TCONS_00004287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004287
Unique NameTCONS_00004287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004287 ID=TCONS_00004287|Name=TCONS_00004287|organism=Clytia hemisphaerica|type=transcript|length=3090bp
ATAAATAATTTGATAATTTGTTGTAATATCTTAATTACAGGTTTGATAAA
GGAATGAACGAATTAATTTGATGGAAATTGGATATTTTTAGTATAATTTT
TCAGCGAATAACAAGTTATATTGGataaactgaataaaaaatcgaaaaaa
aacattccatTTAGAAATCTGAATAAATTCACAAGAGACATTCATAAAAT
TGCAAGTGGTTGAATATTACAAATCGGAATTAAAGACTCGTGGGTATGTG
ATAATGAAAAGGGCATTCAGCGAACAGAAAGGTGAAAACTTCTCAACCGA
CAAAAATCACAGATCTTTTTATCACGTAACTCGAGAGAAGAGGAGGGAAA
AGAGCAATGTTGACTTTTATCGCCATATAAAGTCGATATGAGGTAGTGAT
AAGTTGAAAGAATCTTTCTGGTGGTTTTGACTGATGACGTTCaggttgtt
tgttttgatgaagTTTTATAAAGTCAACATGACGTTCAAAGATGGAGAAG
CAACATTCAAAGGACTCGTTATTTTCATCATATTGGAAGGATTCACCATC
GTGTTTTTAAACACCACAGCCATCTTCACGATGGTCTACAAGTTACGAAG
AAACTCAAAGACATCGAGAAGAGGGCGGAAGATGACGCCCGATAAACAAA
TCATTATCAGTTTATGTTTAACAAATTTCACGTCAGGGGCGGCTGTGATA
GTGGAGTTCGCTTGTTTTGCTGCAGGTGAACCAATCTCTTCCAAGAAGAT
CTTAGTCCTGGCGTTTATCATCTTATTCAGTTTGATTGCTTCGTTACTTC
ACGTTATTCTATTATCATTGGAACGCTTCATGGCTCTCAAATTTCCCTTC
CGACATCGTGAAGTCAAAAAGAGATCAACTGTTCTAGCATTGGTGTTTGT
GTGGGTTATCAGTGCATTGCCAACGTTAACCATATTCATCAACAGATCTG
GAGCATTGGAAATCATCTCCATCATAATGATCATTACTGACTTCTTCCTC
ATCCTATCCAGCATCTACATCATCAGTGTTACCAAAAAAGTGTTGAGTGG
ACAAAACGCTGGTATGATTGGTGGTTCAAAAACTGAATCACGTGATTATG
AGAAAGAGATTACACGCTTCTGGTCTACCATTATGGTTGCTTATATCTTA
TTCACCATACCCCCTGTTTTGATCATGATCTTCAAAGGTGGAGAAGCTGT
TTCATTGTACAGTGGAGCACGTGTAGATGGAGTTTTAATGATTCTCATTC
TACTAAAAGCAATTGCTGACCCTTTGTTGTATATTTTGGCTAATCAAATG
AATTGTTGTAAACActcgaaagattcgaaatctTTAGAAGCCTCAAATTC
GGTACAAAAGACTTATGATACAAATGCAACTTCTGCTTATGATTCAAAAC
TGTGAGAAATTGCAAAGTTCTTTTTGCTAGTGGGAGTaatagtttttttg
aaaacatgtagtgtaaataaattaaaacaatatcaaaacaataaaaaata
ccTGGGTATTAAGCAAAGATAGCTATTGAGTCAGTTTGTTACCTTTCCAA
CGTCTCTCTAGGGTTACAAAAGTAGCATAGTGTCAAAataatctctctaa
gggtcagctTTAGGAAAGCACGTATCTGAGGGCATAgacgtagcgagata
ccctgcaaaatttatgggtgagagcggtttttacgacatgtaattattgt
ctttgttttatcaaaagatagtGAATAtatcataaacgtctgcactccct
cataaattttgcagtgtatctcgctacgcctatggaGGGGGTACTTTTTG
TCTCTCTAACGATCACATTTTGCTGAAATTTNCTGTTTTGATCATGATCT
TCAAAGGTGGAGAAGCTGTTTCATTGTACAGTGGAGCACGTGTAGATGGA
