTGTACATTTTTAACCCCGTACTGTTCGCGTACATTTGA
CACAACTTCCCGATGAGAAGGAATACTTTCGATTCTTCTTTTGCTTATAG
GCGATGCGAAAGATGTGGAAGAGAACATTCTCgacaaattctttgaattt
caaaggaaagcTGACATTTATTACGCCTATCATCCCATCGCTAAGTACAT
GGTAAAACGATACAcgatagtatttttttttcttaggcGGTTTGACTGTG
TATAGGCAAGCTTTTATATACAGTTGTCATTTTACGTTATTGTTTGCACG
CGATTCTCGTGCCGGCGAAAAGCTGTGACAAGAAAGGCAGAAAGAAAGCT
GACAAAATTCATGTAAATTACACTTCGACCGAGGCAAATTCTCTAGAGAA
CTAATTCCTTTTAATTGCATCTAAAATCTGGGACGAAACCATGATATGTT
CAAGGTACCTGTTATtctgaaagccttaaaatcttcaGACATTCTAATCA
TTTTCCTCTTTTTCTTCATACTAGTCTGAGCCGTTTACAGCGGAGATGCC
AGAAGCTCTTTTCAACATGGGACGGTTTTTGTTACATTCTTCCATCAATG
AAACGCCACACGGAGTCTCCAGACTGTATCTTTTCATTTGTTTCTCGGGT
CAGAGAAGGATTTGAACCGAGAATCCCTAGCTCGAGGCGCTAGTGCCTTC
ACAACTCGGCCATCGCCCTTTAAAGCGACGAGTTGGGTTGATCCTTTCCT
TACTCATCATATTACCTTTGAGCTTCGGATTAAATTTAACTCCTTTCTCG
TGATTCAGCTATTCTATCATCATAAGTAATAAAATATGAACATCGccttt
tttttacaaagaaGAACAACTGCTGTTAGGTCTAGGGTTAGAGTGAATTT
TTAACTCTTGCCGTTTAAGCCTATAATCTATATTCTCTTTGACCTAAATT
TTCCTTGACATtcaaaatgttatgtacagACATGCTTTGTTGACTGTTGC
TAAACAAGGCAAAACGCTCGGTGCATACAAGTTATCCAGATATGCTTTTG
ATAAACTTCAGGTATGTCCTCATTTTTAATAATACTCTCACACTACTCTG
CTTAGATTCTTACCAAAATAAACAGCGGTAATATTCTGCAACATACATAG
TATTTTCAGGTGCTTAAAAGAGTTTTTTACTCAATTCTAAGACCCTGCAG
TGTCTGTCACCTCCAAACCAAACCTATCAAAACAAAGACTACCTAGAAGT
CCAAGGCTTAGGAATCAGTAGGCTTTTCTTCCAGACCATTCTTCTATCTG
GAGAAACTCTGAAATTAAGATCAGCTGTGTAACTCAGGCCAAATTCTAGA
AAGGCAGGAAAGTGTCCGGTGGTGACCATAAAAATGGCCTGTAAGTTTTC
TTATGGTAAtaataaaattataattttttaataaatttgtattttgtatG
TCTTAACAAAATTTTGTATGTCTAACCAAACAGACGATGAGAGTACCACA
ACGTTTCCAACAAAACATTGATGTTGGTAGTATGACCATCAGATCAAAAC
CTTTCCAAGATAACCAGGTAATAATCAAACATCGTGATGGCTGCACAGTG
TTTCTTCGGAAAGAACGAATTAGTAGTGTTCTCTTTATATATCCTAGtac
atataatttttgaaagaaaaattgaagaagagagTTGCCTCTGTTTTTAG
TCTGGCC

Coding sequence (CDS) from alignment at sc0004432:1..3607+

>TCONS_00043649 ID=TCONS_00043649|Name=TCONS_00043649|organism=Clytia hemisphaerica|type=CDS|length=6885bp|location=Sequence derived from alignment at sc0004432:1..3607+ (Clytia hemisphaerica)
aagaaattgatcaaactttaCGTTGAATCACAACAATGGGAGGAggCGTT
CATTCTTGTCGAAACACACCAAAACTTGAagGATGAAGTGTACGTACCAT
ATGCTAATTGGTTGGCGGAAAATGACCGCTTTGACGAGGCGCAAGAAGCT
TTCCACAAAGCTGGCAAGAGGGCAGACGCTGTCAAAGTATTGGAACAACT
GACACTAAATGCTGTCGTTGAAAACAGGTTTAACGATGCAGGTTATTATT
TCTGGCAACTTTCGATGCAGTGTCTTGATCTAGCGAGTCAAAAAATGAAA
GGCGATGCGAAAGATGTGGAAGAGAACATTCTCgacaaattctttgaatt
