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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97364_cuf1 >transcript:BL97364_cuf1-protein ID=transcript:BL97364_cuf1-protein|Name=transcript:BL97364_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=367bp
LLTAFTTIFAQPNEIRSIAIKATEVETEDDGKKTAEEGGVDQDLMEENKV
ENIRDKNDEVLPTDKAPQQPECPTGSYVPENSTICQLDCPPGFVPAPDGS
NCTCAPGLNLSPDGLTCRPTCAPGFIPSADELTCTCPAGFVSSPDETLCI
CEDVLLKTFDEHNCSCPNGFVLSENGTCSCPESVTFINGEFFCPENIKLS
NNTEDGCPEGLVHSLDGSNCTCPNNLFFKDEEDSCTCPEGLVLSQTNLGD
ICTCPKGMVLIENGRSCACQEGFVRTDDGLSCVCPGNLVLREDEDLLKCL
CPEGMLYTEDRLACTCEEGFVLTEDKTNCKCPGNQILHKDGEKDSCICPE
RMVFTEDQLNCTCTEGF Run BLAST on NCBI mRNA from alignment at Sc0000349:26323..30048- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97364_cuf1 ID=transcript:BL97364_cuf1|Name=transcript:BL97364_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3726bp|location=Sequence derived from alignment at Sc0000349:26323..30048- (Branchiostoma lanceolatum)
TGCTGCTGACTGCCTTCACCACTATCTTCGCCCAGCCAAACGAGATTCGC
TCCATCGCTATCAAAGCCACAGAAGTTGAGACTGAAGACGATGGAAAGAA
AACAGCAGAGGAAGGTGGTGTTGATCAGGTTAGGGCAGCTCAATATTACA
TTGAACATCACACTAATTTACTCACCCACTATCCTGTTTATTGCCTTTGC
TGTTGGCAGAAGGTTATGTTTTTGGTTAAAATTGTGATGTGACCGGGTGT
TGGCGATATATATCTTGATGCCATGGACAGATGTTGGTGATTTTTGGTAG
GTAAAGTTTCTGTTGGGGAGACGAAGGTCAAGATCGAAGATGGGTCTTCT
GGGGGGTTCCCTTTAGGGGTGGGTACCGGTACCGTGTACCGGTACAAAAC
CGGTATTTCTTAATGGACCGGTCCAAAAAAAAAACGGTCTGTAAAAAATC
AGTGGACCGGCCTATGGACCGATTAGAAAATTCATAGTACCAGGCTACCA
GCAGGCGGCCACATAACTGGTCTAAGAAAATACGAAACAGCAGAGTCGTT
TTCGAACACGTTAGTTGTGAATCGTATCTAGAAACAGTTAAAGGATGAGT
AAACAGACGGCGAGGAGAGTATAGTTATAATTTTGAGACAAAGTGCAAAC
CTAAGAAATTATATCGTTCCAGACATGACGTTTGGAGACTTTTACGTGTG
TTTCGCTCTCCAAAATATTATGTACTGCGACACTACTATAATCAGGTACA
GGTACAGGTCCGGACCTGGACCTGACCCTCTGGACCTGGACCTGGACCGG
ACCTGAATTTTATGTACCGGTACCCACCCCTAGTTCCCTTGGTTTGTGTT
TGTTTGTTTGTTTGTTGGTTTGTTGGCGGGATAATTCAAGAGGCATTTGA
TGGATCTTGATAAAATTTGGTGGGTTGGTGGGGGTCAGGACAACAAAGGT
