TCONS_00004294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004294
Unique NameTCONS_00004294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004294 ID=TCONS_00004294|Name=TCONS_00004294|organism=Clytia hemisphaerica|type=transcript|length=399bp
CGGAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGGTCTTTTGGTG
CATCCAATCAAAGGAAGTGTTGAAAATGAATTATCCAAGGATCCAGTGGA
CGAAAATGTGTTCGATCGCATTCAACTCATCAATGGAGACGATGATCATT
TTGAAGGCGATATTGTCATGTCAACAGAAGATGTCGAAAAATTGCTGAGT
CAGCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCACATTGTTGTTATG
GCCGAACGGAGTTGTTCCCTATAATTTTAGCAACGGATTTCCATATGAAA
AACAAGTGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACTTGCATCCGA
TTCGTACCCAGGACTACACAAAGAGGATATGTCGAGTTCATCCGAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00004294-protein

>TCONS_00004294-protein ID=TCONS_00004294-protein|Name=TCONS_00004294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
EDVNHFYSPHFQGLLVHPIKGSVENELSKDPVDENVFDRIQLINGDDDHF
EGDIVMSTEDVEKLLSQRERKRREVVSSTLLLWPNGVVPYNFSNGFPYEK
QVKEAMREVERLTCIRFVPRTTQRGYVEFIRG
Run BLAST on NCBI

transcript from alignment at sc0000041:417717..418742-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004294 ID=TCONS_00004294|Name=TCONS_00004294|organism=Clytia hemisphaerica|type=transcript|length=1026bp|location=Sequence derived from alignment at sc0000041:417717..418742- (Clytia hemisphaerica)
CGGAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGGTGCCTAAACA
TTCATACAAATTCATATAAATAGGGGTGAATTAGGAAAGGGGAAATCAAA
TCAAACAAACCAACTCATAGGAGTAGAAAAGCATTGAAAAACTAGCAAAG
ATTTTGCGAAGAGAAACATAATGGAAATATTCTTTTTTCTTCTTCCACTA
ATGATGGGTAAACAAAATTTATAACAACTTACTCTTCTTTGATGTTGACT
TTAATATTTGAGTGATTCGAATAATCTTACCTTCGCCTTCATACCGAAAC
TACGTTTTCAAAGAATGTTTAAAATCTCTCTGACAACTCCTTTCACTGAC
ATTTCAGGTCTTTTGGTGCATCCAATCAAAGGAAGTGTTGAAAATGAATT
ATCCAAGGATCCAGTGGACGAAAATGTGTTCGATCGCATTCAACTCATCA
ATGGAGACGATGGTAAGAAAAATCTCATTTGAAAAATCTTGACTTTGATC
TTTAGACCATTGTACTGAAAATGCGAATTTCAGGATGCAAATCCTCTGTT
TCCTTTTCATGGTTAAAAACAAACAGTTCCTCTCAAAAAGATTTCAAATC
TTTCATTTAGATCATTTTGAAGGCGATATTGTCATGTCAACAGAAGATGT
CGAAAAATTGCTGAGTCAGCGAGAACGAAAACGACGAGAGGTTGTTTCGA
GCACATTGTTGTTATGGCCGAACGGAGTTGTTCCCTATAATTTTAGCAAC
GGATTTCGTAAGTACATTTTGCAAATTTAAACAAAATCTGAAAAAAACAT
ATTGACGCTATTTTCTGTATGGACCAATCTTGTCCCAAAATCATTTAACC
AAAACTTTTCGTTTCGTTTGAACACCAAAATAATCTTGTAGATTGAATCT
CGATATCTTTTATTTCAGCATATGAAAAACAAGTGAAAGAAGCGATGCGA
GAAGTGGAAAGGTTGACTTGCATCCGATTCGTACCCAGGACTACACAAAG
AGGATATGTCGAGTTCATCCGAGGAT

