|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004047 ID=TCONS_00004047|Name=TCONS_00004047|organism=Clytia hemisphaerica|type=transcript|length=10132bp transcript from alignment at sc0000039:558385..578975+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004047 ID=TCONS_00004047|Name=TCONS_00004047|organism=Clytia hemisphaerica|type=transcript|length=20591bp|location=Sequence derived from alignment at sc0000039:558385..578975+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004047 vs. Swiss-Prot (Human)
Match: TRNK1 (TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4) HSP 1 Score: 352.058 bits (902), Expect = 1.098e-96 Identity = 233/659 (35.36%), Postives = 356/659 (54.02%), Query Frame = 3
Query: 3627 TWEVECTQEVYRVLRNXXXXXXXXXXXXXXXRQLATGYWPRELHKRLEGVKNGILLYEAKINKASRIIWEVSVSFSERRS------MSMEQEFCSILDHDESGAIYEDKIRIWNIALQHDDVPKMIEKIQHSHDRGEHCILRKNLEVFRQKQSLTEYDNQKH-PNVYMSENVRDLVNKAVANQSQLALERKNFLFVPAASPNRNEFNILKFYSFTSQVASRILNVSNANYDFPFQVSPLEYAVIRLEPKHRCCILLLGRSGTGKTTCCLYRLWSQFLHYWRTASLSGPQLPKFKTLVSVEEQDEVNREETG-----------------VELTEHVGDVLHDEKPSTTYRSPA--NASNQMCCHDEIKXXXXXXXXXXXXXXXXXXXXXXXXHLRQVLVTKNEVLCNEIRKNFKELSIGSPVTTYEEIEQIESMKIEDIKPENYPLFVTAKDLLMLIDNSLPGEPFFERDEDGNVKHEIPGWGKNKIHLSFLPNIXXXXXXXXXXXXXXXNNPQDGSLATDLNXXXXXXXXXXXXHEVTYEVFANEIWPKLIKKRNKEEKSCHPSLVWMEIKSFIKGSAEAFMSKDKEGCLTGYLTKEEYENIGRKRAPNFEGNRDDIYDIFLRYMKFKRYSPYFDEMDLHFNLYKRLKETLVPEWAFHQ 5525
TWE+ECT E+ + L +K + +KKKI+ I+QL G W + L KRL+ +K I L+EAK++K +R++WE+++ FS R S ++ EQ C++ ++SG IY + IRIW+I L H + I+ I ++++RG C+LRK L+ + Q QK P Y+ + +++ E N + P AS E+NI+KF+SF++ +A ILN + A ++PF+V LEYAVI L P+ I+L+GRSGTGKTTCCLYRLW +F YW A +G L + + + E +E G VE E + + ++ PA + ++C + EHL Q+ VTKN VLC E+++NF ELS + T++ + K++D++ EN+PLFVT+K LL+L+D SLP +PFF R+EDG++K I GW + S +P+ ++D+ E E DG + + + + VT+EVF NEIWPK+ K R + +P+L+W EIKSF+KGS EA C G LT+E Y+ +GRKR PNF+ +R +IY +F Y + + YFDE D+ +N+ +RL + V W+ H+
Sbjct: 789 TWEIECTSEMLKKLSSKVMTKVIKKKIILAIQQLGNGEWTQGLQKRLKHLKGSIQLFEAKLDKGARMLWELAIDFSPRCSENPEKIIATEQNTCAM---EKSGRIYTEIIRIWDIVLDHCKLADSIKAICNAYNRGLSCVLRKKLKGINKGQVSANMKIQKRIPRCYVEDT-----------EAEKGREHVNPEYFPPASAVETEYNIMKFHSFSTNMAFNILNDTTATVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKKFHVYWEKAEQAGSPLLAKQVWLKRRLEVEPGKESPGGEEEEEEEDEEEEDSIEVETVESIDEQEYEACAGGAGVEPAGDGQAAEVCAPEH---------------------PHQLEHLHQIFVTKNHVLCQEVQRNFIELSKSTKATSHYKPLDPNIHKLQDLRDENFPLFVTSKQLLLLLDASLP-KPFFLRNEDGSLKRTIIGWSAQE--ESTIPSWQEDEEEAEV----------DGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGRT----AYNPALIWKEIKSFLKGSFEAL------SCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLYQQIRSQKGYFDEEDVLYNISRRLSKLRVLPWSIHE 1389 HSP 2 Score: 349.747 bits (896), Expect = 5.177e-96 Identity = 277/836 (33.13%), Postives = 417/836 (49.88%), Query Frame = 2