CAAGTTCGATAATGAGCCTCCTAGCGGCTACTTCGTGCTGCAGAGGGACT
TCAAAGTTTTTGAGTTCAAGTTCTGGATGTGCTGTGGTCGTGATTTTGGA
GTGTCGAATAGGTCTTGTGGCTGGAAGGACGTTGTGGCCTCGCCTATCAG
CTTGTTATATCTAGTGTTGGTCTCCGTCTCACAAGGGTTAGAGGTGCTAG
CCCATACATATACATGTAGATGTCATCGCTTGATGGCAAAGCGCCTGGTG
CTCTATCCTTTGGGTTAACACTGTAGATTCAGTTCAATTATCTAATTCTT
AGACTTTTTGAAAACAAAGTTAAAGAATGTACTTAATTATTGTAACCTTG
TTTCAGGATCTAATGGAGGAAAACAAAGTGGAGAACATAAGAGATAAGAA
TGATGAAGTTCTTCCGACAGACAAGGCACCACAACAACCTGGTAAGAAAC
AACCGAGTTACTGACAAGATTCAGATGAATTGTCTGGAATTATTTTTTGT
TGTGTGTGAAAAGCGTTCTATAAGTTTTGTTTGTCAATTTTGTTGTGAAT
TTCATAAGTTTTCTTATGTTTTATAATACTGTAAATGCATATTTTAAGTT
CGGGTGGTTTTTATTTCGCGCTAAGGCGAGTGTTCGTGGTGGTTTTAAGT
TTGCGGCAGCACTATAGTCACATACTGGTACAGTATTGGACAAAAATGTT
TGCGGTGGTTTCAAGTTCATGGTGAAATGGTCGCTGCACAAACCGCATAA
AACCACTGCAAACATTTCTGCATAATACTGTATACTAGTATTTCAATGAA
TGAATATTTGTACCAGAAAAGGAAAATCAAGCATTTCTTTTCATAAACAC
CTGATGATTTCTTTTATTTTCAAGAGTGTCCAACAGGATCCTATGTACCT
GAGAACAGTACCATCTGTCAGCTGGACTGTCCACCTGGGTTTGTGCCTGC
ACCTGATGGTAGTAACTGCACCTGTGCACCTGGCCTGAACCTCTCACCTG
ACGGGCTCACCTGTAGGCCCACCTGTGCACCTGGATTCATTCCTTCAGGT
ATTAACAAACAATATTGTGTTGGTTGAATGGGCATAAAGGGGCAATGTCA
CATGCAGCCCTGTGGTGCAAGCAGTTATGCATCCCTGTCGCTTGGCCATA
TGGATCAAATTCTGTGGATCCGTGGGCAGGGGTTCAATCCCAGGGTCAGC
CCAGGAGCATCATGTTGTGAGGGATTGCATTCGTCATTTTGGATGGGGAT
GTAAAGCTGGTTGCCCCATGTGTAAGAGAGCTTCAGGAGTAAGCTCAAGA
GTAAAACCTCTGCATGTAAAAGAACCCAGTACACTTATCAAGATGAGTAG
GGGGACCCGGTGTGCTTGGCTAAATACACAAGCTGTGGCAAGGCCGCATT
GCACAAAAACATTTCTTGTAGCTCTGAGATTNAAAAACATTTTTTGTAGC
TCTGAGATTATACTCATGATTACTTCAGGGACGTTGGTCACATTTCATTT
ATTTTTCAAACAAACTTGCAGGGCCTTAACATTGCAGGTGGGAAACTGTT
ACTAGTAGTATTATGCCATATAGAAGACAGAACCTAAATAATATGTTTGG
GGTGTGATGAGTTAAAGCGTACAGTGAGAGGTCACTGTAAAAACCCTGAA
CATGAGACCCACACAAATATTTCATTAACAGTTCGACATTATATGATGCT
TCACTTTTCATACTTTTGTATTAATTTCTGAGATGTAAGACAATTTCAAA
ACAGGATACTTTTAGATACATGTACTTGATGTCATGCACAAATGTTTATG
TAACGGACAAAGTTTGTAAGTATGTCGTCATGTGTTTCAAAAAGAGAGAA
GTAGCCACTAGAACTTAGATATACGGTAGTTCATTGGTATAGTGTTTAGT
ATTGTATTAGACATTAACGTTTATCATTTTATTATCTCAATTACCCATGT