tcaaaggaaagcTGACATTTATTACGCCTATCATCCCATCGCTAAGTACA
TGTCTGAGCCGTTTACAGCGGAGATGCCAGAAGCTCTTTTCAACATGGGA
CGGTTTTTGTTACATTCTTCCATCAATGAAACGCCACACGGAGTCTCCAG
ACTACATGCTTTGTTGACTGTTGCTAAACAAGGCAAAACGCTCGGTGCAT
ACAAGTTATCCAGATATGCTTTTGATAAACTTCAGACGATGAGAGTACCA
CAACGTTTCCAACAAAACATTGATGTTGGTAGTATGACCATCAGATCAAA
ACCTTTCCAAGATAACCAGGTAATAATCAAACATCGTGATGGCTGCACAG
TGTTTCTTCGGAAAGAACGAATTAGTAGTGTTCTCTTTATATATCCTAGt
acatataatttttgaaagaaattgatcaaactttaCGTTGAATCACAACA
ATGGGAGGAggCGTTCATTCTTGTCGAAACACACCAAAACTTGAagGATG
AAGTGTACGTACCATATGCTAATTGGTTGGCGGAAAATGACCGCTTTGAC
GAGGCGCAAGAAGCTTTCCACAAAGCTGGCAAGAGGGCAGACGCTGTCAA
AGTATTGGAACAACTGACACTAAATGCTGTCGTTGAAAACAGGTTTAACG
ATGCAGGTTATTATTTCTGGCAACTTTCGATGCAGTGTCTTGATCTAGCG
AGTCAAAAAATGAAAGGCGATGCGAAAGATGTGGAAGAGAACATTCTCga
caaattctttgaatttcaaaggaaagcTGACATTTATTACGCCTATCATC
CCATCGCTAAGTACATGTCTGAGCCGTTTACAGCGGAGATGCCAGAAGCT
CTTTTCAACATGGGACGGTTTTTGTTACATTCTTCCATCAATGAAACGCC
ACACGGAGTCTCCAGACTACATGCTTTGTTGACTGTTGCTAAACAAGGCA
AAACGCTCGGTGCATACAAGTTATCCAGATATGCTTTTGATAAACTTCAG
ACGATGAGAGTACCACAACGTTTCCAACAAAACATTGATGTTGGTAGTAT
GACCATCAGATCAAAACCTTTCCAAGATAACCAGGTAATAATCAAACATC
GTGATGGCTGCACAGTGTTTCTTCGGAAAGAACGAATTAGTAGTGTTCTC
TTTATATATCCTAGtacatataatttttgaaagaaattgatcaaacttta
CGTTGAATCACAACAATGGGAGGAggCGTTCATTCTTGTCGAAACACACC
AAAACTTGAagGATGAAGTGTACGTACCATATGCTAATTGGTTGGCGGAA
AATGACCGCTTTGACGAGGCGCAAGAAGCTTTCCACAAAGCTGGCAAGAG
GGCAGACGCTGTCAAAGTATTGGAACAACTGACACTAAATGCTGTCGTTG
AAAACAGGTTTAACGATGCAGGTTATTATTTCTGGCAACTTTCGATGCAG
TGTCTTGATCTAGCGAGTCAAAAAATGAAAGGCGATGCGAAAGATGTGGA
AGAGAACATTCTCgacaaattctttgaatttcaaaggaaagcTGACATTT
ATTACGCCTATCATCCCATCGCTAAGTACATGTCTGAGCCGTTTACAGCG
GAGATGCCAGAAGCTCTTTTCAACATGGGACGGTTTTTGTTACATTCTTC
CATCAATGAAACGCCACACGGAGTCTCCAGACTACATGCTTTGTTGACTG
TTGCTAAACAAGGCAAAACGCTCGGTGCATACAAGTTATCCAGATATGCT
TTTGATAAACTTCAGACGATGAGAGTACCACAACGTTTCCAACAAAACAT
TGATGTTGGTAGTATGACCATCAGATCAAAACCTTTCCAAGATAACCAGG
TAATAATCAAACATCGTGATGGCTGCACAGTGTTTCTTCGGAAAGAACGA
ATTAGTAGTGTTCTCTTTATATATCCTAGtacatataatttttgaaagaa
attgatcaaactttaCGTTGAATCACAACAATGGGAGGAggCGTTCATTC
TTGTCGAAACACACCAAAACTTGAagGATGAAGTGTACGTACCATATGCT
AATTGGTTGGCGGAAAATGACCGCTTTGACGAGGCGCAAGAAGCTTTCCA
CAAAGCTGGCAAGAGGGCAGACGCTGTCAAAGTATTGGAACAACTGACAC
TAAATGCTGTCGTTGAAAACAGGTTTAACGATGCAGGTTATTATTTCTGG
CAACTTTCGATGCAGTGTCTTGATCTAGCGAGTCAAAAAATGAAAGGCGA