Query: 5534 KRLKETLVPEWAFHQVYVDEVQDFTQSELLLLIRSSANPNAMFFTGDTAQSIMSGVAFRFCDLSSLYKAAKDEFKSLKLQSPITVPSKVHQLTHNYRSHAGXXXXXXXXXXXXXXXFPTSIEVNAKPDIGLFPGSSPVILETDDFSELAILLQGSRRQTSAIEFGAHQVVLVQNEKSKESLPAELSYGLVLSIYEAKGLEFDDVLLYNFFKDSPAFDEWRVIASKSNEIEVDVTESDSSLQVIPNDVDYSS--RPLDFDYNKHKLLNSELKKLYTAVTRARVNVWIFDEDKKKRAPMFD-FXXXXXXXXXXXXEDGAVRDHHFAEQSSEEQWDKQGKYFFTKGLWKLAMKCAIKADNDQLREKCQAKLKFELAYRKAKDGWDSKKGKIAKTTILNGFKICALSFLKCGLVGDAVTSLQNAHANDFLALLYEKQSKFGDAARLYKKAGKKEDAIRCYKADNNHRSVMSLLKSENKFIEAL----EYQQQHSLNEVDSSELMAKALRFYED-------SNNIQTIRQILKFGTLNFQISYLRSRDDMLDDLVQLYQEHKMMQQLARLYKDQHNYVEAAKIAVNIDEKLSYLILAFKEYTLKPLDVAKEELIE----LFASVFSLINDVTSLSLKAEAYYCYAFLTKEAKYLFDAIKGFEKDPVGQLVVFKLLITFDKVNRN-GVFKNMYESY-------KKFYGLVQSIFDLVANLANAC------TDKTFVNETLEKIGFGRSGRDYLVFEQSS----LKYYYKLGSMPSSLPSGKITKVKAMEIAAKILLSIFKAVIFNFRQLVTQEVNTNM--ICQ---VPNHCSDRHCRSLHEP 7918
+RL + V W+ H++Y DE+QDFTQ+EL LL++ +PN+MF TGDTAQSIM GVAFRF DL SL+ A ++ Q + P K+HQL NYRSH+GIL L+S ++ LL+ FP S + + D GLF G P +LE+ S+LAILL+G++R+T IEFGAHQV+LV NE +KE +P EL LVL+IYEAKGLEFDDVLLYNFF DS A+ EW++I+S + D E + L +P D SS R L + +KLLN ELK+LYTA+TRARVN+WIFDE+++KRAP F F+ + + V E+ D F + S+ +W QG Y+ WK+A KC K + K K LA+ A K K++ + A ++L+C ++ L A A L E+ K DAA YK++ +DA RC++ + + E F EA +Y++ + S+L A +FY + +N ++ + +L + Q+ +L+SR L + L ++ A L K +EAA++ + D + S L+ A + L+VA++ IE + + LS AEA++ + ++ + L DA FK FD +N + GV + +YE+ +K GL +++ +L A +K V E G + Y Q+ L+ + L K TK + + ++ L++ K ++ Q+ + +C V C D +C H P
Sbjct: 1375 RRLSKLRVLPWSIHELYGDEIQDFTQAELALLMKCINDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASR--NTIDKQCAVRKPKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPR-DSGLFDGPKPTVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANETAKEKIPEELGLALVLTIYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFT-PTSTDSREENRPLVEVPLDKPGSSQGRSLMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKCYQKGGAFE-------KEKLALAHDTA---LSMKSKKVSPKEKQLEYLELAKTYLECKEPTLSLKCLSYAKEFQLSAQLCERLGKIRDAAYFYKRSQCYKDAFRCFEQIQEFDLALKMYCQEELFEEAAIAVEKYEEMLKTKTLPISKLSYSASQFYLEAAAKYLSANKMKEMMAVLSKLDIEDQLVFLKSR-KRLAEAADLLNREGRREEAALLMKQHGCLLEAARLTADKDFQASCLLGAAR------LNVARDSDIEHTKDILREALDICYQTGQLSGIAEAHFLQGVILRDFQKLRDAF-------------FK----FDTLNHSAGVVEALYEAASQCEAEPEKILGLAPGGLEILLSLVRALKRVTNNAEKEMVKSCFEFFGISQVDAKYCQIAQNDPGPILRIIFDLDLNLRE----KKTKDHFLIMTDQVKLALNKHLLGRLCQITRSLLGKTYRGVCMRFIVGLKCEDENCEHFHRP 2168 The following BLAST results are available for this feature:
BLAST of TCONS_00004047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.