TCONS_00004044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004044
Unique NameTCONS_00004044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004044 ID=TCONS_00004044|Name=TCONS_00004044|organism=Clytia hemisphaerica|type=transcript|length=628bp
CAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAATCTCC
ATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGTGATC
ATTTTGTCAATTCTATTCAACAATTCTGTCAAGATCTTTCAATACCATTT
GTCAAATTGATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACGCGAG
AATTGTTGAGCAATTATTCAACCTCATCATTAATAACAACATTTTGTTGA
ATGATCATCAAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTGGATG
GAACTCATTGATGTTTATTTGAATAAGCAGCACATTGAAATGATGCATCA
GCCACTTTTTATTGCCTTGATGATAAAAACAACGGCGACTGATCATAAGC
ATGCAAGAAATTGCTGGCTCCTTGTTGGAAAGGAAGACTTTTTTGATCAG
AAATCACTTCATTTTGCACACAATGCTTTTTCAATTGTTCAGAACCTGGA
TTTCCATCTGGCTTATTCTGGCAATACAACCATTCAAATGTTAAGAAATG
AATTGAAGATTTACTTGACAGCAACAAACTTCCATTTTTGTTATGAAGGA
GACTTTACTTTGTGGGTATCTGATATTG
Run BLAST on NCBI

protein sequence of TCONS_00004044-protein

>TCONS_00004044-protein ID=TCONS_00004044-protein|Name=TCONS_00004044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
QMDVISMLTKLELKESPLENVVTFGRFMKAFGDHFVNSIQQFCQDLSIPF
VKLINTAVEYVLKDHARIVEQLFNLIINNNILLNDHQIQSRVVGLVHFWM
ELIDVYLNKQHIEMMHQPLFIALMIKTTATDHKHARNCWLLVGKEDFFDQ
KSLHFAHNAFSIVQNLDFHLAYSGNTTIQMLRNELKIYLTATNFHFCYEG
DFTLWVSDI
Run BLAST on NCBI

transcript from alignment at sc0000039:554528..556083+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004044 ID=TCONS_00004044|Name=TCONS_00004044|organism=Clytia hemisphaerica|type=transcript|length=1556bp|location=Sequence derived from alignment at sc0000039:554528..556083+ (Clytia hemisphaerica)
CAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAATCTCC ATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGTGATC ATTTTGTCAATTCTATTCAACAATTCTGTCAAGTAAGTGCTTATTCTCAA TGTGTTTTTTAAGAGAACGATTGACAGTTACAGGCTTGAGCCCAAATTTA GGTGAATTGGAATAATCCTAAAATtggtaaaaacataaaaattataaaaa ttttgggaaaatataTGCAAAAGctataaagaaagaaagaaaccaACACC AAAGAAGGCAGTTCTTTTAAGCCATATTTCTTAGTACCAATTTGCTCTTC TAAATTTCAGGTTTTGAATTATGGTAGAAATACAGTAAATTCATTACAAC TGGTTTAATGCATTGATGCAATTATCAGTTGGATTTTAAGGAAAGAATTT GCATTGATGCAATCTTCAGttggattttaagaaaaagattgCATCAATAC ATGAAACCAGTGGTATTGGCATAGAAAAATAATGTTTCTTTTAATGAAGT TATTTGTTCTGCAGTAGTATCGAGCACTCTAATTGTGAAGATACAATTTA CAAGCAGAAATACAGTATGTAATTGGAATACTTGAAAGACTTGCTTTTGC TTTTTGCAGGATCTTTCAATACCATTTGTCAAATTGATCAATACTACTGT TGAGNTGCTTTTGCTTTTTACAGGATCTTTCAATACCATTTGTCAAATTG ATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACGCGAGAATTGTTGA GCAATTATTCAACCTCATCATTAATAACAACATTTTGTTGAATGATCATC AAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTGGATGGAACTCATT GATGTTTATTTGAATAAGCAGCACATTGAAATGATGCATCAGCCACTTTT TATTGCCTTGATGATAAAAACAACGGCGACTGATCATAAGGTTACTTCAT CAATATgctctcaattttttttactcaGACTCTAGAAGTTTGCTACAAAC TTTTTTgtctaaattttttatttttgttgttgttgttttgtttttttttt gtaatagaAGCAGTCTTCTATGTAAATAAGTAGGATGGAAATGGTCTAAA TTTTTGTCTTAATGAATATtcaattaaaattaatttttctattCAAAAGC CtagaaataaaattttgtaatttcctggTTTAATTTATCAGCCTTATAGC AATAGCATGAAAATGTGTGTAACAATATTGTAACAGGTGCTTATGTAATG AGTTATTTTATTCTACTTTTACCTTAGCATGCAAGAAATTGCTGGCTCCT TGTTGGAAAGGAAGACTTTTTTGATCAGAAATCACTTCATTTTGCACACA ATGCTTTTTCAATTGTTCAGAACCTGGATTTCCATCTGGCTTATTCTGGC AATACAACCATTCAAATGTTAAGAAATGAATTGAAGATTTACTTGACAGC AACAAACTTCCATTTTTGTTATGAAGGAGACTTTACTTTGTGGGTATCTG ATATTG

