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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96423_cuf8 >transcript:BL96423_cuf8-protein ID=transcript:BL96423_cuf8-protein|Name=transcript:BL96423_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=195bp
WKDELRHQISDAFKALAKEVEQELGNVFGNSHLGDTYDSVEVTGFSPGSI
KVDFMVRFHSPTPIASDTVLAVLSGRTNIGGLQIDGAVTSITDVTGDESK
AAWYDNPIYISVICVGAAVVVTAIVVLVICCARKRRHKTMPADNHWPFDN
VPMHNQWPSDNAQRLVQQNLLVPLEKVSREPARQTYENPMYNDNE Run BLAST on NCBI mRNA from alignment at Sc0000343:101779..107553+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96423_cuf8 ID=transcript:BL96423_cuf8|Name=transcript:BL96423_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=5775bp|location=Sequence derived from alignment at Sc0000343:101779..107553+ (Branchiostoma lanceolatum)
AGTGGAAGGATGAACTCCGACATCAAATATCTGATGCCTTCAAGGCTTTG
GCTAAGGAAGTCGAGCAAGAGGTCAGTAAAAAAACCTCCATTGTGATTAG
GTAGATATTGGGAGGAGAAAGGTCAAGGTTGATTTTGGGCCCCCTGGTTT
GTGTCACTGGAACTGCAATGGCGTATTTGTCAAAATCTCCGAAGGAGAAT
AACTGAAGAAAGGAGGAAAAGATTTTCATGTTATTTGATATGCAGGTAGC
TTAGACAAAGATGTACACAATGAGGAGAAAATTATGCAAATTGGGACTGA
AGTTGCATAAGTAATGAGGATTATCTACATTTATATTCAAGGCATGTTGT
GACAGGTGTCACCTGTTGGTTTCGAAACTGGTTCAAATATTCCCCAGGGA
CCCGACAGCTGGTTAAACCACAGAGGGATATACAACCAAGCCTGTATACT
TGTTTCTAGTATGTGGATAGCTTAAGTGTAACTTGATATAATGAAATGGT
GATAATGCAAATCAGAATCTAATTTGCATATTGATTAATGGGGGCACTTT
TTTAAACCCACTCCGTTCAATGGTACGACAGTTAAAAAATACAACATATG
TGACCGAGTAATAAAGGGACATTGATAGATATAATTTATGCAAATGAAGA
CCTAATTTGCACAATTAATGAGAAAATACTGTAATTCCATATAGGTAGAT
AACTGGAATTTCATACTCGTGGCATTTGGAAGTTATGTGACAGTGAACAT
AGTTGAATATAGATTATGCAAATGTTGGCCTAATTTGCATAATATATATT
TTATAGAGATTCGAGGTCTCCGAACTCTTGTTTGTCTTGCTCTGTGTTTC
TTTGGTTTCTTTTCCCATTAAAGGTAAATCAAAATGTTGCATGGTTTCTT
GTACTTTTTTTCCCTTATAGCTGGGGAATGTGTTCGGCAACAGCCACCTT
GGAGATACATACGACTCTGTCGAGGTTACCGGCTTTTCGTAAGTTATCCT
CTTAGCTTTACCTCTTTGTAGGTAATACATTACACATACGGGTATGCATT
GTCTTGTATAATGATCCAGTCCATTCTGACCGTTTGAAAGAGCATACTCC
TTTACCAAAAACCAACTTTTACCCAGACGACATAGCCGTTTGATTTGCTT
TTGACGTTGCTCGTGGTTATCTCTTTCTCTTAATCACAAAAGTGTTATTG
TCAACTTGCATTTTATGTATCCGCGTTAGTTACTGTGTCAATCTTATTAA
CTAACCCTTGGCGTCTACTACTTTATTACGTACATGAATGTCAATTGGTT
ATGTTTCAGTCCCGGAAGCATTAAAGTAGATTTCATGGTGCGTTTCCACT