GTTTTAATGATTCTCATTCTACTAAAAGCAATTGCTGACCCTTTGTTGTA
TATTTTGGCTAATCAAATGAATTGTTGTAAACActcgaaagattcgaaat
ctTTAGAAGCCTCAAATTCGGTACAAAAGACTTATGATACAAATGCAACT
TCTGCTTATGATTCAAAACTGTGAGAAATTGCAAAGTTCTTTTTGCTAGT
GGGAGTaatagtttttttgaaaacatgtagtgtaaataaattaaaacaat
atcaaaacaataaaaaataccTGGGTATTAAGCAAAGATAGCTATTGAGT
CAGTTTGTTACCTTTCCAACGTCTCTCTAGGGTTACAAAAGTAGCATAGT
GTCAAAataatctctctaagggtcagctTTAGGAAAGCACGTATCTGAGG
GCATAgacgtagcgagataccctgcaaaatttatgggtgagagcggtttt
tacgacatgtaattattgtctttgttttatcaaaagatagtGAATAtatc
ataaacgtctgcactccctcataaattttgcagtgtatctcgctacgcct
atggaGGGGGTACTTTTTGTCTCTCTAACGATCacattttgctgaaattt
aacCCCAGGTACAATAATCAATAttataaaaagctttaaaaaacttTATC
ATTAATAAAAATGACCATTCTGAAGTGAATTTGCGAACATTGACAAGTTG
AGGTGTCCCATTCACCTTTCACTACCTTTTGGGATAAACTGTTGTACAGT
GTCTTCACCTGTTCCACATAATAAACAGTTCATCGAATATTCTTGCTCTT
CATCAATCACCGAGAAAGTATACTCATGTTCAGCAATGACATGCGCACAA
CTGTCACACGTGTGAATGTAGGttatattttcttcttcatcatcttcTTT
CAATTGTTTATTCGAAATCTTGATCAATTCTCGCTTCCCACACTCTTTGC
AACCTATCAAAAAGCAAATTCTTAATATACCTTcaggggaagaaattttg
gcgggaatttactttggcggatggcgggaaaaattaaaatttagtgGGAA
ATTCTAAATTCTATCTGACCTCATTAAAAAGTTTATATAGTGTTTTAGAC
ATTTATCGCTACTTTAATAGGTAAAGTCCATTCACTTTTTAATGGacgta
ttgaaaaaaaaaaattttcaccgctttaaaatatatttac
Run BLAST on NCBI

protein sequence of Seven transmembrane protein

>TCONS_00004287-protein ID=TCONS_00004287-protein|Name=Seven transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MTFRLFVLMKFYKVNMTFKDGEATFKGLVIFIILEGFTIVFLNTTAIFTM
VYKLRRNSKTSRRGRKMTPDKQIIISLCLTNFTSGAAVIVEFACFAAGEP
ISSKKILVLAFIILFSLIASLLHVILLSLERFMALKFPFRHREVKKRSTV
LALVFVWVISALPTLTIFINRSGALEIISIIMIITDFFLILSSIYIISVT
KKVLSGQNAGMIGGSKTESRDYEKEITRFWSTIMVAYILFTIPPVLIMIF
KGGEAVSLYSGARVDGVLMILILLKAIADPLLYILANQMNCCKHSKDSKS
LEASNSVQKTYDTNATSAYDSKL
Run BLAST on NCBI

transcript from alignment at sc0000041:400615..405253-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004287 ID=TCONS_00004287|Name=TCONS_00004287|organism=Clytia hemisphaerica|type=transcript|length=4639bp|location=Sequence derived from alignment at sc0000041:400615..405253- (Clytia hemisphaerica)