TGCGAAAGATGTGGAAGAGAACATTCTCgacaaattctttgaatttcaaa
ggaaagcTGACATTTATTACGCCTATCATCCCATCGCTAAGTACATGTCT
GAGCCGTTTACAGCGGAGATGCCAGAAGCTCTTTTCAACATGGGACGGTT
TTTGTTACATTCTTCCATCAATGAAACGCCACACGGAGTCTCCAGACTAC
ATGCTTTGTTGACTGTTGCTAAACAAGGCAAAACGCTCGGTGCATACAAG
TTATCCAGATATGCTTTTGATAAACTTCAGACGATGAGAGTACCACAACG
TTTCCAACAAAACATTGATGTTGGTAGTATGACCATCAGATCAAAACCTT
TCCAAGATAACCAGGTAATAATCAAACATCGTGATGGCTGCACAGTGTTT
CTTCGGAAAGAACGAATTAGTAGTGTTCTCTTTATATATCCTAGtacata
taatttttgaaagaaattgatcaaactttaCGTTGAATCACAACAATGGG
AGGAggCGTTCATTCTTGTCGAAACACACCAAAACTTGAagGATGAAGTG
TACGTACCATATGCTAATTGGTTGGCGGAAAATGACCGCTTTGACGAGGC
GCAAGAAGCTTTCCACAAAGCTGGCAAGAGGGCAGACGCTGTCAAAGTAT
TGGAACAACTGACACTAAATGCTGTCGTTGAAAACAGGTTTAACGATGCA
GGTTATTATTTCTGGCAACTTTCGATGCAGTGTCTTGATCTAGCGAGTCA
AAAAATGAAAGGCGATGCGAAAGATGTGGAAGAGAACATTCTCgacaaat
tctttgaatttcaaaggaaagcTGACATTTATTACGCCTATCATCCCATC
GCTAAGTACATGTCTGAGCCGTTTACAGCGGAGATGCCAGAAGCTCTTTT
CAACATGGGACGGTTTTTGTTACATTCTTCCATCAATGAAACGCCACACG
GAGTCTCCAGACTACATGCTTTGTTGACTGTTGCTAAACAAGGCAAAACG
CTCGGTGCATACAAGTTATCCAGATATGCTTTTGATAAACTTCAGACGAT
GAGAGTACCACAACGTTTCCAACAAAACATTGATGTTGGTAGTATGACCA
TCAGATCAAAACCTTTCCAAGATAACCAGGTAATAATCAAACATCGTGAT
GGCTGCACAGTGTTTCTTCGGAAAGAACGAATTAGTAGTGTTCTCTTTAT
ATATCCTAGtacatataatttttgaaagaaattgatcaaactttaCGTTG
AATCACAACAATGGGAGGAggCGTTCATTCTTGTCGAAACACACCAAAAC
TTGAagGATGAAGTGTACGTACCATATGCTAATTGGTTGGCGGAAAATGA
CCGCTTTGACGAGGCGCAAGAAGCTTTCCACAAAGCTGGCAAGAGGGCAG
ACGCTGTCAAAGTATTGGAACAACTGACACTAAATGCTGTCGTTGAAAAC
AGGTTTAACGATGCAGGTTATTATTTCTGGCAACTTTCGATGCAGTGTCT
TGATCTAGCGAGTCAAAAAATGAAAGGCGATGCGAAAGATGTGGAAGAGA
ACATTCTCgacaaattctttgaatttcaaaggaaagcTGACATTTATTAC
GCCTATCATCCCATCGCTAAGTACATGTCTGAGCCGTTTACAGCGGAGAT
GCCAGAAGCTCTTTTCAACATGGGACGGTTTTTGTTACATTCTTCCATCA
ATGAAACGCCACACGGAGTCTCCAGACTACATGCTTTGTTGACTGTTGCT
AAACAAGGCAAAACGCTCGGTGCATACAAGTTATCCAGATATGCTTTTGA
TAAACTTCAGACGATGAGAGTACCACAACGTTTCCAACAAAACATTGATG
TTGGTAGTATGACCATCAGATCAAAACCTTTCCAAGATAACCAGGTAATA
ATCAAACATCGTGATGGCTGCACAGTGTTTCTTCGGAAAGAACGAATTAG
TAGTGTTCTCTTTATATATCCTAGtacatataatttttgaaagaaattga
tcaaactttaCGTTGAATCACAACAATGGGAGGAggCGTTCATTCTTGTC
GAAACACACCAAAACTTGAagGATGAAGTGTACGTACCATATGCTAATTG
GTTGGCGGAAAATGACCGCTTTGACGAGGCGCAAGAAGCTTTCCACAAAG
CTGGCAAGAGGGCAGACGCTGTCAAAGTATTGGAACAACTGACACTAAAT
GCTGTCGTTGAAAACAGGTTTAACGATGCAGGTTATTATTTCTGGCAACT
TTCGATGCAGTGTCTTGATCTAGCGAGTCAAAAAATGAAAGGCGATGCGA
