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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96765_cuf3 >transcript:BL96765_cuf3-protein ID=transcript:BL96765_cuf3-protein|Name=transcript:BL96765_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=318bp
APGGRETPPEPGPPDKPADTSGSLSAAEEGLVERWTQALVQRMSPVVTRD DQRCQACQTSEGNLADFPPVTRGNRRCQACRTIEENMLDSVLAASPGIGA AARERGAARRLSVTEEDMLDRWADRLAERIVSFSQPQVTSTPVKVKHKQR TTRSPDKQDLQTCRADRYERRLAECLADTALPVVPAGEAAQVSPCTPGGS SSRDQHSESPCQMCWEAANDSLAAAQAQIRRVASGTPSGVGPAVQRTGGT QAAATPGGSRGRCSHSARSCRQGCPGCLRVVGELAFQLDMQILQYVFQRR RLYGVTLRNIADKIREEA Run BLAST on NCBI mRNA from alignment at xpSc0039759:14372..16241+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96765_cuf3 ID=transcript:BL96765_cuf3|Name=transcript:BL96765_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1870bp|location=Sequence derived from alignment at xpSc0039759:14372..16241+ (Branchiostoma lanceolatum) CAGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCCGACAAA
CCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCTGGTGGA
ACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAACCAGGG
ACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTGGCGGAC
TTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCGGACGAT
CGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGATTGGAG
CGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACCGAGGAG
GACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGTCAGCTT
CAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACAAGCAAA
GGACGACAAGGTCTCCAGATAAACAAGATTTGCAAAGTACGTCTGTTGTT
TTTTTGTGTTAATATGATTGTTGTGCATTGGTCCAAATGGTTTTTTTTTT
ACATTGGTATTGTTATCCGACCACTTCCTTTAACACATGTTGGACTCCCA
GCATGCCGTGCGGACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGA
CACAGCCCTTCCCGTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGT
GTACCCCTGGTGGATCCTCAAGCAGAGGTGAGAGATATCACACGGACACT
CCAGCAGAAGTACCATCTAAGCAGCTGTTCAGAGGGTGTCGTGACATTTT
CTGGCCGCCCCTTCTTTGTTACCATAATCAAACCAGACAAACGGCAGGGC
CAGAAAAAGTGACGATTTTTCCTCCCAACATCTATCAAATTGAAGATTTA
GTAGCCGAACTCGATAGTTTTTAGAATGTGTTTTTTTTAGGACACCATAT
CCGATGCCGACCTTTGGGTTCTCTGTCTGACTATGTCTATGTGTGTGCCA
GACTGTCTGTGTTTGCTTCTGCGATCGCAAATGCTTGTGCACGGCGTTTC
CCTACAGCCTCGGTGTTGCGCTGTTTGTCTGGGACTGAAGGGCCGAAAAG
CAAGGAAAAGGGATGAATGAAGCCTATCATCTCTGACTGTCTTGTTTTAA
CATCATCAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGCTGGGAGGCG
GCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCGGGTCGCCAG
CGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAGGTGTGTGAT
TTCTATCAAATCGTCATTAATGTCGCAAGCTTGTTCTGAAAGAGACTTTG
CTTTCTAATGCTTTGAGCCTTGGGTTGCGCTGTGTGACTGCATGTAGTGG
GAGAAATATCCCAAACCTGGGCATGGCTCTGGATATTCTACAGTTTGGGA
CACAAGAAGCTCACCGTTTCATTCTCCGCAGCAGGTGGCACACGTACACC
AGCGACCTCTGGCGGTTCGCGCGGGCGGTGCAGCCACAGCGTACGGAGCT
GCCGGCCGGGGTGCCTGAGGGTGCTGGTGGAGATATCCCAAACGGTATCT
GACCATGGTTCTAGATAATGTACAGTTGAGTCGCATTTTTTCATCTTCCC
CAGAAGGTGGCACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGG
TGCAGCCACAGCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCG
GGTGGTGGGCGAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACG
TGTTCCAGCGGAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGAC
AAGATACGGGAGGAGGCCGA Coding sequence (CDS) from alignment at xpSc0039759:14372..16241+ >transcript:BL96765_cuf3 ID=transcript:BL96765_cuf3|Name=transcript:BL96765_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3816bp|location=Sequence derived from alignment at xpSc0039759:14372..16241+ (Branchiostoma lanceolatum) GCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCCGACAAACC CGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCTGGTGGAAC GCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAACCAGGGAC GACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTGGCGGACTT CCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCGGACGATCG AGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGATTGGAGCG GCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACCGAGGAGGA CATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGTCAGCTTCA GTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACAAGCAAAGG ACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATGCCGTGCGGACCG GTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAGCCCTTCCCGTGG TGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACCCCTGGTGGATCC TCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGCTGGGAGGC GGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCGGGTCGCCA GCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAGGTGGCACA CAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTGCAGCCACAGCGC GCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGGTGGTGGGCGAGC TCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTGTTCCAGCGGAGG CGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAAGATACGGGAGGA GGCCGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCCGACA AACCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCTGGTG GAACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAACCAG GGACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTGGCGG ACTTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCGGACG ATCGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGATTGG AGCGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACCGAGG AGGACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGTCAGC TTCAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACAAGCA AAGGACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATGCCGTGCGG ACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAGCCCTTCCC GTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACCCCTGGTGG ATCCTCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGCTGGG AGGCGGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCGGGTC GCCAGCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAGGTGG CACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTGCAGCCACA GCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGGTGGTGGGC GAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTGTTCCAGCG GAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAAGATACGGG AGGAGGCCGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCCTCCC GACAAACCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGGGGCT GGTGGAACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTCGTAA CCAGGGACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAACCTG GCGGACTTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCATGTCG GACGATCGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCGGGGA TTGGAGCGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGTTACC GAGGAGGACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGATCGT CAGCTTCAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAGCACA AGCAAAGGACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATGCCGT GCGGACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAGCCCT TCCCGTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACCCCTG GTGGATCCTCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGATGTGC TGGGAGGCGGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCCGCCG GGTCGCCAGCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGGACAG GTGGCACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTGCAGC CACAGCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGGTGGT GGGCGAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTGTTCC AGCGGAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAAGATA CGGGAGGAGGCCGCCCCGGGGGGTCGGGAGACGCCGCCAGAGCCCGGCCC TCCCGACAAACCCGCGGACACCAGCGGGAGCCTGTCCGCCGCCGAGGAGG GGCTGGTGGAACGCTGGACGCAGGCGCTCGTACAGCGCATGTCCCCGGTC GTAACCAGGGACGACCAGAGATGCCAGGCGTGTCAGACGAGCGAGGGGAA CCTGGCGGACTTCCCGCCTGTAACCAGGGGCAACCGCCGGTGTCAGGCAT GTCGGACGATCGAGGAGAACATGTTGGACTCTGTCCTGGCCGCGAGCCCG GGGATTGGAGCGGCCGCGCGGGAGAGAGGAGCGGCCCGGCGCCTGTCCGT TACCGAGGAGGACATGTTGGACCGGTGGGCGGACCGGCTGGCCGAGAGGA TCGTCAGCTTCAGTCAGCCTCAGGTGACCTCTACTCCCGTCAAGGTCAAG CACAAGCAAAGGACGACAAGGTCTCCAGATAAACAAGATTTGCAAACATG CCGTGCGGACCGGTACGAGCGCCGCCTGGCGGAGTGTCTGGCCGACACAG CCCTTCCCGTGGTGCCTGCCGGGGAGGCTGCACAGGTGTCCCCGTGTACC CCTGGTGGATCCTCAAGCAGAGACCAGCATTCCGAGTCGCCGTGCCAGAT GTGCTGGGAGGCGGCGAACGACAGTCTGGCGGCGGCGCAGGCGCAGATCC GCCGGGTCGCCAGCGGGACACCTAGCGGAGTGGGACCGGCAGTGCAGCGG ACAGGTGGCACACAGGCAGCAGCGACCCCTGGCGGTTCTCGCGGGCGGTG CAGCCACAGCGCGCGGAGCTGCCGGCAGGGCTGTCCCGGGTGCCTGCGGG TGGTGGGCGAGCTCGCCTTCCAGCTGGACATGCAGATCCTGCAGTACGTG TTCCAGCGGAGGCGGCTGTACGGCGTCACGCTCAGGAACATCGCGGACAA GATACGGGAGGAGGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
xpSc0039759 | genome | xpSc0039759:14372..16241 + |
Properties
Property Name | Value |
Transcript id | BL96765_cuf3 |
Biotype | protein_coding |
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