TCONS_00043646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043646
Unique NameTCONS_00043646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043646 ID=TCONS_00043646|Name=TCONS_00043646|organism=Clytia hemisphaerica|type=transcript|length=772bp
CTGTTATCCGTGAAAATTGTTTGCCAACATTGAATCTACCTTCCAAAATT
GGAAGAAAAACATCTGTTGTGGAACGATCTATGTCTTCAATAGACAAACG
AGCAGAATATCAAGAAACACTGGACTCAATTCCAGTACCTCAACCAGCAC
CCTGCTACAGTGGACTTGACGAATTCAAAATACGTGACTGAACCTTGTTG
AATTCAGACAAGCCGTTGATTTACAACATCACATGATTCCCAAGAACTTT
ACATTCCCTATTGACACCATTTCTGGTCCCCTCTTCCAGTCAGAATATCT
TCGTGCTTCATGCTGCCCATTATTGATCAAATCTGGAAAATGCACTAATT
GTCAGAGCAAGgaaattcgattgcgttcacAACATAATGCTAAACGAAAA
TTAGCAATGTAACCTGTGAAGCCCAATGCACCGTTATCTATGACATCGCC
TGAACGGTTACAAGCAACAGTACAAGAGCAACGACAAATCAACAAACTTC
TTGAACAAAAAAATGTTGAGCTCAGTGAAAAGCTCAAAACTGCCTTGGAG
AAAGATTCAGTTACTATTGATGATgaaatatagatagatagataagaTAG
ATAAATATATTTACCGGTTTATACTTTACTGTTGAATATATACAGGGTGA
CATATAAAATATGTACATGTCTCTTTTGACGATGCAAATAAAATGTTAGC
TCAAGTTATATGTACTAATAATACTATGTGCtgataaaaataagtaaagt
AATATTTCCCTAATTAGTTTNN
Run BLAST on NCBI

transcript from alignment at sc0004430:2575..4802-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043646 ID=TCONS_00043646|Name=TCONS_00043646|organism=Clytia hemisphaerica|type=transcript|length=2228bp|location=Sequence derived from alignment at sc0004430:2575..4802- (Clytia hemisphaerica)
CTGTTATCCGTGAAAATTGTTTGCCAACATTGAATCTACCTTCCAAAATT
GGAAGAAAAACATCTGTTGTGGAACGATCTATGTCTTCAATAGACAAACG
AGCAGAATATCAAGAAACACTGGACTCAATTCCAGTACCTCAACCAGCAC
CCTGCTACAGTGGACTTGACGAATTCAAAATACGTGTTGGTACCGTGGCT
GATTTAGACAAGTGTGTTTGTGTTCTGTTTTAGACGTCCGGCCGCGTGTC
TTAAACATCCGGCCGAGAGTTTCAAACATCCGGCCGAGAGTTTCAAACTC
CCGGCCGAGAGTTCAAATTACTGGCCGAGAGTTTAAAACTACCGGCCGGA
TGTCTAAACTCTCGCCCTGTAATTTGAACTCTCGGCCGGTAGTTTAAAAA
TCTGCCAGGAAGGTTTGTCATGTAGTAAATTTACGTAGGACGGCCAACTT
ATGTACTTTAGTATCCTCATAGCATATAATAGATGGGTCATGCAGGTTAT
GTATGTTATGTTTACATAATAATGTATGCATATAATAGATGTGCTATGCA
GGCTGTGTATTTTATGTGTTGATCATAATGTGACAGAAAATCGAGGGTAT
TAGGTTTGTTGACAGCCATAATGAGATTCCTAGCTTTAGCCCTAAAGCTT
ATAAAGAGATTGAGCAAAAACACAATAATGCACTCAAGGGACAACATTTT
ATACCAAGGAGTAATCAAACAAAACGACATAACATATATATAACCTGCAT
AATACGTCTATTATATGCTATGAGGATACTATAGTACATAAGTTGGCCGT
CCTACGTAAATTTACTACATGACAAACCTTCCTGGTAGATTTTTAAACTA
CCGACCGAGAGTTCAAATTACCGGGCGAGAGTTTAGACATCCAGCCGGTA
GTTTTAAACTCTCGGCCGGTAATTTGAACTCTCGGCCGGTAGTTTGAAAC
TCTTGGCCGGCCGTTTAAGACACGCGGCCGGACGTCTAAAACAGAACACA
AACACACTTGTCTAAATCAGCCACGGTATGTTGGAAAGTTGAAACTTGAT
TCCAATTGGCAGATGCGCCCTTTCTGATAATGCTGTGGTTATATTGCTAA