AAGATGTGGAAGAGAACATTCTCgacaaattctttgaatttcaaaggaaa
gcTGACATTTATTACGCCTATCATCCCATCGCTAAGTACATGTCTGAGCC
GTTTACAGCGGAGATGCCAGAAGCTCTTTTCAACATGGGACGGTTTTTGT
TACATTCTTCCATCAATGAAACGCCACACGGAGTCTCCAGACTACATGCT
TTGTTGACTGTTGCTAAACAAGGCAAAACGCTCGGTGCATACAAGTTATC
CAGATATGCTTTTGATAAACTTCAGACGATGAGAGTACCACAACGTTTCC
AACAAAACATTGATGTTGGTAGTATGACCATCAGATCAAAACCTTTCCAA
GATAACCAGGTAATAATCAAACATCGTGATGGCTGCACAGTGTTTCTTCG
GAAAGAACGAATTAGTAGTGTTCTCTTTATATATCCTAGtacatataatt
tttgaaagaaattgatcaaactttaCGTTGAATCACAACAATGGGAGGAg
gCGTTCATTCTTGTCGAAACACACCAAAACTTGAagGATGAAGTGTACGT
ACCATATGCTAATTGGTTGGCGGAAAATGACCGCTTTGACGAGGCGCAAG
AAGCTTTCCACAAAGCTGGCAAGAGGGCAGACGCTGTCAAAGTATTGGAA
CAACTGACACTAAATGCTGTCGTTGAAAACAGGTTTAACGATGCAGGTTA
TTATTTCTGGCAACTTTCGATGCAGTGTCTTGATCTAGCGAGTCAAAAAA
TGAAAGGCGATGCGAAAGATGTGGAAGAGAACATTCTCgacaaattcttt
gaatttcaaaggaaagcTGACATTTATTACGCCTATCATCCCATCGCTAA
GTACATGTCTGAGCCGTTTACAGCGGAGATGCCAGAAGCTCTTTTCAACA
TGGGACGGTTTTTGTTACATTCTTCCATCAATGAAACGCCACACGGAGTC
TCCAGACTACATGCTTTGTTGACTGTTGCTAAACAAGGCAAAACGCTCGG
TGCATACAAGTTATCCAGATATGCTTTTGATAAACTTCAGACGATGAGAG
TACCACAACGTTTCCAACAAAACATTGATGTTGGTAGTATGACCATCAGA
TCAAAACCTTTCCAAGATAACCAGGTAATAATCAAACATCGTGATGGCTG
CACAGTGTTTCTTCGGAAAGAACGAATTAGTAGTGTTCTCTTTATATATC
CTAGtacatataatttttgaaagaaattgatcaaactttaCGTTGAATCA
CAACAATGGGAGGAggCGTTCATTCTTGTCGAAACACACCAAAACTTGAa
gGATGAAGTGTACGTACCATATGCTAATTGGTTGGCGGAAAATGACCGCT
TTGACGAGGCGCAAGAAGCTTTCCACAAAGCTGGCAAGAGGGCAGACGCT
GTCAAAGTATTGGAACAACTGACACTAAATGCTGTCGTTGAAAACAGGTT
TAACGATGCAGGTTATTATTTCTGGCAACTTTCGATGCAGTGTCTTGATC
TAGCGAGTCAAAAAATGAAAGGCGATGCGAAAGATGTGGAAGAGAACATT
CTCgacaaattctttgaatttcaaaggaaagcTGACATTTATTACGCCTA
TCATCCCATCGCTAAGTACATGTCTGAGCCGTTTACAGCGGAGATGCCAG
AAGCTCTTTTCAACATGGGACGGTTTTTGTTACATTCTTCCATCAATGAA
ACGCCACACGGAGTCTCCAGACTACATGCTTTGTTGACTGTTGCTAAACA
AGGCAAAACGCTCGGTGCATACAAGTTATCCAGATATGCTTTTGATAAAC
TTCAGACGATGAGAGTACCACAACGTTTCCAACAAAACATTGATGTTGGT
AGTATGACCATCAGATCAAAACCTTTCCAAGATAACCAGGTAATAATCAA
ACATCGTGATGGCTGCACAGTGTTTCTTCGGAAAGAACGAATTAGTAGTG
