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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004130 ID=TCONS_00004130|Name=TCONS_00004130|organism=Clytia hemisphaerica|type=transcript|length=2224bp
agatagtgtcgcgaaatgaaagatagtgtcgcgaaatgaaagatagtatt
tatttccgctttggcgcgccatagtaAATTCTCATTAAAAATTATAAGCT
AATGTTTTCTTGGTAGAAGAGAATAATCTTCACTTACTTCTTGCTGAAAT
GCaggtttaaaaaaaacttaaaacacccccttctcacatacCCACTCCAC
TGGGACCCCCTTgctactggaaaaattggccaaaatatcgttcctATCTG
AAagtttttctccaatttttgtccctgcTGAAAATAACCAGATAAGAAAA
TCCTCACTGCATAATATTGTGCTATTTCGTCCTTCCCCTCTGAATTTTCT
tgctcaaaaacaatggaattctcCAGCCATATAAAACATGGGAGTATCAA
TAACCATCGAGCTTTGGTCCgttctttttaacaaaaatccTACCGAGTCT
GTGCAGGGTTTGTGAGAATGGGGTATCTAAAATTACCAAATTGTTTGCAA
TGTGTTGACATACATACTTTAATAGGATAGattttcgcgggtggcactat
tgggagacaatattttcacgagTTCGTtgcttttactgtcaaatcatcac
atcatgcatgttggttgtttaAAGACGCGCTATTagcacttctttgatgc
cagtaaacattgaAAAAGTAGTTTATTTGACAGGATATTTGTTTGAAAAC
ATTCCAttgagacttaatttcgcggatgaaaCCCAAATCCGCGTATCAAA
AGTATTTGTGGACgctttacttttttttacttaGTACTAAAGTAAGTTAC
AATCTTTTAGATTCTTCACCTCTAAAATATCTTTGCAACGATGCATAGCT
TACTATTAAAGCATTCTGAGAAATTGTTAAGAAAGTAAAGTTTCCACATA
CTTCTAAGACAAACTTTAATTGTTGAAGTCTGCTTGAGAAATGGTAGAAG
ACAATATGTGACAAAAATCGTCCTTTACTTCCATGTTTTCTAGATAAGCG
AtaataaaaaacagtttttcttttaattcaCTTCGAAATCCTCTAAGACG
GCAATGATAGGTCTTCTTCGAGTGGTTGTCGTAGGTGTTGATTCCGTGGC
TTGCTCGGGTTCTTCCGTAGTTACCTCGGGTTCTTCCGTTGTGACTTCGG
GTTTTTCCGTGGTTACTTCGGGTTGTTCTGTGGCTACTTCGGGTTGTTCT
GTGGTGGCCTCGGGTTGTTCTGTGGTGGCCTCAGGTTGTTCTGTGGTTAC
TTCGGGTTCTCCCGTTGTTACTTCGGGTTCTTCCGTGGTTACTTCGGGTT
CTGTGGTTACTTTGGGTTCTTCTGTAGTTGTTGTGGTCgtagtggttgtt
gttgtaGGCGTTGTTGGAAGAAGACAGTCTGGTTTTGTTCCACACACTTG
TAGACATTCTACATCCCCAAAAGCGATGTAAACTAATTTGCCAGGTGGCG
AGTAGTGAAATTTGACAGAAAGTCGAGATACTCCAGCAACCATTCCTTGT
TGTGATTGAAAgtggaaaatattttgacattGTGGTTTTTCATAGAGTCT
GTTGATCCCTTGCCATGCGTGAAAGTCTGGGACAGCTGTTTCAAAACcaa
actaaaaattaaaagtgaaaataagGATTTTGGTTTCGTTTGAAACTATT
GATGTTATATCAATGCTGGCGAGGTTTTAGTTGATTTTTTACACTAACTT
ACCGTCAATTTTGCACCAAAGCGAAAATCATTTCCGCTTGTGAACCAAAT
TCCACTTTGAATCTTTCCTTGCTCAATAGTCCTTTCTCGAAGCATTCTTT
CACATTTTGCTGCACCAAAGTCACTTGATTTACATTGTTTTCCTTCAAAG
TTGCAGTCGATCCCTGTTGCTTCGATTGATGAAAGTTTAGTGTTGTAACC