CACCCACACCCGTTGCCAGTGATACCGTCTTGGCTGTGTTGTCAGGACGA
ACAAACATTGGTGGTTTACAGATAGATGACGCTTTTAGTAGCATCACAGG
TACGTTCACGTGTCTAAACAGTTTGACAATGATGTACATTATAGACAATT
TCCAAGATTAAACCACGGTTTTGAAATGCTCAAAGTATGAAGTTAGTACA
CAAATGTGCTACAGTGTTAGTACATGTCACTACCATAAAGATTATAGCAT
TCTTTCATTTCCACTTTTTGGGCACTAATATTGCTTTCGTTGCCTTTAAC
CTGAAATGTTCCGTACACATCCTGCCATCCTAGGCACTTCTATAGTAGTG
GAGGCACATTTNTTTGCATAATATATATTTTATAGAGATTCGAGGTCTCC
GAACTCTTGTTTGTCTTGCTCTGTGTTTCTTTGGTTTCTTTTCCCATTAA
AGGTAAATCAAAATGTTGCATGGTTTCTTGTACTTTTTTTCCCTTATAGC
TGGGGAATGTGTTCGGCAACAGCCACCTTGGAGATACATACGACTCTGTC
GAGGTTACCGGCTTTTCGTAAGTTATCCTCTTAGCTTTACCTCTTTGTAG
GTAATACATTACACATACGGGTATGCATTGTCTTGTATAATGATCCAGTC
CATTCTGACCGTTTGAAAGAGCATACTCCTTTACCAAAAACCAACTTTTA
CCCAGACGACATAGCCGTTTGATTTGCTTTTGACGTTGCTCGTGGTTATC
TCTTTCTCTTAATCACAAAAGTGTTATTGTCAACTTGCATTTTATGTATC
CGCGTTAGTTACTGTGTCAATCTTATTAACTAACCCTTGGCGTCTACTAC
TTTATTACGTACATGAATGTCAATTGGTTATGTTTCAGTCCCGGAAGCAT
TAAAGTAGATTTCATGGTGCGTTTCCACTCACCCACACCCGTTGCCAGTG
ATACCGTCTTGGCTGTGTTGTCAGGACGAACAAACATTGGTGGTTTACAG
ATAGATGACGCTTTTAGTAGCATCACAGGTACGTTCACGTGTCTAAACAG
TTTGACAATGATGTACATTATAGACAATTTCCAAGATTAAACCACGGTTT
TGAAATGCTCAAAGTATGAAGTTAGTACACAAATGTGCTACAGTGTTAGT
ACATGTCACTACCATAAAGATTATAGCATTCTTTCATTTCCACTTTTTGG
GCACTAATATTGCTTTCGTTGCCTTTAACCTGAAATGTTCCGTACACATC
CTGCCATCCTAGGCACTTCTATAGTAGTGGAGGCACATTTGTTCAGAGGC
GTCCTGAAGTTGGTGAATCGTGAGTGGAAGGATGAACTCCGACATCAAAT
ATCTGATGCCTTCAAGGCTTTGGCTGCGGAAGTCGAGCAAGAGGTCGGTA
CAGAATGAAACTATCAAAATCCTCCATTGTGGTTTATCTTGCACTGTGTA
TTTGGTTTTGTTTCCCATTAAAGCTAAAATCTGGGTTCTTCGTTCTTTTC
CATATAGCTGGGGAATGTGTTCGGCAACAGCGACCTTGGAGATACGTACG
ATTCTGTCGAGGTTACCGGCTTTTCGTAAGTTATCTTTTACTTCAACTCT
CAGCTTTACCTTTACCTTACCCTTAGCCGTTTGATTTGCTTTTGACGTTG
CTCGTGATTGCTCTTGCCTTGTAAAACTCAAAAGTGTTCTTGTCAACTTG
AATTACATGCATCTGTGTTACTGCGTCAATCTTGTTCACTAACCATTGAC
GTCTACTACTTTATTACGTACATGAATGTCAATTGGATATGTTTCAGTCC
CGGAAGCATCAAAGTGGATTTCATGGTGCGTTTCCACTCACCCACACCCA
TTGCCAGTGATACCGTCTTGGCTGTGCTGTCAGGACGAACAAACATTGGT
GGATTACAGATAGATGGCGCTGTTACCAGCATCACAGGTACGTTCACGTG
TCTGGTCAGTTTGACAATGATGTACTGTACATGATAGATAATTTCCAAGA
TTAAACCACTCAACTACTTTAAGAAGCATCCGTAGAAGCATCCTCATTAG
TCAGTTTTAACTAATGCATGCAGTTAGATATGTGAAGGTTAGACGTGACA
GGTCGTTCGGTGTAAGATAACCAGCTGCTGTCGCAACGCGTGCCTGCGAA