ATAAATAATTTGATAATTTGTTGTAATATCTTAATTACAGGTTTGATAAA GGAATGAACGAATTAATTTGATGGAAATTGGATATTTTTAGTATAATTTT TCAGCGAATAACAAGTTATATTGGATAAACTGAATAAAAAATCGAAAAAA AACATTCCATTTAGAAATCTGAATAAATTCACAAGAGACATTCATAAAAT TGCAAGTGGTTGAATATTACAAATCGGAATTAAAGACTCGTGGGTATGTG ATAATGAAAAGGGCATTCAGCGAACAGAAAGGTGAAAACTTCTCAACCGA CAAAAATCACAGATCTTTTTATCACGTAACTCGAGAGAAGAGGAGGGAAA AGAGCAATGTTGACTTTTATCGCCATATAAAGTCGATATGAGGTAGTGAT AAGTTGAAAGAATCTTTCTGGTGGTTTTGACTGATGACGTTCAGGTTGTT TGTTTTGATGAAGTTTTATAAAGGTAAACAAACCAAAGAGGAAGAGAGTC GCTTTGGAAACTTTATTTGAATCTCATTTTTAAAAAATACATCTCTCGTT CATTACGAGTGAGACGAAGAGGCACTTGTGTCTTGATTTCTCGGGTATGT ATTAATGAAGTGAAAGCCCGAAGGGTAGAAGCGAATCTTTAACTTTTCTC AGAAAAGAAAAAGTGAAGCCTTAAGATATACGCCGTTTTTTTTTGATGAC GTATTGAATTTAGTGGTTTCTTTGTTTTCGAGTTATATATTTTTTGAAAT CAAGCGGCAAATTTTAATTTCAATCTGGTGATTGTATTAAAACCACGCGG ACCGCTCAAGGCCACGCAACTTAGGTAGGATTTAGTGGTATCAAATCCTT CTTAAGAGATTCGCTTCTAGCCCTTTGGGCTTTTACTTCATTGGTGTGTG TCTCATCACTTATAAATTTATTATAACATGGTGTAAATTTCTATTTAAAT ATTATAGAGTTGAAAATTATCAAATTTTATAAATTCGCTTAAAAGACTCC AGTCAACATGACGTTCAAAGATGGAGAAGCAACATTCAAAGGACTCGTTA TTTTCATCATATTGGAAGGATTCACCATCGTGTTTTTAAACACCACAGCC ATCTTCACGATGGTCTACAAGTTACGAAGAAACTCAAAGACATCGAGAAG AGGGCGGAAGATGACGCCCGATAAACAAATCATTATCAGTTTATGTTTAA CAAATTTCACGTCAGGGGCGGCTGTGATAGTGGAGTTCGCTTGTTTTGCT GCAGGTGAACCAATCTCTTCCAAGAAGATCTTAGTCCTGGCGTTTATCAT CTTATTCAGTTTGATTGCTTCGTTACTTCACGTTATTCTATTATCATTGG AACGCTTCATGGCTCTCAAATTTCCCTTCCGACATCGTGAAGTCAAAAAG AGATCAACTGTTCTAGCATTGGTGTTTGTGTGGGTTATCAGTGCATTGCC AACGTTAACCATATTCATCAACAGATCTGGAGCATTGGAAATCATCTCCA TCATAATGATCATTACTGACTTCTTCCTCATCCTATCCAGCATCTACATC ATCAGTGTTACCAAGAAAGTGTTGAGTGGACAAAACGCTGGTATGATTGG TGGTTCAAAAACTGAATCACGTGATTATGAGAAAGAGATCNAGGGTAGAA GCGAATCTTTAACTTTTCTCAGAAAAGAAAAAGTGAAGCCTTAAGATATA CGCCGTTTTTTTTTGATGACGTATTGAATTTAGTGGTTTCTTTGTTTTCG AGTTATATATTTTTTGAAATCAAGCGGCAAATTTTAATTTCAATCTGGTG ATTGTATTAAAACCACGCGGACCGCTCAAGGCCACGCAACTTAGGTAGGA TTTAGTGGTATCAAATCCTTCTTAAGAGATTCGCTTCTAGCCCTTTGGGC TTTTACTTCATTGGTGTGTGTCTCATCACTTATAAATTTATTATAACATG GTGTAAATTTCTATTTAAATATTATAGAGTTGAAAATTATCAAATTTTAT AAATTCGCTTAAAACACTCCAGTCAACATGACGTTCAAAGATGGAGAAGC AACATTCAAAGGACTCGTTATTTTCATCATATTGGAAGGATTCACCATCG TGTTTTTAAACACCACAGCCATCTTCACGATGGTCTACAAGTTACGAAGA AACTCAAAGACATCGAGAAGAGGGCGGAAGATGACGCCCGATAAACAAAT CATTATCAGTTTATGTTTAACAAATTTCACGTCAGGGGCGGCTGTGATAG TGGAGTTCGCTTGTTTTGCTGCAGGTGAACCAATCTCTTCCAAGAAGATC TTAGTCCTGGCGTTTATCATCTTATTCAGTTTGATTGCTTCGTTACTTCA