TCONS_00043475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043475
Unique NameTCONS_00043475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043475 ID=TCONS_00043475|Name=TCONS_00043475|organism=Clytia hemisphaerica|type=transcript|length=518bp
TGAAAACCTAGGTTAAGGCTGTATGTATATGCTCGATTGGCATAGATTTG
CGGTATTGACGGATAGCTAAGTAGAGATTACTTGGTTTCAGCCTAATTAA
GATACGATATCAATCAACGAGTTGAGCATCCCATTGTGCACAGGGAGATG
TCAACGTAAGAGTAGAAAGGAAATTTTACCTTTGTTCGGATGTTTAAGTT
CGTGGAAACAATTGAATGAGATATGGTTTATTTACGATGGTATTCCTGTC
TGGAGACAGAGGAATTGATATTCGTTACCGAATTGAGATATTTTATTAAG
CGATATTTATTACACCGATTACGATGTTCAAAGagagagagagagagaga
gagagagagttatTTATAAATTCGATGGCAATCGATAACACCGAACCAGC
AACAATTATTTACCATTATTGAGAGAAGAGGTTGAATAGAAGATAGACAT
TCGCGAAGTCATCTTACCGTAACGCCTCATGATAAAGTCTGAAAGAACTT
TAACCAATTGACAATAGA
Run BLAST on NCBI

transcript from alignment at sc0004273:9..526

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043475 ID=TCONS_00043475|Name=TCONS_00043475|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0004273:9..526 (Clytia hemisphaerica)
TCTATTGTCAATTGGTTAAAGTTCTTTCAGACTTTATCATGAGGCGTTAC GGTAAGATGACTTCGCGAATGTCTATCTTCTATTCAACCTCTTCTCTCAA TAATGGTAAATAATTGTTGCTGGTTCGGTGTTATCGATTGCCATCGAATT TATAAataactctctctctctctctctctctctctCTTTGAACATCGTAA TCGGTGTAATAAATATCGCTTAATAAAATATCTCAATTCGGTAACGAATA TCAATTCCTCTGTCTCCAGACAGGAATACCATCGTAAATAAACCATATCT CATTCAATTGTTTCCACGAACTTAAACATCCGAACAAAGGTAAAATTTCC TTTCTACTCTTACGTTGACATCTCCCTGTGCACAATGGGATGCTCAACTC GTTGATTGATATCGTATCTTAATTAGGCTGAAACCAAGTAATCTCTACTT AGCTATCCGTCAATACCGCAAATCTATGCCAATCGAGCATATACATACAG CCTTAACCTAGGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027171XLOC_027171Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043475-exon-sc0004273-1491911889:9..526TCONS_00043475-exon-sc0004273-1491911889:9..526Clytia hemisphaericaexon
TCONS_00043475-exon-sc0004273-1510915933:9..526TCONS_00043475-exon-sc0004273-1510915933:9..526Clytia hemisphaericaexon
TCONS_00043475-exon-sc0004273-1575043694:9..526TCONS_00043475-exon-sc0004273-1575043694:9..526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004273supercontigsc0004273:9..526 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.471962 0.276386 0 0.239686 0 0 0.703883 0.317201 0.0676847 0.381035 0.96558 1.03867 1.10377 0.809706 1.12396 2.07632 0.353551 0.847188 0.402739 0.653029 2.57299 3.48555 0.540809 2.87141
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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