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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043228 ID=TCONS_00043228|Name=TCONS_00043228|organism=Clytia hemisphaerica|type=transcript|length=591bp CCACAATGCATCGGGAAAATTTCTCTCATACTTTCGAAGCGGGAGACCGA AAAACTGAAAACGTGATTTGCATGAAAACAAGAAAATGGCCGAGTTGGAA GAGGCAGTTGGTTTTGCTTTTACTTCTGGAATTTGCTTTGTTTAGAAAAG AATGCTGAGTAGGATGTCTGGACCTCGACAAAGATGATTTCCATCGGCAG CACCGGCTCTGTGGTCTTCTTGTGTTGGTCACCACACCACTGGTAAATGT TTCATCAATTTGGTTATTTATTGGCGAATTTTCTTTGAAGAAATCCTATT GCGATAAATAATATGAATCATATTAATGTGAAGatcaaatttcaaagaat ttgCTGGACATGCATATACTACAGTGATGACCCGTGAAAGAATCCAGGac GAAAGGCATCATAACCAAGAAGAAAACGAGCTGCCGAACGAGCTGCTAAT TTTTTTATGCATAAAGCTTTTTATTTTAAGGacaattttttattatattt ccaATAAATCATAAAAGTATGGGATCTTTTTTTCATTGTCTCGTAAAAGT TTGAATATTAGAAGGATGAGAATAGTAAAACTCAAAATCCA Run BLAST on NCBI transcript from alignment at sc0004034:1361..7781+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043228 ID=TCONS_00043228|Name=TCONS_00043228|organism=Clytia hemisphaerica|type=transcript|length=6421bp|location=Sequence derived from alignment at sc0004034:1361..7781+ (Clytia hemisphaerica) CCACAATGCATCGGGAAAATTTCTCTCATACTTTCGAAGCGGGAGACCGA
AAAACTGAAAACGTGATTTGCATGAAAACAAGAAAATGGCCGAGTTGGAA
GAGGCAGTTGGTTTTGCTTTTACTTCTGGAATTTGCTTTGTTTAGAAAAG
AATGCTGAGTAGGATGTCTGTAAGTATAAATAGAGTctccaaattaaatt
tcaagaaatttgatCTTCCCAACCATATCCAAAGATTTCCAAACCATAGA
TGGTTTTTTGATGACATCACTTGATTATATTTTGTTCCAAGTTGCCTgta
aacaaatgatttcatCAAGAATACATCTATATCAAAGGCCAAAGCTGTAC
AAGCAATATATACCTGAGTTTTCAGTGGGCAAGTCTATTTTTGTCAATGG
ACTAGACTTCACCCTATAAAGCCCTTGCTTGGAAAAGTTGGCTAGCCATA
AGTCTTAttaggcagttagtcacactaggaaatcaagctttcaaaaaaaa
caatatcagtcatctacaggatgtattagAAACAataaggatgagagtta
cctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgcacatgtaaatgggtcagtgtttgag
gtccggcaaaatttccgggaaaaagCCTATCCGACAGTCCGCGGATCTAG
ATGGGTCCGGTCTCCcttgtagatctttttcttgggaattttttcttcaa
attagttttcaatgTTGGCTTGGCGCAAACTTTTTCATTTATGGCTCaaa
atttaggtaatttttcacagtttttgaaaatatttgtttcgtTAAAAAGC
GCTGGGTTATTTATTCACAAATGCCTTCAGGAGTTTTGCAGCGCATCTTT
TTGCTTGCGAGtgaagtaaacgatatagcactttcgcagcattaatcttt
gatatggaTTTCCGCGGgaagctagtgtgactaactgttagcGGCCAACG
TCTATATTCAAATCGACTGATCGAACTATCATGATACgggtttcaatgtt
ttgattttgcccagacccgatcaatcaaactaatcgaactgatTTTCTAA
TCGAACTTGATCAAACCTCATCGAACGATTAGAGTTCGAtcaatcgaact
gatcgaacctaATGGAACACTCACAACTTTTGATAAAACttgagttcgat
tagttcgattaggcaaaaaagttcgattagtccCGGATATTTAGTCCGCA
CGAATGCCCTCCCTTGCCGCGCGAACAAACTTTTTAAACCCGCGCGGTAA
ATATTGACGCCTGGTGGATGCGCCCGATCCGATAGCGTTACTGGCGCGAA
TTTACCACAGGTTTCGGAAAAGGATATCGGGAATAGTTTTCCCAATTTTG
AATTCTGACTTTAAATATGAATGTTGAATGGTACGAACTAGTCGAACAAG
TTAGGTTGTCAAACTAATCGAACCGTAATTAGTGATCGAACTTAAGGCAG
CAATCGcaaatatcttcgttttgcGTCGCCCAACGGACTcttgaaaattg
agtagaattgagtcggtgagtcagTAAATTTCTCGGACTTTTTTGTCGTT
GACGGTttcttcgttcaaaaattttattattgccgattttttgcaAGCGA
TTTCTAGTGTAGCGCATTCgcggcattttgactttgtttatcattacatt
ttGGGTCAAAGGTCACAGTCTTCAAAGgttataatttgaaaccacccata
aaacacgcggttgttttggctgctggatGGCTAGCTGTTTCTTTCGAGAA
TCACAGACCAATTTTGagaaaacccgaaaatttttatgaCCGACTGACTC
Accttttagacccaacgaggacgcgaaaatgaagatatttgtgattgtca