GTAGCAACTAATTGCTAGCGAAGTAGTCAATCCTAAAGGACTTGCCCTAT
TTCTCATTGGCTGCAATCTTAGCAATAGTTGTTTTTTGCCTATCTTTCAA
TATGGCTGCACCATTATCCGAAAGGTCTATTGTATGGGATTGGTTAGGGT
TTGGGGATATTGGCATATTTTAATTATCCATACTGTGCTTAATCACCTAT
TGTTTTATGTCTATTCTTGAATGGAAAACAAAAGCAAGAAAAATGAAATA
TGTTTAAAATATCTTTTTCATCCAGTTATCAATTTGTTTTTTCATAGACC
TTTGTCAATAAGGAGGATCTGTTGAATAATTATATTTGTCTATATATGCA
CAGATATGCATTCTGCGCATAATTACAGCATCATATATGTTTTCATAATT
ATGCATGGATGTATCAATGTTTTCCTACTGGACTCAATATTTATTCGACA
TGTCATCCTTACTGAAAGGTCTATTAGTGCTAAGGTGTCATGATTAGTGA
GGTTTTTTTTTTAGACTAATACCTGCTCAATTATTTTTTAGGACTGAACC
TTGTTGAATTCAGACAAGCCGTTGATTTACAACATCACATGATTCCCAAG
AACTTTACATTCCCTATTGACACCATTTCTGGTCCCCTCTTCCAGTCAGA
ATATCTTCGTGCTTCATGCTGCCCATTATTGATCAAATCTGGAAAATGCA
CTAATTGTCAGAGCAAGGAAATTCGATTGCGTTCACAACATAATGCTAAA
CGAAAATTAGCAATGTAACCTGTGAAGCCCAATGCACCGTTATCTATGAC
ATCGCCTGAACGGTTACAAGCAACAGTACAAGAGCAACGACAAATCAACA
AACTTCTTGAACAAAAAAATGTTGAGCTCAGTGAAAAGCTCAAAACTGCC
TTGGAGAAAGATTCAGTTACTATTGATGATGAAATATAGATAGATAGATA
AGATAGATAAATATATTTACCGGTTTATACTTTACTGTTGAATATATACA
GGGTGACATATAAAATATGTACATGTCTCTTTTGACGATGCAAATAAAAT
GTTAGCTCAAGTTATATGTACTAATAATACTATGTGCTGATAAAAATAAG
TAAAGTAATATTTCCCTAATTAGTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027330XLOC_027330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043646-exon-sc0004430-1575043694:4618..4802TCONS_00043646-exon-sc0004430-1575043694:4618..4802Clytia hemisphaericaexon
TCONS_00043646-exon-sc0004430-1575043694:2575..3161TCONS_00043646-exon-sc0004430-1575043694:2575..3161Clytia hemisphaericaexon
TCONS_00043646-exon-sc0004430-1510915933:4618..4802TCONS_00043646-exon-sc0004430-1510915933:4618..4802Clytia hemisphaericaexon
TCONS_00043646-exon-sc0004430-1510915933:2575..3161TCONS_00043646-exon-sc0004430-1510915933:2575..3161Clytia hemisphaericaexon
TCONS_00043646-exon-sc0004430-1491911889:4618..4802TCONS_00043646-exon-sc0004430-1491911889:4618..4802Clytia hemisphaericaexon
TCONS_00043646-exon-sc0004430-1491911889:2575..3161TCONS_00043646-exon-sc0004430-1491911889:2575..3161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004430supercontigsc0004430:2575..4802 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.945233	0.675951	0.784844	0.837651	2.1245	1.07444	1.53931	1.44108	0.743428	1.11818	1.9153	0.83936	1.00583	0.739901	0.894557	0.998397	0.42575	0.824273	0.803843	1.26175	0.60927	0.891542	0.578019	0.853943	1.48845	1.26803	1.55532	1.01437	0.979193	1.0689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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