CGTTATTCTATTATCATTGGAACGCTTCATGGCTCTCAAATTTCCCTTCC GACATCGTGAAGTCAAAAAGAGATCAACTGTTCTAGCATTGGTGTTTGTG TGGGTTATCAGTGCATTGCCAACGTTAACCATATTCATCAACAGATCTGG AGCATTGGAAATCATCTCCATCATAATGATCATTACTGACTTCTTCCTCA TCCTATCCAGCATCTACATCATCAGTGTTACCAAAAAAGTGTTGAGTGGA CAAAACGCTGGTATGATTGGTGGTTCAAAAACTGAATCACGTGATTATGA GAAAGAGATTACACGCTTCTGGTCTACCATTATGGTTGCTTATATCTTAT TCACCATACCCCCTGTTTTGATCATGATCTTCAAAGGTGGAGAAGCTGTT TCATTGTACAGTGGAGCACGTGTAGATGGAGTTTTAATGATTCTCATTCT ACTAAAAGCAATTGCTGACCCTTTGTTGTATATTTTGGCTAATCAAATGA ATTGTTGTAAACACTCGAAAGATTCGAAATCTTTAGAAGCCTCAAATTCG GTACAAAAGACTTATGATACAAATGCAACTTCTGCTTATGATTCAAAACT GTGAGAAATTGCAAAGTTCTTTTTGCTAGTGGGAGTAATAGTTTTTTTGA AAACATGTAGTGTAAATAAATTAAAACAATATCAAAACAATAAAAAATAC CTGGGTATTAAGCAAAGATAGCTATTGAGTCAGTTTGTTACCTTTCCAAC GTCTCTCTAGGGTTACAAAAGTAGCATAGTGTCAAAATAATCTCTCTAAG GGTCAGCTTTAGGAAAGCACGTATCTGAGGGCATAGACGTAGCGAGATAC CCTGCAAAATTTATGGGTGAGAGCGGTTTTTACGACATGTAATTATTGTC TTTGTTTTATCAAAAGATAGTGAATATATCATAAACGTCTGCACTCCCTC ATAAATTTTGCAGTGTATCTCGCTACGCCTATGGAGGGGGTACTTTTTGT CTCTCTAACGATCACATTTTGCTGAAATTTNCTGTTTTGATCATGATCTT CAAAGGTGGAGAAGCTGTTTCATTGTACAGTGGAGCACGTGTAGATGGAG TTTTAATGATTCTCATTCTACTAAAAGCAATTGCTGACCCTTTGTTGTAT ATTTTGGCTAATCAAATGAATTGTTGTAAACACTCGAAAGATTCGAAATC TTTAGAAGCCTCAAATTCGGTACAAAAGACTTATGATACAAATGCAACTT CTGCTTATGATTCAAAACTGTGAGAAATTGCAAAGTTCTTTTTGCTAGTG GGAGTAATAGTTTTTTTGAAAACATGTAGTGTAAATAAATTAAAACAATA TCAAAACAATAAAAAATACCTGGGTATTAAGCAAAGATAGCTATTGAGTC AGTTTGTTACCTTTCCAACGTCTCTCTAGGGTTACAAAAGTAGCATAGTG TCAAAATAATCTCTCTAAGGGTCAGCTTTAGGAAAGCACGTATCTGAGGG CATAGACGTAGCGAGATACCCTGCAAAATTTATGGGTGAGAGCGGTTTTT ACGACATGTAATTATTGTCTTTGTTTTATCAAAAGATAGTGAATATATCA TAAACGTCTGCACTCCCTCATAAATTTTGCAGTGTATCTCGCTACGCCTA TGGAGGGGGTACTTTTTGTCTCTCTAACGATCACATTTTGCTGAAATTTA ACCCCAGGTACAATAATCAATATTATAAAAAGCTTTAAAAAACTTTATCA TTAATAAAAATGACCATTCTGAAGTGAATTTGCGAACATTGACAAGTTGA GGTGTCCCATTCACCTTTCACTACCTTTTGGGATAAACTGTTGTACAGTG TCTTCACCTGTTCCACATAATAAACAGTTCATCGAATATTCTTGCTCTTC ATCAATCACCGAGAAAGTATACTCATGTTCAGCAATGACATGCGCACAAC TGTCACACGTGTGAATGTAGGTTATATTTTCTTCTTCATCATCTTCTTTC AATTGTTTATTCGAAATCTTGATCAATTCTCGCTTCCCACACTCTTTGCA ACCTATCAAAAAGCAAATTCTTAATATACCTTCAGGGGAAGAAATTTTGG CGGGAATTTACTTTGGCGGATGGCGGGAAAAATTAAAATTTAGTGGGAAA TTCTAAATTCTATCTGACCTCATTAAAAAGTTTATATAGTGTTTTAGACA TTTATCGCTACTTTAATAGGTAAAGTCCATTCACTTTTTAATGGACGTAT TGAAAAAAAAAAATTTTCACCGCTTTAAAATATATTTAC