CCTAATCGAACAATCTGGaagctcgattagtttgattgatCAAACTCTAA
TCGTTCGAtcaagttcgattagttcgattaaaaTATCCGTacgattagtt
cgattgatcgggtctggttttGCACGGGCGTGCAATCACGCTGGATTACT
GGAGGCAAAAAGACTTAATTTGTTTTTATGAAGGCGAGTGAACATCGATC
AAATTTTCGATAAGTACTTGTTTTTGTATCTCTTCGAAATTTATGAATGG
TAAGCCTATGTACCTCTTAGAAAAGAGACTTAAAGCTCTTTTCAAAAGTC
CTACCAGAGACTTCCTCACAGCAAAAAATTTGCTTGCCTCCAGCTAATGG
TATGGTCTTTTTGCCTCCAGAAAATCAGGCTGCAAGTCACGGCGTGAGTA
AACAAATGACTTATCACAAAAGCCGTCTATTTTTCTTGGGTATATATACC
AGGGGATGTCGATCGGTTATGATCAAATTTGATCGACTTAGCTTCGATTT
ATTTACGATTGGTATTGCTGTTTACGCGACCAACNAAGTGATTAGTCGAA
TCAAACGAAGTCGATCAAAGTGATTGTCGAatcaatcaaagtcaatcaaa
acttcaaaaaaatgtaaatctcCGATTGATTTCGATCGGTTATGATCAAA
TTTGATCGACTTAGCTTCGATTTATTTACGATTGGTATTGCTGTTTACGC
GACCAACTCACTTCAAACTGATTTTTTAATCGAATTAATCAAACTtgatc
gaacctaatcgaacgatTATATTTCGATTAGTCAAACTAATCGAGCTTcc
agattttttccaaaattgtgagtgttcgattaagttcgatcactAATTAC
GGTTCGACTAGTTCGACAACCTGATTTGTTCGATTAGTTCGTACCATTCA
TCATTCATATTCAAAGTCTGACCTCAAAGTGAAAATTGGAATTCAAAATC
GGGAAAACTATTCCCGATATCACTTTCCCAAAACACTCCTGGTAAATTCA
TGCCAGCAACGCTATCAGATCGGGTGCATCTGCCGGGCGTCAATAATTAC
CGTGCATGTTTAAAAAGTTTGTTCACGTGGCATGGACGCTGGCATTCATG
CGGACTAAATATGGCGGTAATCTAATATATGTTCCGTtggcgtcgcccga
ccgactcaccttcaaaacataaatcccGAGTCAGACGAGTCGGAAAAATG
TTGGAAATTTCTAAGTCGAAATACGACGAcgcggtagggccaatacccCC
GTGAGCCAAAAATAAGGTCCACTTTTTAAGGCTAACACATGCGCGCGCGC
ATTTAGTTTGgtaaatcaaagatggcggcaagagATTTTGGAtttactag
atttaaaaaacccgacaaaatttactaGCGACTGGAATTGAAGATATTTT
atgacgcgaacggaacatattttagattgcCGCCTATCCGGGTGAGCTAC
ATATCTGGGTGCGCGAACCAAATATCCGGGAGGGGCAACTTTACACggtc
aaaaataagaaattatgttttctttcgactttgttttgtttttgcccgAG
TGACTCGGTGACTCGTGAGACCGGGGTCCATAAAGGAGAAATTGATAACA
ACATTCAAAACAATCAACAACAACCCCAACAACCTGCTCCCCCTGCTGGC
GCTGCTGTTGACCCTGATTCCCTGATGGGTGGAATATATCAAATTGGAAG
GAAGGTGATAAGGATCTGACATGGCTTGGTGATTTTGCCGGAGAAGAAGG
CTTTTTAATTGACATGCCAGAGAATGTAACTGAGCTGGATTTAACGGATG
ATGTGCTTCAATCAATCACCACTGAGACCAATAGATATGCCAGAACCTAA
CTGGACAAAGCCGATGAACATAATAGATTGAAACCTAATTCCAGATTCAG
ACAATGATCAGAAAATGGtcgctgactctttttaaaaagcgttgatgaca
tctttgagttgtgttttcaacgacgcaaaaaaaaaatcaactttgaatTT
AATCCAAGATCTTAGATTGTTGTCATGGTTACtgttctctgcgttgattg
cgcgctcaGTATaatctcgattggtcggcacagttttgaaaaaactttcg
taTAAGCATATGATAAGCATAATGTGAGGCTAAAAAAAAGTTTGCTAAGC
TTAATGAGCCTCAGCCAAAATTTCTCGTATGCGTATAAGTACTTTAAgga
cagaaactttcgcaagcagaaactttcgcctttggtaagaaattaaacct
gaaaaacgcgaattaacttttcataaaaaagggttgctgatacaggggtg
ttttcATAGGGCAATTTCCCAATGGATTGAAActttaatgtatttttttc
cAACAGGGACCTCGACAAAGATGATTTCCATCGGCAGCACCGGCTCTGTG
GTCTTCTTGGTAATATCATCTGTTCTTCATGATGAGTTGAATGTGGTGTG
TTTTATGCATAAACCTCAGCATTGCTTTCCCAGTGTCGTTTGAGTGTCAT
GGTAaacgccatggcttggcagtTCACGTATGTAAAGTCACAGTctctgt
cagcgccgtgattcctactcctttgggactaggacccattccgatacATT
CTGAAGTTCGGGGAAAATGTAGTACATAGCGTGGTTAGCAGGGAGCAGAA
GGGGCTGTCTTCTCGTATGGCGGTTTTTCTCAGGGGGTGTCGAAATGTTG
CGCTATAAGGCCTTTCACAACAAAATTCTCAGGgccattttctttttaaa
tccaaaaaatatGGTAGTTTTTCGAAAAAAGGGAATATTGGTAGAGAAAT
ATCCCCCCTGGTAAAGAAAGTGCGAATTTGTCAACATTTCAACATTTTAT
CTCCAAGTGTTGGTCACCACACCACTGGTAAATGTTTCATCAATTTGGTT
ATTTATTGGCGAATTTTCTTTGAAGAAATCCTATTGCGATAAATAATATG
