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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000402 ID=TCONS_00000402|Name=TCONS_00000402|organism=Clytia hemisphaerica|type=transcript|length=3033bpRun BLAST on NCBI protein sequence of TCONS_00000402-protein >TCONS_00000402-protein ID=TCONS_00000402-protein|Name=TCONS_00000402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp MYQQGSSGYYGDGGGQYHDEGNQNQYGHNYRDYRMNDQSIKGKIEQKYWKRun BLAST on NCBI transcript from alignment at sc0000002:119386..125916+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000402 ID=TCONS_00000402|Name=TCONS_00000402|organism=Clytia hemisphaerica|type=transcript|length=6531bp|location=Sequence derived from alignment at sc0000002:119386..125916+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:119386..125916+ >TCONS_00000402 ID=TCONS_00000402|Name=TCONS_00000402|organism=Clytia hemisphaerica|type=CDS|length=19170bp|location=Sequence derived from alignment at sc0000002:119386..125916+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000402 vs. Swiss-Prot (Human)
Match: ICA69 (Islet cell autoantigen 1 OS=Homo sapiens GN=ICA1 PE=1 SV=2) HSP 1 Score: 302.753 bits (774), Expect = 2.837e-91 Identity = 141/268 (52.61%), Postives = 193/268 (72.01%), Query Frame = 1
Query: 337 GNQNQYGHNYRDYRMNDQSIKGKIEQKYWKTKQKAIEKLGKDQDEFVIAGDAEVDARLEAFQHIKITCMQLMAAIECYQNKIFALSQDENEMGRFLKDQGSLDKTKAGKMMIAVGKAQSFAAQQRLGMRSSLARLYSEIETFRFRAIQDTQLTVTKMETSRSEYRARLLWMADISKELDPDQFKRLDKFRDVQMQVKLAKKKFDQLKGDVIQKIDLLSASRCNLLSATLEPYQSSMVKFLNTTAKSYNTVHEEYKGHPSYKFNILKNI 1140
G++ Y + +D D+S+ K++QKYW+TKQ I+ GK +DE V+A DA++DA+LE F I+ TC+ L AI YQ +I LSQ+ENE+G+FL+ QG DKT+AGKMM A GKA F++QQRL +R+ L R + E+ETFR RAI DT LTV +ME R+EYR LLWM D+S+ELDPD +K+++KFR VQ QV+LAKK FD+LK DV QK+DLL ASRCNLLS L YQ++++ F T+ + +HE +KG+ Y+F LK++
Sbjct: 3 GHKCSYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALCFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELDPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHFWEKTSHTMAAIHESFKGYQPYEFTTLKSL 270 The following BLAST results are available for this feature:
BLAST of TCONS_00000402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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