ATNATGTTATTATTATCATTTTATTATCTCAATTACCCATGTATGGCATC
CTGTGCATTTATCCTCCTGGGGAATGAACATGCAATAAAGATTATTATCA
TTCTTACAGCTGATGAGCTGACCTGCACCTGTCCAGCTGGTTTTGTCAGC
TCACCTGACGAGACCTTGTGCATCTGTGAGGACGTCTTACTAAAAACGTT
TGACGAACACAACTGCTCTTGTCCAAACGGCTTTGTCCTGTCAGAAAATG
GAACGTGTTCCTGTCCTGAATCTGTTACATTCATCAATGGAGAGTTTTTC
TGCCCTGAAAATATAAAACTTTCCAACAACACTGAAGATGGCTGTCCTGA
AGGATTGGTCCACTCCCTTGATGGCTCGAACTGCACTTGCCCAAACAACT
TATTCTTCAAGGACGAGGAAGACAGTTGTACATGTCCCGAAGGTCTTGTA
CTCTCACAGACAAATCTTGGAGACATCTGTACATGTCCGAAAGGTATGGT
GCTCATCGAGAATGGTAGAAGTTGTGCATGTCAGGAGGGATTTGTAAGAA
CAGACGATGGTTTGAGTTGTGTTTGCCCAGGGAACTTGGTACTTCGGGAG
GATGAAGATCTACTTAAGTGTTTGTGTCCAGAAGGAATGCTTTACACGGA
GGACAGGCTTGCTTGTACTTGTGAAGAAGGATTTGTGTTAACGGAAGACA
AGACAAATTGTAAGTGTCCAGGTAATCAAATTCTTCACAAGGATGGCGAG
AAAGATTCTTGTATCTGTCCAGAGAGAATGGTGTTCACAGAGGACCAGCT
CAACTGTACATGTACAGAAGGGTTTG Coding sequence (CDS) from alignment at Sc0000349:26323..30048- >transcript:BL97364_cuf1 ID=transcript:BL97364_cuf1|Name=transcript:BL97364_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4404bp|location=Sequence derived from alignment at Sc0000349:26323..30048- (Branchiostoma lanceolatum)
CTGCTGACTGCCTTCACCACTATCTTCGCCCAGCCAAACGAGATTCGCTC
CATCGCTATCAAAGCCACAGAAGTTGAGACTGAAGACGATGGAAAGAAAA
CAGCAGAGGAAGGTGGTGTTGATCAGGATCTAATGGAGGAAAACAAAGTG
GAGAACATAAGAGATAAGAATGATGAAGTTCTTCCGACAGACAAGGCACC
ACAACAACCTGAGTGTCCAACAGGATCCTATGTACCTGAGAACAGTACCA
TCTGTCAGCTGGACTGTCCACCTGGGTTTGTGCCTGCACCTGATGGTAGT
AACTGCACCTGTGCACCTGGCCTGAACCTCTCACCTGACGGGCTCACCTG
TAGGCCCACCTGTGCACCTGGATTCATTCCTTCAGCTGATGAGCTGACCT
GCACCTGTCCAGCTGGTTTTGTCAGCTCACCTGACGAGACCTTGTGCATC
TGTGAGGACGTCTTACTAAAAACGTTTGACGAACACAACTGCTCTTGTCC
AAACGGCTTTGTCCTGTCAGAAAATGGAACGTGTTCCTGTCCTGAATCTG
TTACATTCATCAATGGAGAGTTTTTCTGCCCTGAAAATATAAAACTTTCC
AACAACACTGAAGATGGCTGTCCTGAAGGATTGGTCCACTCCCTTGATGG
CTCGAACTGCACTTGCCCAAACAACTTATTCTTCAAGGACGAGGAAGACA
GTTGTACATGTCCCGAAGGTCTTGTACTCTCACAGACAAATCTTGGAGAC
ATCTGTACATGTCCGAAAGGTATGGTGCTCATCGAGAATGGTAGAAGTTG