AATCATATTAATGTGAAGGTAGGTTCGGACGTTTCAAAGAGCCATAAATT
GAATTTAAACCAGTATAACTTAATTATCCGAAATCGTAAACGAACTAACT
TCGACCTGCATTTTTTATACGATTTTATTCAAGATTTCAACAAGTTCATG
TCTAGTGGGAGAAATTTTACAATTGATCGGGtatgtaatttttttacatt
gaatacGGTGTACACAGGTGTACACATAAAAATAATTCTTAAGAAGAGAA
AGATTTGATTAAAGAACTACACACTTAATAATCTACTGAAATTTTTTCAT
AGatcaaatttcaaagaatttgCTGGACATGCATATACTACAGTGATGAC
CCGTGAAAGAATCCAGGgtagaaattattattttaaaaaatgtgtTGCTT
TTCCATACATAAACCTCGCTACGTTTTAAACGTTATTCTAAAGGCCGTTA
CAGTAAAAAGTGtcataaaatataattaaaatgaTTGATCCTCCTGAATA
TTTTAAATGTAAAGTTCAAACGCAGCagcgttttcattttatttgagtaa
aattcaaaacatataatCAGACGTTTCGGTGTCATCCGATCACCATCATC
agtaaaattgaaatgaaattctgTCATAAAATATCATTTCATATTTTAAG
TTGAAAAcaattttaacttttgttttagacGAAAGGCATCATAACCAAGA
AGAAAACGAGCTGCCGAACGAGCTGCTAATTTTTTTATGCATAAAGCTTT
TTATTTTAAGGacaattttttattatatttccaATAAATCATAAAAGTAT
GGGATCTTTTTTTCATTGTCTCGTAAAAGTTTGAATATTAGAAGGATGAG
AATAGTAAAACTCAAAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00043228-exon-sc0004034-1491911889:1361..1529 | TCONS_00043228-exon-sc0004034-1491911889:1361..1529 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1510915933:1361..1529 | TCONS_00043228-exon-sc0004034-1510915933:1361..1529 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1575043694:1361..1529 | TCONS_00043228-exon-sc0004034-1575043694:1361..1529 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1491911889:6317..6369 | TCONS_00043228-exon-sc0004034-1491911889:6317..6369 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1510915933:6317..6369 | TCONS_00043228-exon-sc0004034-1510915933:6317..6369 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1575043694:6317..6369 | TCONS_00043228-exon-sc0004034-1575043694:6317..6369 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1491911889:6818..6928 | TCONS_00043228-exon-sc0004034-1491911889:6818..6928 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1510915933:6818..6928 | TCONS_00043228-exon-sc0004034-1510915933:6818..6928 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1575043694:6818..6928 | TCONS_00043228-exon-sc0004034-1575043694:6818..6928 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1491911889:7213..7277 | TCONS_00043228-exon-sc0004034-1491911889:7213..7277 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1510915933:7213..7277 | TCONS_00043228-exon-sc0004034-1510915933:7213..7277 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1575043694:7213..7277 | TCONS_00043228-exon-sc0004034-1575043694:7213..7277 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1491911889:7589..7781 | TCONS_00043228-exon-sc0004034-1491911889:7589..7781 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1510915933:7589..7781 | TCONS_00043228-exon-sc0004034-1510915933:7589..7781 | Clytia hemisphaerica | exon |
TCONS_00043228-exon-sc0004034-1575043694:7589..7781 | TCONS_00043228-exon-sc0004034-1575043694:7589..7781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0004034 | supercontig | sc0004034:1361..7781 + |
Blast
The following BLAST results are available for this feature:
|