GCTGGTGTGTTACTGTTACGGTTATACCGGCTATATAGATACAGTTCCAG
AAGATAACCTAATGTGTCTTTGGTCTTATTTCCAGATGTGACTGGTGACG
AGAGCAAAGCTGGTGAGTACATTTGTCACATGTTTCTTTGTCAATTGACC
ATGAACGACAGAAATACCCATCTAATCAAAAGTATATTTCAATAAGAATA
CTTGTGGCAATATATACGTGAACCTGGCATTGACTGACAACAAAAGTTAT
CGCCAAGCTAGCTAGAAGGTGCAGTTTCAGTTGGTCATAAGACTTTGAGC
GCATTGTTTTCATAATCATATACAGTATAAACCATCCAATGCACTCTTTA
TCAACGCTCTTAGTTTTAAATAATATTATACAGGTCGCAGATGTCACAAT
TATAGCTAGTTAAATATAACATAACACTGCCAACAGAGGTCGGCTAAGTT
TGGTTACACTTGTTCTACTATAGTCAGCAGCATACGAAGAAAGCACACAA
TGCATTCAGATTACAATGTGGACGCAATTAAGATTATACCTCTAAATATG
AATGCTTGTTTCTTCCAGCATGGTACGACAACCCGATTTACATCTCAGTC
ATCTGTGTTGGCGCTGCAGTCGTCGTCACAGCAATTGTGGTACTGGTGAT
TTGCTGCGCTAGAAAGGTAAGGAAAAAGCTGTAAAATCTGGAAGCGAAGG
ACTTGCAGATACACAATGAATTTGCCATTAGTACTTACGAGCATGCAAGA
GTAGAACGAGCACAATGAGTTTAAATACATATAAAACTCGTTCCTAGCAT
CACACATTCCTGCAAGGTCTTTAATTGGCATGTCATGTCATGAGAAATGT
ATTACAGATGTACAGGCAACCTGTTGATAACATTTTAACAAATGATCCCA
CTTTTCTGGCATTGGCAGCGTCGTCACAAGACTATGCCTGCTGACAACCA
TTGGCCTTTCGACAATGTACCCATGCACAATCAGTGGCCTTCCGACAATG
CACAGCGCCTGGTTCAACAGAATCTGCTGGTTCCATTGGAGAAGGTCTCG
CGAGAACCCGCGAGACAGACGTACGAGAACCCAATGTACAACGACAATGA
ATGATAAGAAACATGTAATAAATGTTGGACCAGCGTTCCAAGTAATATGG
GAACGTTGTATTTCTTTCAGACTGTGACCAGTTTGCAACCATAAGTGATG
ATACAGTGTACTTGAAGAATGGTTACAGTGACCGCTATTAGTTGACAAAT
ATGACGTGCTTATGTACATCTGCTGATGTTTTTTTAGTGAGTTGCAGTTT
TAGTTTGACAAGTTGTGGAATGTTTGTTTTATTGAGGATGCAGTTCGATT
TTCTGCAAGTTGAGTTTCGGTTTACTATTTTCGTGTTGAAGTTCCCAGTT
TACGAGATATTTCAAACCATGACACATGCATGCGGTGAAGGGAGGTGGGA
TGAGTACTATGATCTACCCCAAAGTCATGGTCAAGCAAGAGAGAAATTGT
TTGTTTTCACTGCTTTGTATCTATGGTGACGTAACTTGTTTAAAAAGGTA
ATTTTCAAAATTAACTGAACAAGTGAAAATGGTTTATTATCCTTAAAGTT
GTTGTTTTAGTAAGTTTGAGAAGTTGTGGAATTTGTGTTTTATGAAAGAC
GCAGTACGTTTTTATGTACGATGAATTTTGGTTAACTACAGTGAGTAGTA
CATTCCTTTTATATTAGTCTTACGAGCAACTTCAAAACGTGACACATACA
TATAGTAAAAAAAACACTGAATGTTATGTAACTGTATTGCGTCAATGATG
AGAATGTTTGTTATCTGTCGAGTAGCTATTTCAGTAAGTTTGAGAAGTTG
TGAAATGTGCGTTTTATTGGAGATGCAGTACTTCATGTACGTTGGATTTT
GGTTTACAACTGCCGTGTTGAATTCATACTTGTACGAATGATTTCCATAA
AAAAGAACTGTTTCATAATAATCTGGACAATATAGAATGTTTCTTATTCG
TAATAGTTGGTCTCGAGCTCTACCGGTAACACTCGCAATATGAAATTTGC
CTAGGTTTCAAGTATATTGTTCATACTTAAAAAACACTTTGCTAGCTGGT