Coding sequence (CDS) from alignment at sc0000041:400615..405253-

>TCONS_00004287 ID=TCONS_00004287|Name=TCONS_00004287|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000041:400615..405253- (Clytia hemisphaerica)
TCAACATGACGTTCAAAGATGGAGAAGCAACATTCAAAGGACTCGTTATT
TTCATCATATTGGAAGGATTCACCATCGTGTTTTTAAACACCACAGCCAT
CTTCACGATGGTCTACAAGTTACGAAGAAACTCAAAGACATCGAGAAGAG
GGCGGAAGATGACGCCCGATAAACAAATCATTATCAGTTTATGTTTAACA
AATTTCACGTCAGGGGCGGCTGTGATAGTGGAGTTCGCTTGTTTTGCTGC
AGGTGAACCAATCTCTTCCAAGAAGATCTTAGTCCTGGCGTTTATCATCT
TATTCAGTTTGATTGCTTCGTTACTTCACGTTATTCTATTATCATTGGAA
CGCTTCATGGCTCTCAAATTTCCCTTCCGACATCGTGAAGTCAAAAAGAG
ATCAACTGTTCTAGCATTGGTGTTTGTGTGGGTTATCAGTGCATTGCCAA
CGTTAACCATATTCATCAACAGATCTGGAGCATTGGAAATCATCTCCATC
ATAATGATCATTACTGACTTCTTCCTCATCCTATCCAGCATCTACATCAT
CAGTGTTACCAAAAAAGTGTTGAGTGGACAAAACGCTGGTATGATTGGTG
GTTCAAAAACTGAATCACGTGATTATGAGAAAGAGATTACACGCTTCTGG
TCTACCATTATGGTTGCTTATATCTTATTCACCATACCCCCTGTTTTGAT
CATGATCTTCAAAGGTGGAGAAGCTGTTTCATTGTACAGTGGAGCACGTG
TAGATGGAGTTTTAATGATTCTCATTCTACTAAAAGCAATTGCTGACCCT
TTGTTGTATATTTTGGCTAATCAAATGAATTGTTGTAAACACTCGAAAGA
TTCGAAATCTTTAGAAGCCTCAAATTCGGTACAAAAGACTTATGATACAA
ATGCAACTTCTGCTTATGATTCAAAACTGTGAATGACGTTCAGGTTGTTT
GTTTTGATGAAGTTTTATAAAGTCAACATGACGTTCAAAGATGGAGAAGC
AACATTCAAAGGACTCGTTATTTTCATCATATTGGAAGGATTCACCATCG
TGTTTTTAAACACCACAGCCATCTTCACGATGGTCTACAAGTTACGAAGA
AACTCAAAGACATCGAGAAGAGGGCGGAAGATGACGCCCGATAAACAAAT
CATTATCAGTTTATGTTTAACAAATTTCACGTCAGGGGCGGCTGTGATAG
TGGAGTTCGCTTGTTTTGCTGCAGGTGAACCAATCTCTTCCAAGAAGATC
TTAGTCCTGGCGTTTATCATCTTATTCAGTTTGATTGCTTCGTTACTTCA
CGTTATTCTATTATCATTGGAACGCTTCATGGCTCTCAAATTTCCCTTCC
GACATCGTGAAGTCAAAAAGAGATCAACTGTTCTAGCATTGGTGTTTGTG
TGGGTTATCAGTGCATTGCCAACGTTAACCATATTCATCAACAGATCTGG
AGCATTGGAAATCATCTCCATCATAATGATCATTACTGACTTCTTCCTCA
TCCTATCCAGCATCTACATCATCAGTGTTACCAAAAAAGTGTTGAGTGGA
CAAAACGCTGGTATGATTGGTGGTTCAAAAACTGAATCACGTGATTATGA
GAAAGAGATTACACGCTTCTGGTCTACCATTATGGTTGCTTATATCTTAT
TCACCATACCCCCTGTTTTGATCATGATCTTCAAAGGTGGAGAAGCTGTT
TCATTGTACAGTGGAGCACGTGTAGATGGAGTTTTAATGATTCTCATTCT
ACTAAAAGCAATTGCTGACCCTTTGTTGTATATTTTGGCTAATCAAATGA
