transcript:BL84490_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL84490_cuf0
Unique Nametranscript:BL84490_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL84490_cuf0

>transcript:BL84490_cuf0-protein ID=transcript:BL84490_cuf0-protein|Name=transcript:BL84490_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=110bp
MNFLKITETCETGRFKMISSLLGQYLSFYKIYIICHVEGYGYACQIQDCI
LYEKERQSLFKSIQLDKRCKTISKQDTFRYLMSCTNVNVMDEVCNYVAMC
FKKREESTRA
Run BLAST on NCBI

mRNA from alignment at Sc0000377:179295..180078-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL84490_cuf0 ID=transcript:BL84490_cuf0|Name=transcript:BL84490_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=784bp|location=Sequence derived from alignment at Sc0000377:179295..180078- (Branchiostoma lanceolatum)
TGAAACCTTAGTTTGTAAAAATGAATTTTTTAAAGATAACAGAGACTTGT
GAGACAGGGAGGTTTAAAATGATTTCAAGCCTTCTTGGTCAATACTTGAG
TTTTTACAAAATTTACATAATCTGTCATGTAGAGGGGTACGGCTATGCGT
GCCAGATTCAAGACTGTATATTGTATGAAAAAGAACGCCAGTCTCTGTTC
AAATCAATTCAGCTGGACAAGAGATGTAAGACAATATCAAAGCAGGATAC
TTTTAGATACTTGATGTCATGCACAAATGTTAATGTAATGGACGAAGTTT
GTAATTATGTCGCCATGTGTTTCAAAAAGAGAGAAGAATCCACTAGAGCC
TAGATATAGTGTAGGATATTTAGTATAGTGCTTAGTATTGTATAAGACGT
CAATGTTAACGTTATTCTTATTATTCTATTCTCTCAATTACCCCATGTAT
GGCCCTCTGTGGCTTCCTGTGCATTTATCCCCCTGGGGAATGAACATGCA
AAAAAGATTATAATATTTGTTATCTTCAGTGGATAATCTTTTTTATGCAT
CCCCCGAATATGCAGGCCATTTTACATATTTTGAAGTTTGTTGCAAGGCA
TCACCCAACCTGTGTGGGGAATGTATTCATCTCCAAGCAGATATTCGGGG
GCAAAATCGAGACTGTTTTTTTATTATTTTTATTTAACAACGTAAATAAG
AAATACAGACAAGATGGCGGCGCACTCAAGTTAATACAACTTATATTGAC
GCCGTCATCGGAAAAGAAAAGGATATAACTAAAC

Coding sequence (CDS) from alignment at Sc0000377:179295..180078-

>transcript:BL84490_cuf0 ID=transcript:BL84490_cuf0|Name=transcript:BL84490_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=333bp|location=Sequence derived from alignment at Sc0000377:179295..180078- (Branchiostoma lanceolatum)
ATGAATTTTTTAAAGATAACAGAGACTTGTGAGACAGGGAGGTTTAAAAT
GATTTCAAGCCTTCTTGGTCAATACTTGAGTTTTTACAAAATTTACATAA
TCTGTCATGTAGAGGGGTACGGCTATGCGTGCCAGATTCAAGACTGTATA
TTGTATGAAAAAGAACGCCAGTCTCTGTTCAAATCAATTCAGCTGGACAA
GAGATGTAAGACAATATCAAAGCAGGATACTTTTAGATACTTGATGTCAT
GCACAAATGTTAATGTAATGGACGAAGTTTGTAATTATGTCGCCATGTGT
TTCAAAAAGAGAGAAGAATCCACTAGAGCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL84490gene:BL84490Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL84490_cuf0-E1BL84490_cuf0-E1-1564476830-452559Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL84490_cuf0transcript:BL84490_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000377genomeSc0000377:179295..180078 -
Properties
Property NameValue
Transcript idBL84490_cuf0
Biotypeprotein_coding