TTCTCTTTATATATCCTAGtacatataatttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027333XLOC_027333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043649-exon-sc0004432-1491911889:1..46TCONS_00043649-exon-sc0004432-1491911889:1..46Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:1..46TCONS_00043649-exon-sc0004432-1510915933:1..46Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:1..46TCONS_00043649-exon-sc0004432-1575043694:1..46Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:479..514TCONS_00043649-exon-sc0004432-1491911889:479..514Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:479..514TCONS_00043649-exon-sc0004432-1510915933:479..514Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:479..514TCONS_00043649-exon-sc0004432-1575043694:479..514Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:723..789TCONS_00043649-exon-sc0004432-1491911889:723..789Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:723..789TCONS_00043649-exon-sc0004432-1510915933:723..789Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:723..789TCONS_00043649-exon-sc0004432-1575043694:723..789Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:1017..1095TCONS_00043649-exon-sc0004432-1491911889:1017..1095Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:1017..1095TCONS_00043649-exon-sc0004432-1510915933:1017..1095Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:1017..1095TCONS_00043649-exon-sc0004432-1575043694:1017..1095Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:1242..1315TCONS_00043649-exon-sc0004432-1491911889:1242..1315Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:1242..1315TCONS_00043649-exon-sc0004432-1510915933:1242..1315Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:1242..1315TCONS_00043649-exon-sc0004432-1575043694:1242..1315Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:2001..2101TCONS_00043649-exon-sc0004432-1491911889:2001..2101Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:2001..2101TCONS_00043649-exon-sc0004432-1510915933:2001..2101Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:2001..2101TCONS_00043649-exon-sc0004432-1575043694:2001..2101Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:2425..2525TCONS_00043649-exon-sc0004432-1491911889:2425..2525Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:2425..2525TCONS_00043649-exon-sc0004432-1510915933:2425..2525Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:2425..2525TCONS_00043649-exon-sc0004432-1575043694:2425..2525Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:2880..2961TCONS_00043649-exon-sc0004432-1491911889:2880..2961Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