TGCATGTCAGGAGGGATTTGTAAGAACAGACGATGGTTTGAGTTGTGTTT
GCCCAGGGAACTTGGTACTTCGGGAGGATGAAGATCTACTTAAGTGTTTG
TGTCCAGAAGGAATGCTTTACACGGAGGACAGGCTTGCTTGTACTTGTGA
AGAAGGATTTGTGTTAACGGAAGACAAGACAAATTGTAAGTGTCCAGGTA
ATCAAATTCTTCACAAGGATGGCGAGAAAGATTCTTGTATCTGTCCAGAG
AGAATGGTGTTCACAGAGGACCAGCTCAACTGTACATGTACAGAAGGGTT
TCTGCTGACTGCCTTCACCACTATCTTCGCCCAGCCAAACGAGATTCGCT
CCATCGCTATCAAAGCCACAGAAGTTGAGACTGAAGACGATGGAAAGAAA
ACAGCAGAGGAAGGTGGTGTTGATCAGGATCTAATGGAGGAAAACAAAGT
GGAGAACATAAGAGATAAGAATGATGAAGTTCTTCCGACAGACAAGGCAC
CACAACAACCTGAGTGTCCAACAGGATCCTATGTACCTGAGAACAGTACC
ATCTGTCAGCTGGACTGTCCACCTGGGTTTGTGCCTGCACCTGATGGTAG
TAACTGCACCTGTGCACCTGGCCTGAACCTCTCACCTGACGGGCTCACCT
GTAGGCCCACCTGTGCACCTGGATTCATTCCTTCAGCTGATGAGCTGACC
TGCACCTGTCCAGCTGGTTTTGTCAGCTCACCTGACGAGACCTTGTGCAT
CTGTGAGGACGTCTTACTAAAAACGTTTGACGAACACAACTGCTCTTGTC
CAAACGGCTTTGTCCTGTCAGAAAATGGAACGTGTTCCTGTCCTGAATCT
GTTACATTCATCAATGGAGAGTTTTTCTGCCCTGAAAATATAAAACTTTC
CAACAACACTGAAGATGGCTGTCCTGAAGGATTGGTCCACTCCCTTGATG
GCTCGAACTGCACTTGCCCAAACAACTTATTCTTCAAGGACGAGGAAGAC
AGTTGTACATGTCCCGAAGGTCTTGTACTCTCACAGACAAATCTTGGAGA
CATCTGTACATGTCCGAAAGGTATGGTGCTCATCGAGAATGGTAGAAGTT
GTGCATGTCAGGAGGGATTTGTAAGAACAGACGATGGTTTGAGTTGTGTT
TGCCCAGGGAACTTGGTACTTCGGGAGGATGAAGATCTACTTAAGTGTTT
GTGTCCAGAAGGAATGCTTTACACGGAGGACAGGCTTGCTTGTACTTGTG
AAGAAGGATTTGTGTTAACGGAAGACAAGACAAATTGTAAGTGTCCAGGT
AATCAAATTCTTCACAAGGATGGCGAGAAAGATTCTTGTATCTGTCCAGA
GAGAATGGTGTTCACAGAGGACCAGCTCAACTGTACATGTACAGAAGGGT
TTCTGCTGACTGCCTTCACCACTATCTTCGCCCAGCCAAACGAGATTCGC
TCCATCGCTATCAAAGCCACAGAAGTTGAGACTGAAGACGATGGAAAGAA
AACAGCAGAGGAAGGTGGTGTTGATCAGGATCTAATGGAGGAAAACAAAG
TGGAGAACATAAGAGATAAGAATGATGAAGTTCTTCCGACAGACAAGGCA
CCACAACAACCTGAGTGTCCAACAGGATCCTATGTACCTGAGAACAGTAC
CATCTGTCAGCTGGACTGTCCACCTGGGTTTGTGCCTGCACCTGATGGTA
GTAACTGCACCTGTGCACCTGGCCTGAACCTCTCACCTGACGGGCTCACC
TGTAGGCCCACCTGTGCACCTGGATTCATTCCTTCAGCTGATGAGCTGAC
CTGCACCTGTCCAGCTGGTTTTGTCAGCTCACCTGACGAGACCTTGTGCA
TCTGTGAGGACGTCTTACTAAAAACGTTTGACGAACACAACTGCTCTTGT