ATTGTTGTAAACACTCGAAAGATTCGAAATCTTTAGAAGCCTCAAATTCG
GTACAAAAGACTTATGATACAAATGCAACTTCTGCTTATGATTCAAAACT
GTGAATGACGTTCAGGTTGTTTGTTTTGATGAAGTTTTATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002380XLOC_002380Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Seven transmembrane proteinTCONS_00004287-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004287-exon-sc0000041-1575043694:404781..405253TCONS_00004287-exon-sc0000041-1575043694:404781..405253Clytia hemisphaericaexon
TCONS_00004287-exon-sc0000041-1575043694:400615..403231TCONS_00004287-exon-sc0000041-1575043694:400615..403231Clytia hemisphaericaexon
TCONS_00004287-exon-sc0000041-1510915933:404781..405253TCONS_00004287-exon-sc0000041-1510915933:404781..405253Clytia hemisphaericaexon
TCONS_00004287-exon-sc0000041-1510915933:400615..403231TCONS_00004287-exon-sc0000041-1510915933:400615..403231Clytia hemisphaericaexon
TCONS_00004287-exon-sc0000041-1491911889:404781..405253TCONS_00004287-exon-sc0000041-1491911889:404781..405253Clytia hemisphaericaexon
TCONS_00004287-exon-sc0000041-1491911889:400615..403231TCONS_00004287-exon-sc0000041-1491911889:400615..403231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:400615..405253 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0468043 0.000184603 0 0.445818 0.0596737 0.162582 0 0 0 0 0 0 0 2.6105e-10 0 0 0 0.0397056 0 0 0.517644 0 0.974526 0 5.11354e-07 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
BLAST of TCONS_00004287 vs. Swiss-Prot (Human)
Match: CHUR (Protein Churchill OS=Homo sapiens GN=CHURC1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.410e-21
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = -3
Query: 2642 LIGCKECGKRELIKISNKQLKEDDEEENITYIHTCDSCAHVIAEHEYTFSVIDEEQEYSMNCLLCGTGEDTVQ 2860
              GC  C KR+ + I+NK LKE+D EE +TY H C +C HVIA HEYTFS++DE QEY+M CLLCG  EDT+ 
Sbjct:   54 FTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEYTFSIMDEFQEYTMLCLLCGKAEDTIS 126          
The following BLAST results are available for this feature:
BLAST of TCONS_00004287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHUR1.410e-2158.90Protein Churchill OS=Homo sapiens GN=CHURC1 PE=1 S... [more]
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