transcript:BL96122_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96122_evm1
Unique Nametranscript:BL96122_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96122_evm1

>transcript:BL96122_evm1-protein ID=transcript:BL96122_evm1-protein|Name=transcript:BL96122_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=421bp
MVVPVVSTASGKVRGTVQYTNDLPDKPVYTFLGIPYAAPPVGDLRFRSPK
PAVSWEGVRDATELGAYCPQDQDAFSFYPIQLKHYKFDEDCLTXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXQYSKSNLNNITSAIRRTYREGDN
PDDPHALEYQFTQAFGDQMFVAPTVLAASKHAAAGQKVYLYENQYAPSSP
AAVRPDWVGCDHSDDVMMVSGAAFLDVPLKVGALLPFSSDDKQVSMGMMA
YWANFARTGNPSDRTGGPADSPTVPEWPQYTPDNPAYMKLGLTSSADVEL
KSEKMKLWNDVIPKLAASSRL
Run BLAST on NCBI

mRNA from alignment at Sc0000541:4710..7361+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96122_evm1 ID=transcript:BL96122_evm1|Name=transcript:BL96122_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2652bp|location=Sequence derived from alignment at Sc0000541:4710..7361+ (Branchiostoma lanceolatum)
ATGGTGGTCCCTGTTGTATCCACGGCCAGCGGCAAGGTGCGAGGAACGGT
GCAGTACACAAACGACCTGCCGGACAAACCTGTCTACACCTTCCTCGGCA
TCCCGTACGCAGCGCCCCCTGTCGGAGACCTACGGTTCCGGTCTCCCAAG
CCAGCCGTTTCGTGGGAGGGAGTCAGAGATGCTACTGAACTGGGCGCCTA
CTGTCCTCAGGATCAAGATGCCTTCAGCTTCTACCCCATTCAGCTCAAAC
ACTACAAATTCGATGAAGACTGCCTAACACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTCGGTTTGTCCGC
TGGGGGTACTAGTGTCTGTTACCACCTGGTTTCACCTCTCAGTAAGGGTC
TGTTCCAGCGGGCTATCTCTCAGAGTGGGGTCTGTCAGACACTGGATGTC
GTTTCAAATCCACAGGAGAGAGCAGTTATGTTGGCAGAAGAATTGGGATG
TGACACAAAGAATACAGCCAGCATGGTGGAGGGCCTTAGGGAGAAGCCAG
TAGACCAAATTGTCACCTGTAGCAAACGTCTTTTGAAGAAGCTAGGTTCC
AAAGGGGAACTTATGGCTTTTGGCCCTGTTGTTGATGGGAAATTTCTTCC
AGCAAGCCCTTCTGATGTGTTTGATCTGGGGAGGGCACACACTGTGGACT
ATCTTCTAGGCGTGGGCAACCACGAGTATGGGTTTCAGCTGCCATCCGAA
CTTATCCGAGGTTTTGGACGAGGAATAACCGAAGAAAGGTTTCTTCTCAG
GCTGAAAAAGAGGATGGGTGCAGTCTATCCGGTAAGTTTAGCACCTGTGT
TTTGTTATACCTTTTTTCCTTCTTTTTGGTCTCTTTAACATTAACCTTTG
CTTTACAGATGTTAGTTCGATTAATAATACAGTATGTTTATTTCTTACAG
AAGTCCAACCTGAACAACATCACTTCAGCCATACGCAGGACCTACAGAGA
AGGTGACAACCCAGATGACCCACATGCTTTAGAGTACCAGTTCACCCAGG
CCTTTGGAGATCAAATGTTTGTTGCTCCGACTGTTCTCGCTGCAAGCAAA
CATGCTGGTGAGTCCATTTCTTTTATTGGTCAGAAGTTACCTGTGCAATG
GTAGTCTTTCTAGTGCTGAATTGGTGCCGGGTTTACAATTGCATAATACA
TATGGGCAACAGGTACATATTTGCTCCACACTTGCATTTTGTAGAACTGT
CGCAAGGGAATGCCATTCAGCACCAGAGGGTGACCTCAATACTCTTTTCA
AGAATGACAAAATCAAATCTTGTTTTGTACTTTACCTCATTTCATTGGGA
AGTAAGATATTTGTCTGGTCCAAATAGTATAGAAGATGCATCCTCAATAT
GACAAAATCATTTTTCAGCCGCTGGACAGAAAGTCTACCTGTATGAGAAC
CAATATGCGCCCTCTAGCCCCGCGGCTGTTCGGCCAGACTGGGTTGGGTG
CGACCATTCAGATGATGTTATGATGGTGTCCGGCGCAGCCTTCCTGGACG
TGCCTTTGAAAGTTGGTGCTCTGTTGCCGTTCTCCTCTGATGACAAGCAG
GTCAGCATGGGCATGATGGCTTACTGGGCTAACTTTGCTAGAACAGGGTA