GGGTTACGCCTAATGGCGGTTAACGTTATACCGGCTATATAGATACAGAT
ATCATTCCTATCCCAAATGAACAATATTGGCTATTGATAGCGGGCGCCTT
GTGCATGTACAGTCTGTAGTAAGGGATGAATCCAGCTACGCATAAAGGTG
TTAATGAACTTGATGATAATGCAAC Coding sequence (CDS) from alignment at Sc0000343:101779..107553+ >transcript:BL96423_cuf8 ID=transcript:BL96423_cuf8|Name=transcript:BL96423_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=3528bp|location=Sequence derived from alignment at Sc0000343:101779..107553+ (Branchiostoma lanceolatum)
TGGAAGGATGAACTCCGACATCAAATATCTGATGCCTTCAAGGCTTTGGC
TAAGGAAGTCGAGCAAGAGCTGGGGAATGTGTTCGGCAACAGCCACCTTG
GAGATACATACGACTCTGTCGAGGTTACCGGCTTTTCTCCCGGAAGCATC
AAAGTGGATTTCATGGTGCGTTTCCACTCACCCACACCCATTGCCAGTGA
TACCGTCTTGGCTGTGCTGTCAGGACGAACAAACATTGGTGGATTACAGA
TAGATGGCGCTGTTACCAGCATCACAGATGTGACTGGTGACGAGAGCAAA
GCTGCATGGTACGACAACCCGATTTACATCTCAGTCATCTGTGTTGGCGC
TGCAGTCGTCGTCACAGCAATTGTGGTACTGGTGATTTGCTGCGCTAGAA
AGCGTCGTCACAAGACTATGCCTGCTGACAACCATTGGCCTTTCGACAAT
GTACCCATGCACAATCAGTGGCCTTCCGACAATGCACAGCGCCTGGTTCA
ACAGAATCTGCTGGTTCCATTGGAGAAGGTCTCGCGAGAACCCGCGAGAC
AGACGTACGAGAACCCAATGTACAACGACAATGAATGATGGAAGGATGAA
CTCCGACATCAAATATCTGATGCCTTCAAGGCTTTGGCTAAGGAAGTCGA
GCAAGAGCTGGGGAATGTGTTCGGCAACAGCCACCTTGGAGATACATACG
ACTCTGTCGAGGTTACCGGCTTTTCTCCCGGAAGCATCAAAGTGGATTTC
ATGGTGCGTTTCCACTCACCCACACCCATTGCCAGTGATACCGTCTTGGC
TGTGCTGTCAGGACGAACAAACATTGGTGGATTACAGATAGATGGCGCTG
TTACCAGCATCACAGATGTGACTGGTGACGAGAGCAAAGCTGCATGGTAC
GACAACCCGATTTACATCTCAGTCATCTGTGTTGGCGCTGCAGTCGTCGT
CACAGCAATTGTGGTACTGGTGATTTGCTGCGCTAGAAAGCGTCGTCACA
AGACTATGCCTGCTGACAACCATTGGCCTTTCGACAATGTACCCATGCAC
AATCAGTGGCCTTCCGACAATGCACAGCGCCTGGTTCAACAGAATCTGCT
GGTTCCATTGGAGAAGGTCTCGCGAGAACCCGCGAGACAGACGTACGAGA
ACCCAATGTACAACGACAATGAATGATGGAAGGATGAACTCCGACATCAA
ATATCTGATGCCTTCAAGGCTTTGGCTAAGGAAGTCGAGCAAGAGCTGGG
GAATGTGTTCGGCAACAGCCACCTTGGAGATACATACGACTCTGTCGAGG
TTACCGGCTTTTCTCCCGGAAGCATCAAAGTGGATTTCATGGTGCGTTTC
CACTCACCCACACCCATTGCCAGTGATACCGTCTTGGCTGTGCTGTCAGG
ACGAACAAACATTGGTGGATTACAGATAGATGGCGCTGTTACCAGCATCA
CAGATGTGACTGGTGACGAGAGCAAAGCTGCATGGTACGACAACCCGATT
TACATCTCAGTCATCTGTGTTGGCGCTGCAGTCGTCGTCACAGCAATTGT
GGTACTGGTGATTTGCTGCGCTAGAAAGCGTCGTCACAAGACTATGCCTG
CTGACAACCATTGGCCTTTCGACAATGTACCCATGCACAATCAGTGGCCT
TCCGACAATGCACAGCGCCTGGTTCAACAGAATCTGCTGGTTCCATTGGA