CTTGACGTGAACTTCAATTCTTCTTTGTGAGAAGCCACCtgttattttga
aagttttcccTCCATCTATAATACTCTTTGCGTTCGGTGTTTTACTATGC
GAAGCATCAACATTCTGTACAACGTCAACGAACTTGATCGTTAAATCTGT
TGAACGAAATCCATCTCCcaaatttaaaatgaattttgaattgtATTGAC
CGTTAACTGATCGAGTGAGTGCGTCACATTTTGATTCGATTTTGTTGACG
AAAACCACCAAAAGAACAAAAACGTGTACGAAGTTCATTTCAATCCAATT
ATGTCTCTTCTGCTCGAAGTAAAC Run BLAST on NCBI transcript from alignment at sc0000039:461188..463642- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004130 ID=TCONS_00004130|Name=TCONS_00004130|organism=Clytia hemisphaerica|type=transcript|length=2455bp|location=Sequence derived from alignment at sc0000039:461188..463642- (Clytia hemisphaerica)
AGATAGTGTCGCGAAATGAAAGATAGTGTCGCGAAATGAAAGATAGTATT
TATTTCCGCTTTGGCGCGCCATAGTAAATTCTCATTAAAAATTATAAGCT
AATGTTTTCTTGGTAGAAGAGAATAATCTTCACTTACTTCTTGCTGAAAT
GCAGGTTTAAAAAAAACTTAAAACACCCCCTTCTCACATACCCACTCCAC
TGGGACCCCCTTGCTACTGGAAAAATTGGCCAAAATATCGTTCCTATCTG
AAAGTTTTTCTCCAATTTTTGTCCCTGCTGAAAATAACCAGATAAGAAAA
TCCTCACTGCATAATATTGTGCTATTTCGTCCTTCCCCTCTGAATTTTCT
TGCTCAAAAACAATGGAATTCTCCAGCCATATAAAACATGGGAGTATCAA
TAACCATCGAGCTTTGGTCCGTTCTTTTTAACAAAAATCCTACCGAGTCT
GTGCAGGGTTTGTGAGAATGGGGTATCTAAAATTACCAAATTGTTTGCAA
TGTGTTGACATACATACTTTAATAGGATAGATTTTCGCGGGTGGCACTAT
TGGGAGACAATATTTTCACGAGTTCGTTGCTTTTACTGTCAAATCATCAC
ATCATGCATGTTGGTTGTTTAAAGACGCGCTATTAGCACTTCTTTGATGC
CAGTAAACATTGAAAAAGTAGTTTATTTGACAGGATATTTGTTTGAAAAC
ATTCCATTGAGACTTAATTTCGCGGATGAAACCCAAATCCGCGTATCAAA
AGTATTTGTGGACGCTTTACTTTTTTTTACTTAGTACTAAAGTAAGTTAC
AATCTTTTAGATTCTTCACCTCTAAAATATCTTTGCAACGATGCATAGCT
TACTATTAAAGCATTCTGAGAAATTGTTAAGAAAGTAAAGTTTCCACATA
CTTCTAAGACAAACTTTAATTGTTGAAGTCTGCTTGAGAAATGGTAGAAG
ACAATATGTGACAAAAATCGTCCTTTACTTCCATGTTTTCTAGATAAGCG
ATAATAAAAAACAGTTTTTCTTTTAATTCACTTCGAAATCCTCTAAGACG
GCAATGATAGGTCTTCTTCGAGTGGTTGTCGTAGGTGTTGATTCCGTGGC
TTGCTCGGGTTCTTCCGTAGTTACCTCGGGTTCTTCCGTTGTGACTTCGG
GTTTTTCCGTGGTTACTTCGGGTTGTTCTGTGGCTACTTCGGGTTGTTCT
GTGGTGGCCTCGGGTTGTTCTGTGGTGGCCTCAGGTTGTTCTGTGGTTAC
TTCGGGTTCTCCCGTTGTTACTTCGGGTTGTTCCGTTGTTACTTCGGGTT
GTTCCGTGGTTACTTCGGGTTCTTCCGTGGTGACTTCGGGTTGTTCCGTT
GTTACTTCGGGTTGTTCCGTTGTTACTTCGGGTTGTTCCGTGATCACTTC
GGGTTGTTCTGTGGCTACTTCGGGTTGTTCTGTGGTGGCCTCGGGTTGTT
