TCONS_00043528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043528
Unique NameTCONS_00043528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043528 ID=TCONS_00043528|Name=TCONS_00043528|organism=Clytia hemisphaerica|type=transcript|length=522bp
CACTGGTTTGAGGTGGCATTTTCTTCCCAAGCGTTGGTTTGTATATGAAT
AAATACCGCCTTCCCCTTCaccatagttaaaatttggcacCAGTTGTTCG
ATTATACACCATGTATATATAATTTGGTATCTTTCGCATCTTCTCTCGAG
ACTGTACATATTGAGGTGtttgagcttctcccaataATTCAAATTGTGTG
GAAGTTGGATCCCTTTTATAAAGGATTTTTGCAGATACTCCAGTCCTTGC
ATCAGGGATCGCTTTGTAGGAGACCATAGCTGGGAGCAGTATTCCAGATG
TTGAAGTACCAATGTCTTCCAAAGAGTGATCATTCTGGATCATTACTGAT
TTATCTCTGGACTTGAAGGTTCTGTATATCCAGGCACTTATACCCTTGAC
TCTGTCAGTGATCGTTTGAATGTGCATTTCATATGACAGGTTGTTTGAGA
GCAGGATACCCAGGTCTTTCACTgcactttttatttcgattggcTGCTGT
ACATCTGATTTGTAGACTGAGT
Run BLAST on NCBI

protein sequence of TCONS_00043528-protein

>TCONS_00043528-protein ID=TCONS_00043528-protein|Name=TCONS_00043528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
SVYKSDVQQPIEIKSAVKDLGILLSNNLSYEMHIQTITDRVKGISAWIYR
TFKSRDKSVMIQNDHSLEDIGTSTSGILLPAMVSYKAIPDARTGVSAKIL
YKRDPTSTQFELLGEAQTPQYVQSREKMRKIPNYIYMVYNRTTGAKF
Run BLAST on NCBI

transcript from alignment at sc0004324:12808..13329

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043528 ID=TCONS_00043528|Name=TCONS_00043528|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0004324:12808..13329 (Clytia hemisphaerica)
ACTCAGTCTACAAATCAGATGTACAGCAgccaatcgaaataaaaagtgcA
GTGAAAGACCTGGGTATCCTGCTCTCAAACAACCTGTCATATGAAATGCA
CATTCAAACGATCACTGACAGAGTCAAGGGTATAAGTGCCTGGATATACA
GAACCTTCAAGTCCAGAGATAAATCAGTAATGATCCAGAATGATCACTCT
TTGGAAGACATTGGTACTTCAACATCTGGAATACTGCTCCCAGCTATGGT
CTCCTACAAAGCGATCCCTGATGCAAGGACTGGAGTATCTGCAAAAATCC
TTTATAAAAGGGATCCAACTTCCACACAATTTGAATtattgggagaagct
caaaCACCTCAATATGTACAGTCTCGAGAGAAGATGCGAAAGATACCAAA
TTATATATACATGGTGTATAATCGAACAACTGgtgccaaattttaactat
ggtGAAGGGGAAGGCGGTATTTATTCATATACAAACCAACGCTTGGGAAG
AAAATGCCACCTCAAACCAGTG

Coding sequence (CDS) from alignment at sc0004324:12808..13329

>TCONS_00043528 ID=TCONS_00043528|Name=TCONS_00043528|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0004324:12808..13329 (Clytia hemisphaerica)
TCAGTCTACAAATCAGATGTACAGCAgccaatcgaaataaaaagtgcAGT
GAAAGACCTGGGTATCCTGCTCTCAAACAACCTGTCATATGAAATGCACA
TTCAAACGATCACTGACAGAGTCAAGGGTATAAGTGCCTGGATATACAGA
ACCTTCAAGTCCAGAGATAAATCAGTAATGATCCAGAATGATCACTCTTT
GGAAGACATTGGTACTTCAACATCTGGAATACTGCTCCCAGCTATGGTCT
CCTACAAAGCGATCCCTGATGCAAGGACTGGAGTATCTGCAAAAATCCTT
TATAAAAGGGATCCAACTTCCACACAATTTGAATtattgggagaagctca
aaCACCTCAATATGTACAGTCTCGAGAGAAGATGCGAAAGATACCAAATT
ATATATACATGGTGTATAATCGAACAACTGgtgccaaattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027216XLOC_027216Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043528-proteinTCONS_00043528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043528-exon-sc0004324-1491911889:12808..13329TCONS_00043528-exon-sc0004324-1491911889:12808..13329Clytia hemisphaericaexon
TCONS_00043528-exon-sc0004324-1510915933:12808..13329TCONS_00043528-exon-sc0004324-1510915933:12808..13329Clytia hemisphaericaexon
TCONS_00043528-exon-sc0004324-1575043694:12808..13329TCONS_00043528-exon-sc0004324-1575043694:12808..13329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004324supercontigsc0004324:12808..13329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16466	1.41599	1.48303	1.19664	1.48037	0.933696	1.53772	2.4231	1.74676	3.44337	3.20706	3.55129	3.03187	2.14447	0.99439	1.10332	1.65409	0.233048	1.20533	2.10855	1.47728	3.16683	1.35998	0	1.52451	1.03024	2.58943	2.4185	1.95264	2.21927
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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