GAAGGTCTCGCGAGAACCCGCGAGACAGACGTACGAGAACCCAATGTACA
ACGACAATGAATGATGGAAGGATGAACTCCGACATCAAATATCTGATGCC
TTCAAGGCTTTGGCTAAGGAAGTCGAGCAAGAGCTGGGGAATGTGTTCGG
CAACAGCCACCTTGGAGATACATACGACTCTGTCGAGGTTACCGGCTTTT
CTCCCGGAAGCATCAAAGTGGATTTCATGGTGCGTTTCCACTCACCCACA
CCCATTGCCAGTGATACCGTCTTGGCTGTGCTGTCAGGACGAACAAACAT
TGGTGGATTACAGATAGATGGCGCTGTTACCAGCATCACAGATGTGACTG
GTGACGAGAGCAAAGCTGCATGGTACGACAACCCGATTTACATCTCAGTC
ATCTGTGTTGGCGCTGCAGTCGTCGTCACAGCAATTGTGGTACTGGTGAT
TTGCTGCGCTAGAAAGCGTCGTCACAAGACTATGCCTGCTGACAACCATT
GGCCTTTCGACAATGTACCCATGCACAATCAGTGGCCTTCCGACAATGCA
CAGCGCCTGGTTCAACAGAATCTGCTGGTTCCATTGGAGAAGGTCTCGCG
AGAACCCGCGAGACAGACGTACGAGAACCCAATGTACAACGACAATGAAT
GATGGAAGGATGAACTCCGACATCAAATATCTGATGCCTTCAAGGCTTTG
GCTAAGGAAGTCGAGCAAGAGCTGGGGAATGTGTTCGGCAACAGCCACCT
TGGAGATACATACGACTCTGTCGAGGTTACCGGCTTTTCTCCCGGAAGCA
TCAAAGTGGATTTCATGGTGCGTTTCCACTCACCCACACCCATTGCCAGT
GATACCGTCTTGGCTGTGCTGTCAGGACGAACAAACATTGGTGGATTACA
GATAGATGGCGCTGTTACCAGCATCACAGATGTGACTGGTGACGAGAGCA
AAGCTGCATGGTACGACAACCCGATTTACATCTCAGTCATCTGTGTTGGC
GCTGCAGTCGTCGTCACAGCAATTGTGGTACTGGTGATTTGCTGCGCTAG
AAAGCGTCGTCACAAGACTATGCCTGCTGACAACCATTGGCCTTTCGACA
ATGTACCCATGCACAATCAGTGGCCTTCCGACAATGCACAGCGCCTGGTT
CAACAGAATCTGCTGGTTCCATTGGAGAAGGTCTCGCGAGAACCCGCGAG
ACAGACGTACGAGAACCCAATGTACAACGACAATGAATGATGGAAGGATG
AACTCCGACATCAAATATCTGATGCCTTCAAGGCTTTGGCTAAGGAAGTC
GAGCAAGAGCTGGGGAATGTGTTCGGCAACAGCCACCTTGGAGATACATA
CGACTCTGTCGAGGTTACCGGCTTTTCTCCCGGAAGCATCAAAGTGGATT
TCATGGTGCGTTTCCACTCACCCACACCCATTGCCAGTGATACCGTCTTG
GCTGTGCTGTCAGGACGAACAAACATTGGTGGATTACAGATAGATGGCGC
TGTTACCAGCATCACAGATGTGACTGGTGACGAGAGCAAAGCTGCATGGT
ACGACAACCCGATTTACATCTCAGTCATCTGTGTTGGCGCTGCAGTCGTC
GTCACAGCAATTGTGGTACTGGTGATTTGCTGCGCTAGAAAGCGTCGTCA
CAAGACTATGCCTGCTGACAACCATTGGCCTTTCGACAATGTACCCATGC
ACAATCAGTGGCCTTCCGACAATGCACAGCGCCTGGTTCAACAGAATCTG
CTGGTTCCATTGGAGAAGGTCTCGCGAGAACCCGCGAGACAGACGTACGA
GAACCCAATGTACAACGACAATGAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000343 | genome | Sc0000343:101779..107553 + |
Properties
| Property Name | Value |
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| Transcript id | BL96423_cuf8 |
| Biotype | protein_coding |
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