CTGTGGTGGCCTCAGGTTGTTCTGTGGTTACTTCAGGTTCTCCCGTTGTT
ACTTCGGGTTCTTCCGTGGTTACTTCGGGTTCTGTGGTTACTTTGGGTTC
TTCTGTAGTTGTTGTGGTCGTAGTGGTTGTTGTTGTAGGCGTTGTTGGAA
GAAGACAGTCTGGTTTTGTTCCACACACTTGTAGACATTCTACATCCCCA
AAAGCGATGTAAACTAATTTGCCAGGTGGCGAGTAGTGAAATTTGACAGA
AAGTCGAGATACTCCAGCAACCATTCCTTGTTGTGATTGAAAGTGGAAAA
TATTTTGACATTGTGGTTTTTCATAGAGTCTGTTGATCCCTTGCCATGCG
TGAAAGTCTGGGACAGCTGTTTCAAAACCAAACTAAAAATTAAAAGTGAA
AATAAGGATTTTGGTTTCGTTTGAAACTATTGATGTTATATCAATGCTGG
CGAGGTTTTAGTTGATTTTTTACACTAACTTACCGTCAATTTTGCACCAA
AGCGAAAATCATTTCCGCTTGTGAACCAAATTCCACTTTGAATCTTTCCT
TGCTCAATAGTCCTTTCTCGAAGCATTCTTTCACATTTTGCTGCACCAAA
GTCACTTGATTTACATTGTTTTCCTTCAAAGTTGCAGTCGATCCCTGTTG
CTTCGATTGATGAAAGTTTAGTGTTGTAACCCTTGACGTGAACTTCAATT
CTTCTTTGTGAGAAGCCACCTGTTATTTTGAAAGTTTTCCCTCCATCTAT
AATACTCTTTGCGTTCGGTGTTTTACTATGCGAAGCATCAACATTCTGTA
CAACGTCAACGAACTTGATCGTTAAATCTGTTGAACGAAATCCATCTCCC
AAATTTAAAATGAATTTTGAATTGTATTGACCGTTAACTGATCGAGTGAG
TGCGTCACATTTTGATTCGATTTTGTTGACGAAAACCACCAAAAGAACAA
AAACGTGTACGAAGTTCATTTCAATCCAATTATGTCTCTTCTGCTCGAAG
TAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004130-exon-sc0000039-1575043694:462388..463642 | TCONS_00004130-exon-sc0000039-1575043694:462388..463642 | Clytia hemisphaerica | exon |
| TCONS_00004130-exon-sc0000039-1575043694:461188..462156 | TCONS_00004130-exon-sc0000039-1575043694:461188..462156 | Clytia hemisphaerica | exon |
| TCONS_00004130-exon-sc0000039-1510915933:462388..463642 | TCONS_00004130-exon-sc0000039-1510915933:462388..463642 | Clytia hemisphaerica | exon |
| TCONS_00004130-exon-sc0000039-1510915933:461188..462156 | TCONS_00004130-exon-sc0000039-1510915933:461188..462156 | Clytia hemisphaerica | exon |
| TCONS_00004130-exon-sc0000039-1491911889:462388..463642 | TCONS_00004130-exon-sc0000039-1491911889:462388..463642 | Clytia hemisphaerica | exon |
| TCONS_00004130-exon-sc0000039-1491911889:461188..462156 | TCONS_00004130-exon-sc0000039-1491911889:461188..462156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:461188..463642 - |
Blast
The following BLAST results are available for this feature:
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