AGTGTTTGCTTTACGCTTAATTAATCACTGTATTTTAAATGGCACTTCAT
AAAATGGATTCCTTTCAATTTGTCTTTCTTCCTAGTTAATGCATATCATT
TTCTTATCAGTCCATTCCTTTAATAGTGGCATCGTGTTAGCATAATGGTT
AGCGTGCTTCAATTCAAATTCCCTGACATGCCAGCGATGTTGTGCCCTTG
GGAAATGGACTTTATACAACTTGTTTCACTCAAACCAGGTGTAAAAATGG
GTACCTGACTTCAGTTGGGGAGGTAAAAGGTGGTGGAAGGAGGGAGTTGG
GCTCTGCCTTCCAAAACCTTAGCCTAGACACAGTGGATAATAACTCATGC
CACCTTTACCCTTTACCATTCCTTTCATTCAGCTCTTATACTACAACAGA
TCATGGGCTGTGATCTTTGTAGGATGAAAATGTACTAAATTCAAAGTATT
CCTCCATCCCAGGAACCCGTCTGACCGTACCGGCGGGCCAGCTGACAGCC
CCACGGTACCAGAGTGGCCCCAGTACACACCTGACAACCCCGCCTACATG
AAGCTGGGTCTGACGTCATCAGCTGACGTAGAACTGAAGTCGGAGAAGAT
GAAACTGTGGAATGACGTCATCCCCAAGCTCGCAGCATCTTCCAGGTTGT
GA

Coding sequence (CDS) from alignment at Sc0000541:4710..7361+

>transcript:BL96122_evm1 ID=transcript:BL96122_evm1|Name=transcript:BL96122_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=5064bp|location=Sequence derived from alignment at Sc0000541:4710..7361+ (Branchiostoma lanceolatum)
ATGGTGGTCCCTGTTGTATCCACGGCCAGCGGCAAGGTGCGAGGAACGGT
GCAGTACACAAACGACCTGCCGGACAAACCTGTCTACACCTTCCTCGGCA
TCCCGTACGCAGCGCCCCCTGTCGGAGACCTACGGTTCCGGTCTCCCAAG
CCAGCCGTTTCGTGGGAGGGAGTCAGAGATGCTACTGAACTGGGCGCCTA
CTGTCCTCAGGATCAAGATGCCTTCAGCTTCTACCCCATTCAGCTCAAAC
ACTACAAATTCGATGAAGACTGCCTAACACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTCGAAGTCCAACC
TGAACAACATCACTTCAGCCATACGCAGGACCTACAGAGAAGGTGACAAC
CCAGATGACCCACATGCTTTAGAGTACCAGTTCACCCAGGCCTTTGGAGA
TCAAATGTTTGTTGCTCCGACTGTTCTCGCTGCAAGCAAACATGCTGCCG
CTGGACAGAAAGTCTACCTGTATGAGAACCAATATGCGCCCTCTAGCCCC
GCGGCTGTTCGGCCAGACTGGGTTGGGTGCGACCATTCAGATGATGTTAT
GATGGTGTCCGGCGCAGCCTTCCTGGACGTGCCTTTGAAAGTTGGTGCTC
TGTTGCCGTTCTCCTCTGATGACAAGCAGGTCAGCATGGGCATGATGGCT
TACTGGGCTAACTTTGCTAGAACAGGGAACCCGTCTGACCGTACCGGCGG
GCCAGCTGACAGCCCCACGGTACCAGAGTGGCCCCAGTACACACCTGACA
ACCCCGCCTACATGAAGCTGGGTCTGACGTCATCAGCTGACGTAGAACTG
AAGTCGGAGAAGATGAAACTGTGGAATGACGTCATCCCCAAGCTCGCAGC
ATCTTCCAGGTTGTGAATGGTGGTCCCTGTTGTATCCACGGCCAGCGGCA
AGGTGCGAGGAACGGTGCAGTACACAAACGACCTGCCGGACAAACCTGTC
TACACCTTCCTCGGCATCCCGTACGCAGCGCCCCCTGTCGGAGACCTACG
GTTCCGGTCTCCCAAGCCAGCCGTTTCGTGGGAGGGAGTCAGAGATGCTA
CTGAACTGGGCGCCTACTGTCCTCAGGATCAAGATGCCTTCAGCTTCTAC
CCCATTCAGCTCAAACACTACAAATTCGATGAAGACTGCCTAACACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA
TATTCGAAGTCCAACCTGAACAACATCACTTCAGCCATACGCAGGACCTA
CAGAGAAGGTGACAACCCAGATGACCCACATGCTTTAGAGTACCAGTTCA
CCCAGGCCTTTGGAGATCAAATGTTTGTTGCTCCGACTGTTCTCGCTGCA
AGCAAACATGCTGCCGCTGGACAGAAAGTCTACCTGTATGAGAACCAATA
TGCGCCCTCTAGCCCCGCGGCTGTTCGGCCAGACTGGGTTGGGTGCGACC
ATTCAGATGATGTTATGATGGTGTCCGGCGCAGCCTTCCTGGACGTGCCT
TTGAAAGTTGGTGCTCTGTTGCCGTTCTCCTCTGATGACAAGCAGGTCAG
CATGGGCATGATGGCTTACTGGGCTAACTTTGCTAGAACAGGGAACCCGT