CCAAACGGCTTTGTCCTGTCAGAAAATGGAACGTGTTCCTGTCCTGAATC
TGTTACATTCATCAATGGAGAGTTTTTCTGCCCTGAAAATATAAAACTTT
CCAACAACACTGAAGATGGCTGTCCTGAAGGATTGGTCCACTCCCTTGAT
GGCTCGAACTGCACTTGCCCAAACAACTTATTCTTCAAGGACGAGGAAGA
CAGTTGTACATGTCCCGAAGGTCTTGTACTCTCACAGACAAATCTTGGAG
ACATCTGTACATGTCCGAAAGGTATGGTGCTCATCGAGAATGGTAGAAGT
TGTGCATGTCAGGAGGGATTTGTAAGAACAGACGATGGTTTGAGTTGTGT
TTGCCCAGGGAACTTGGTACTTCGGGAGGATGAAGATCTACTTAAGTGTT
TGTGTCCAGAAGGAATGCTTTACACGGAGGACAGGCTTGCTTGTACTTGT
GAAGAAGGATTTGTGTTAACGGAAGACAAGACAAATTGTAAGTGTCCAGG
TAATCAAATTCTTCACAAGGATGGCGAGAAAGATTCTTGTATCTGTCCAG
AGAGAATGGTGTTCACAGAGGACCAGCTCAACTGTACATGTACAGAAGGG
TTTCTGCTGACTGCCTTCACCACTATCTTCGCCCAGCCAAACGAGATTCG
CTCCATCGCTATCAAAGCCACAGAAGTTGAGACTGAAGACGATGGAAAGA
AAACAGCAGAGGAAGGTGGTGTTGATCAGGATCTAATGGAGGAAAACAAA
GTGGAGAACATAAGAGATAAGAATGATGAAGTTCTTCCGACAGACAAGGC
ACCACAACAACCTGAGTGTCCAACAGGATCCTATGTACCTGAGAACAGTA
CCATCTGTCAGCTGGACTGTCCACCTGGGTTTGTGCCTGCACCTGATGGT
AGTAACTGCACCTGTGCACCTGGCCTGAACCTCTCACCTGACGGGCTCAC
CTGTAGGCCCACCTGTGCACCTGGATTCATTCCTTCAGCTGATGAGCTGA
CCTGCACCTGTCCAGCTGGTTTTGTCAGCTCACCTGACGAGACCTTGTGC
ATCTGTGAGGACGTCTTACTAAAAACGTTTGACGAACACAACTGCTCTTG
TCCAAACGGCTTTGTCCTGTCAGAAAATGGAACGTGTTCCTGTCCTGAAT
CTGTTACATTCATCAATGGAGAGTTTTTCTGCCCTGAAAATATAAAACTT
TCCAACAACACTGAAGATGGCTGTCCTGAAGGATTGGTCCACTCCCTTGA
TGGCTCGAACTGCACTTGCCCAAACAACTTATTCTTCAAGGACGAGGAAG
ACAGTTGTACATGTCCCGAAGGTCTTGTACTCTCACAGACAAATCTTGGA
GACATCTGTACATGTCCGAAAGGTATGGTGCTCATCGAGAATGGTAGAAG
TTGTGCATGTCAGGAGGGATTTGTAAGAACAGACGATGGTTTGAGTTGTG
TTTGCCCAGGGAACTTGGTACTTCGGGAGGATGAAGATCTACTTAAGTGT
TTGTGTCCAGAAGGAATGCTTTACACGGAGGACAGGCTTGCTTGTACTTG
TGAAGAAGGATTTGTGTTAACGGAAGACAAGACAAATTGTAAGTGTCCAG
GTAATCAAATTCTTCACAAGGATGGCGAGAAAGATTCTTGTATCTGTCCA
GAGAGAATGGTGTTCACAGAGGACCAGCTCAACTGTACATGTACAGAAGG
GTTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000349 | genome | Sc0000349:26323..30048 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97364_cuf1 |
| Biotype | protein_coding |
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