:2880..2961TCONS_00043649-exon-sc0004432-1510915933:2880..2961Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:2880..2961TCONS_00043649-exon-sc0004432-1575043694:2880..2961Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1491911889:3384..3607TCONS_00043649-exon-sc0004432-1491911889:3384..3607Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1510915933:3384..3607TCONS_00043649-exon-sc0004432-1510915933:3384..3607Clytia hemisphaericaexon
TCONS_00043649-exon-sc0004432-1575043694:3384..3607TCONS_00043649-exon-sc0004432-1575043694:3384..3607Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043649-proteinTCONS_00043649-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004432supercontigsc0004432:1..3607 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.15223	8.24319	15.3825	18.1162	33.78	26.1856	26.6061	29.505	20.2936	21.2262	19.4393	15.5663	10.4525	8.8427	7.18242	9.38297	7.64452	11.1187	8.61516	7.92501	7.25253	6.93936	7.53205	8.94385	34.2699	28.3331	6.45805	5.40387	4.94246	4.17817
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00043649 vs. Swiss-Prot (Human)
Match: IF122 (Intraflagellar transport protein 122 homolog OS=Homo sapiens GN=IFT122 PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 3.708e-84
Identity = 122/226 (53.98%), Postives = 174/226 (76.99%), Query Frame = 2 
Query:    2 KKLIKLYVESQQWEEAFILVETHQNLKDEVYVPYANWLAENDRFDEAQEAFHKAGKRADAVKVLEQLTLNAVVENRFNDAGYYFWQLSMQCLDLASQKMKGDAKDVEENILDKFFEFQRKADIYYAYHPIAKYMSEPFTAEMPEALFNMGRFLLHSSINETPHGVSRLHALLTVAKQGKTLGAYKLSRYAFDKLQTMRVPQRFQQNIDVGSMTIRSKPFQDNQVII 679
            K L++L+VE+Q+W+EAF L E H   KD++Y+PYA WLAENDRF+EAQ+AFHKAG++ +AV+VLEQLT NAV E+RFNDA YY+W LSMQCLD+A    + D       +L KF+ FQR A++Y+ YH I ++  +PF+   PE LFN+ RFLLHS   +TP G+S++  L T+AKQ K LGAY+L+R+A+DKL+ + +P RFQ++I++G++TIR+KPF D++ ++
Sbjct:  835 KSLVQLHVETQRWDEAFALGEKHPEFKDDIYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCLDIAQDPAQKD------TMLGKFYHFQRLAELYHGYHAIHRHTEDPFSVHRPETLFNISRFLLHSLPKDTPSGISKVKILFTLAKQSKALGAYRLARHAYDKLRGLYIPARFQKSIELGTLTIRAKPFHDSEELV 1054
The following BLAST results are available for this feature:
BLAST of TCONS_00043649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1223.708e-8453.98Intraflagellar transport protein 122 homolog OS=Ho... [more]
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