CTGACCGTACCGGCGGGCCAGCTGACAGCCCCACGGTACCAGAGTGGCCC
CAGTACACACCTGACAACCCCGCCTACATGAAGCTGGGTCTGACGTCATC
AGCTGACGTAGAACTGAAGTCGGAGAAGATGAAACTGTGGAATGACGTCA
TCCCCAAGCTCGCAGCATCTTCCAGGTTGTGAATGGTGGTCCCTGTTGTA
TCCACGGCCAGCGGCAAGGTGCGAGGAACGGTGCAGTACACAAACGACCT
GCCGGACAAACCTGTCTACACCTTCCTCGGCATCCCGTACGCAGCGCCCC
CTGTCGGAGACCTACGGTTCCGGTCTCCCAAGCCAGCCGTTTCGTGGGAG
GGAGTCAGAGATGCTACTGAACTGGGCGCCTACTGTCCTCAGGATCAAGA
TGCCTTCAGCTTCTACCCCATTCAGCTCAAACACTACAAATTCGATGAAG
ACTGCCTAACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCAATATTCGAAGTCCAACCTGAACAACATCACTTCAG
CCATACGCAGGACCTACAGAGAAGGTGACAACCCAGATGACCCACATGCT
TTAGAGTACCAGTTCACCCAGGCCTTTGGAGATCAAATGTTTGTTGCTCC
GACTGTTCTCGCTGCAAGCAAACATGCTGCCGCTGGACAGAAAGTCTACC
TGTATGAGAACCAATATGCGCCCTCTAGCCCCGCGGCTGTTCGGCCAGAC
TGGGTTGGGTGCGACCATTCAGATGATGTTATGATGGTGTCCGGCGCAGC
CTTCCTGGACGTGCCTTTGAAAGTTGGTGCTCTGTTGCCGTTCTCCTCTG
ATGACAAGCAGGTCAGCATGGGCATGATGGCTTACTGGGCTAACTTTGCT
AGAACAGGGAACCCGTCTGACCGTACCGGCGGGCCAGCTGACAGCCCCAC
GGTACCAGAGTGGCCCCAGTACACACCTGACAACCCCGCCTACATGAAGC
TGGGTCTGACGTCATCAGCTGACGTAGAACTGAAGTCGGAGAAGATGAAA
CTGTGGAATGACGTCATCCCCAAGCTCGCAGCATCTTCCAGGTTGTGAAT
GGTGGTCCCTGTTGTATCCACGGCCAGCGGCAAGGTGCGAGGAACGGTGC
AGTACACAAACGACCTGCCGGACAAACCTGTCTACACCTTCCTCGGCATC
CCGTACGCAGCGCCCCCTGTCGGAGACCTACGGTTCCGGTCTCCCAAGCC
AGCCGTTTCGTGGGAGGGAGTCAGAGATGCTACTGAACTGGGCGCCTACT
GTCCTCAGGATCAAGATGCCTTCAGCTTCTACCCCATTCAGCTCAAACAC
TACAAATTCGATGAAGACTGCCTAACACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATATTCGAAGTCCAACCTG
AACAACATCACTTCAGCCATACGCAGGACCTACAGAGAAGGTGACAACCC
AGATGACCCACATGCTTTAGAGTACCAGTTCACCCAGGCCTTTGGAGATC
AAATGTTTGTTGCTCCGACTGTTCTCGCTGCAAGCAAACATGCTGCCGCT
GGACAGAAAGTCTACCTGTATGAGAACCAATATGCGCCCTCTAGCCCCGC
GGCTGTTCGGCCAGACTGGGTTGGGTGCGACCATTCAGATGATGTTATGA
TGGTGTCCGGCGCAGCCTTCCTGGACGTGCCTTTGAAAGTTGGTGCTCTG
TTGCCGTTCTCCTCTGATGACAAGCAGGTCAGCATGGGCATGATGGCTTA
CTGGGCTAACTTTGCTAGAACAGGGAACCCGTCTGACCGTACCGGCGGGC
CAGCTGACAGCCCCACGGTACCAGAGTGGCCCCAGTACACACCTGACAAC
CCCGCCTACATGAAGCTGGGTCTGACGTCATCAGCTGACGTAGAACTGAA
GTCGGAGAAGATGAAACTGTGGAATGACGTCATCCCCAAGCTCGCAGCAT
CTTCCAGGTTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96122gene:BL96122Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96122_evm1-E1BL96122_evm1-E1-1564476830-479902Branchiostoma lanceolatumexon
BL96122_evm1-E2BL96122_evm1-E2-1564476830-479904Branchiostoma lanceolatumexon
BL96122_evm1-E3BL96122_evm1-E3-1564476830-479906Branchiostoma lanceolatumexon
BL96122_evm1-E4BL96122_evm1-E4-1564476830-479908Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96122_evm1transcript:BL96122_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000541genomeSc0000541:4710..7361 +
Properties
Property NameValue
Transcript idBL96122_evm1
Biotypeprotein_coding