Coding sequence (CDS) from alignment at sc0000039:554528..556083+

>TCONS_00004044 ID=TCONS_00004044|Name=TCONS_00004044|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at sc0000039:554528..556083+ (Clytia hemisphaerica)
CAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAATCTCC
ATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGTGATC
ATTTTGTCAATTCTATTCAACAATTCTGTCAAGATCTTTCAATACCATTT
GTCAAATTGATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACGCGAG
AATTGTTGAGCAATTATTCAACCTCATCATTAATAACAACATTTTGTTGA
ATGATCATCAAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTGGATG
GAACTCATTGATGTTTATTTGAATAAGCAGCACATTGAAATGATGCATCA
GCCACTTTTTATTGCCTTGATGATAAAAACAACGGCGACTGATCATAAGC
ATGCAAGAAATTGCTGGCTCCTTGTTGGAAAGGAAGACTTTTTTGATCAG
AAATCACTTCATTTTGCACACAATGCTTTTTCAATTGTTCAGAACCTGGA
TTTCCATCTGGCTTATTCTGGCAATACAACCATTCAAATGTTAAGAAATG
AATTGAAGATTTACTTGACAGCAACAAACTTCCATTTTTGTTATGAAGGA
GACTTTACTTTGTGGGTATCTGATATTCAAATGGATGTTATATCAATGCT
TACAAAATTGGAATTGAAAGAATCTCCATTGGAAAATGTTGTTACATTTG
GACGATTCATGAAGGCATTTGGTGATCATTTTGTCAATTCTATTCAACAA
TTCTGTCAAGATCTTTCAATACCATTTGTCAAATTGATCAATACTGCTGT
TGAGTATGTGCTTAAAGATCACGCGAGAATTGTTGAGCAATTATTCAACC
TCATCATTAATAACAACATTTTGTTGAATGATCATCAAATACAAAGTCGA
GTCGTAGGACTGGTACATTTTTGGATGGAACTCATTGATGTTTATTTGAA
TAAGCAGCACATTGAAATGATGCATCAGCCACTTTTTATTGCCTTGATGA
TAAAAACAACGGCGACTGATCATAAGCATGCAAGAAATTGCTGGCTCCTT
GTTGGAAAGGAAGACTTTTTTGATCAGAAATCACTTCATTTTGCACACAA
TGCTTTTTCAATTGTTCAGAACCTGGATTTCCATCTGGCTTATTCTGGCA
ATACAACCATTCAAATGTTAAGAAATGAATTGAAGATTTACTTGACAGCA
ACAAACTTCCATTTTTGTTATGAAGGAGACTTTACTTTGTGGGTATCTGA
TATTCAAATGGATGTTATATCAATGCTTACAAAATTGGAATTGAAAGAAT
CTCCATTGGAAAATGTTGTTACATTTGGACGATTCATGAAGGCATTTGGT
GATCATTTTGTCAATTCTATTCAACAATTCTGTCAAGATCTTTCAATACC
ATTTGTCAAATTGATCAATACTGCTGTTGAGTATGTGCTTAAAGATCACG
CGAGAATTGTTGAGCAATTATTCAACCTCATCATTAATAACAACATTTTG
TTGAATGATCATCAAATACAAAGTCGAGTCGTAGGACTGGTACATTTTTG
GATGGAACTCATTGATGTTTATTTGAATAAGCAGCACATTGAAATGATGC
ATCAGCCACTTTTTATTGCCTTGATGATAAAAACAACGGCGACTGATCAT
AAGCATGCAAGAAATTGCTGGCTCCTTGTTGGAAAGGAAGACTTTTTTGA
TCAGAAATCACTTCATTTTGCACACAATGCTTTTTCAATTGTTCAGAACC
TGGATTTCCATCTGGCTTATTCTGGCAATACAACCATTCAAATGTTAAGA
AATGAATTGAAGATTTACTTGACAGCAACAAACTTCCATTTTTGTTATGA
AGGAGACTTTACTTTGTGGGTATCTGATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002269XLOC_002269Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004044-proteinTCONS_00004044-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004044-exon-sc0000039-1491911889:554528..554659TCONS_00004044-exon-sc0000039-1491911889:554528..554659Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1510915933:554528..554659TCONS_00004044-exon-sc0000039-1510915933:554528..554659Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1575043694:554528..554659TCONS_00004044-exon-sc0000039-1575043694:554528..554659Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1491911889:555251..555517TCONS_00004044-exon-sc0000039-1491911889:555251..555517Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1510915933:555251..555517TCONS_00004044-exon-sc0000039-1510915933:555251..555517Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1575043694:555251..555517TCONS_00004044-exon-sc0000039-1575043694:555251..555517Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1491911889:555855..556083TCONS_00004044-exon-sc0000039-1491911889:555855..556083Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1510915933:555855..556083TCONS_00004044-exon-sc0000039-1510915933:555855..556083Clytia hemisphaericaexon
TCONS_00004044-exon-sc0000039-1575043694:555855..556083TCONS_00004044-exon-sc0000039-1575043694:555855..556083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:554528..556083 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.228371 tpm) - - (3.48877 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37083 1.73395 1.15045 1.5945 0.228371 0.451155 0.544299 0.611479 0.78487 0.883807 1.37255 0.789479 1.2952 1.75445 1.10584 2.27027 1.14414 0.586353 1.35013 1.88375 1.30986 1.19794 0.970837 1.23568 2.27273 3.48877 1.27713 0.991263 0.469899 0.766004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Sequence
Match NameE-valueIdentityDescription
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