Coding sequence (CDS) from alignment at sc0000041:417717..418742-

>TCONS_00004294 ID=TCONS_00004294|Name=TCONS_00004294|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000041:417717..418742- (Clytia hemisphaerica)
CATATGAAAAACAAGTGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACT
TGCATCCGATTCGTACCCAGGACTACACAAAGAGGATATGTCGAGTTCAT
CCGAGGAATCATTTTGAAGGCGATATTGTCATGTCAACAGAAGATGTCGA
AAAATTGCTGAGTCAGCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCA
CATTGTTGTTATGGCCGAACGGAGTTGTTCCCTATAATTTTAGCAACGGA
TTTCGTCTTTTGGTGCATCCAATCAAAGGAAGTGTTGAAAATGAATTATC
CAAGGATCCAGTGGACGAAAATGTGTTCGATCGCATTCAACTCATCAATG
GAGACGATGGAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGCATA
TGAAAAACAAGTGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACTTGCA
TCCGATTCGTACCCAGGACTACACAAAGAGGATATGTCGAGTTCATCCGA
GGAATCATTTTGAAGGCGATATTGTCATGTCAACAGAAGATGTCGAAAAA
TTGCTGAGTCAGCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCACATT
GTTGTTATGGCCGAACGGAGTTGTTCCCTATAATTTTAGCAACGGATTTC
GTCTTTTGGTGCATCCAATCAAAGGAAGTGTTGAAAATGAATTATCCAAG
GATCCAGTGGACGAAAATGTGTTCGATCGCATTCAACTCATCAATGGAGA
CGATGGAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGCATATGAA
AAACAAGTGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACTTGCATCCG
ATTCGTACCCAGGACTACACAAAGAGGATATGTCGAGTTCATCCGAGGAA
TCATTTTGAAGGCGATATTGTCATGTCAACAGAAGATGTCGAAAAATTGC
TGAGTCAGCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCACATTGTTG
TTATGGCCGAACGGAGTTGTTCCCTATAATTTTAGCAACGGATTTCGTCT
TTTGGTGCATCCAATCAAAGGAAGTGTTGAAAATGAATTATCCAAGGATC
CAGTGGACGAAAATGTGTTCGATCGCATTCAACTCATCAATGGAGACGAT
GGAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGCATATGAAAAAC
AAGTGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACTTGCATCCGATTC
GTACCCAGGACTACACAAAGAGGATATGTCGAGTTCATCCGAGGAATCAT
TTTGAAGGCGATATTGTCATGTCAACAGAAGATGTCGAAAAATTGCTGAG
TCAGCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCACATTGTTGTTAT
GGCCGAACGGAGTTGTTCCCTATAATTTTAGCAACGGATTTCGTCTTTTG
GTGCATCCAATCAAAGGAAGTGTTGAAAATGAATTATCCAAGGATCCAGT
GGACGAAAATGTGTTCGATCGCATTCAACTCATCAATGGAGACGATGGAA
GACGTAAATCATTTTTATAGTCCACATTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002384XLOC_002384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004294-exon-sc0000041-1575043694:418704..418742TCONS_00004294-exon-sc0000041-1575043694:418704..418742Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1575043694:418281..418385TCONS_00004294-exon-sc0000041-1575043694:418281..418385Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1575043694:417986..418132TCONS_00004294-exon-sc0000041-1575043694:417986..418132Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1575043694:417717..417824TCONS_00004294-exon-sc0000041-1575043694:417717..417824Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:418704..418742TCONS_00004294-exon-sc0000041-1510915933:418704..418742Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:418281..418385TCONS_00004294-exon-sc0000041-1510915933:418281..418385Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:417986..418132TCONS_00004294-exon-sc0000041-1510915933:417986..418132Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:417717..417824TCONS_00004294-exon-sc0000041-1510915933:417717..417824Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:418704..418742TCONS_00004294-exon-sc0000041-1491911889:418704..418742Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:418281..418385TCONS_00004294-exon-sc0000041-1491911889:418281..418385Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:417986..418132TCONS_00004294-exon-sc0000041-1491911889:417986..418132Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:417717..417824TCONS_00004294-exon-sc0000041-1491911889:417717..417824Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004294-proteinTCONS_00004294-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:417717..418742 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.556023	0.650099	0.374069	0	1.96699	1.34808	1.66166	2.31478	1.30584	0.391644	2.16934	1.15845	3.4905	1.97972	3.17591	4.03085	0.725174	4.88172	0	0.623125	0	0	0	0.897052	2.99799	1.24616	4.24465e-05	0	0.4145	0.7315
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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