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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004129 ID=TCONS_00004129|Name=TCONS_00004129|organism=Clytia hemisphaerica|type=transcript|length=1352bp
AAAGTAAGTTACAATCTTTTAGATTCTTCACCTCTAAAATATCTTTGCAA
CGATGCATAGCTTACTATTAAAGCATTCTGAGAAATTGTTAAGAAAGTAA
AGTTTCCACATACTTCTAAGACAAACTTTAATTGTTGAAGTCTGCTTGAG
AAATGGTAGAAGACAATATGTGACAAAAATCGTCCTTTACTTCCATGTTT
TCTAGATAAGCGAtaataaaaaacagtttttcttttaattcaCTTCGAAA
TCCTCTAAGACGGCAATGATAGGTCTTCTTCGAGTGGTTGTCGTAGGTGT
TGATTCCGTGGCTTGCTCGGGTTCTTCCGTAGTTACCTCGGGTTCTTCCG
TTGTGACTTCGGGTTTTTCCGTGGTTACTTCGGGTTCTCCCGTTGTTACT
TCGGGTTCTTCCGTGGTTACTTCGGGTTCTGTGGTTACTTTGGGTTCTTC
TGTAGTTGTTGTGGTCgtagtggttgttgttgtaGGCGTTGTTGGAAGAA
GACAGTCTGGTTTTGTTCCACACACTTGTAGACATTCTACATCCCCAAAA
GCGATGTAAACTAATTTGCCAGGTGGCGAGTAGTGAAATTTGACAGAAAG
TCGAGATACTCCAGCAACCATTCCTTGTTGTGATTGAAAgtggaaaatat
tttgacattGTGGTTTTTCATAGAGTCTGTTGATCCCTTGCCATGCGTGA
AAGTCTGGGACAGCTGTTTCAAAACcaaactaaaaattaaaagtgaaaat
aagGATTTTGGTTTCGTTTGAAACTATTGATGTTATATCAATGCTGGCGA
GGTTTTAGTTGATTTTTTACACTAACTTACCGTCAATTTTGCACCAAAGC
GAAAATCATTTCCGCTTGTGAACCAAATTCCACTTTGAATCTTTCCTTGC
TCAATAGTCCTTTCTCGAAGCATTCTTTCACATTTTGCTGCACCAAAGTC
ACTTGATTTACATTGTTTTCCTTCAAAGTTGCAGTCGATCCCTGTTGCTT
CGATTGATGAAAGTTTAGTGTTGTAACCCTTGACGTGAACTTCAATTCTT
CTTTGTGAGAAGCCACCtgttattttgaaagttttcccTCCATCTATAAT
ACTCTTTGCGTTCGGTGTTTTACTATGCGAAGCATCAACATTCTGTACAA
CGTCAACGAACTTGATCGTTAAATCTGTTGAACGAAATCCATCTCCcaaa
tttaaaatgaattttgaattgtATTGACCGTTAACTGATCGAGTGAGTGC
GTCACATTTTGATTCGATTTTGTTGACGAAAACCACCAAAAGAACAAAAA
CGTGTACGAAGTTCATTTCAATCCAATTATGTCTCTTCTGCTCGAAGTAA
AC Run BLAST on NCBI transcript from alignment at sc0000039:461188..462854- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004129 ID=TCONS_00004129|Name=TCONS_00004129|organism=Clytia hemisphaerica|type=transcript|length=1667bp|location=Sequence derived from alignment at sc0000039:461188..462854- (Clytia hemisphaerica)
AAAGTAAGTTACAATCTTTTAGATTCTTCACCTCTAAAATATCTTTGCAA
CGATGCATAGCTTACTATTAAAGCATTCTGAGAAATTGTTAAGAAAGTAA
AGTTTCCACATACTTCTAAGACAAACTTTAATTGTTGAAGTCTGCTTGAG
AAATGGTAGAAGACAATATGTGACAAAAATCGTCCTTTACTTCCATGTTT
TCTAGATAAGCGATAATAAAAAACAGTTTTTCTTTTAATTCACTTCGAAA
TCCTCTAAGACGGCAATGATAGGTCTTCTTCGAGTGGTTGTCGTAGGTGT
TGATTCCGTGGCTTGCTCGGGTTCTTCCGTAGTTACCTCGGGTTCTTCCG
TTGTGACTTCGGGTTTTTCCGTGGTTACTTCGGGTTGTTCTGTGGCTACT
TCGGGTTGTTCTGTGGTGGCCTCGGGTTGTTCTGTGGTGGCCTCAGGTTG
TTCTGTGGTTACTTCGGGTTCTCCCGTTGTTACTTCGGGTTGTTCCGTTG
TTACTTCGGGTTGTTCCGTGGTTACTTCGGGTTCTTCCGTGGTGACTTCG
GGTTGTTCCGTTGTTACTTCGGGTTGTTCCGTTGTTACTTCGGGTTGTTC
CGTGATCACTTCGGGTTGTTCTGTGGCTACTTCGGGTTGTTCTGTGGTGG
CCTCGGGTTGTTCTGTGGTGGCCTCAGGTTGTTCTGTGGTTACTTCAGGT
TCTCCCGTTGTTACTTCGGGTTCTTCCGTGGTTACTTCGGGTTCTGTGGT
TACTTTGGGTTCTTCTGTAGTTGTTGTGGTCGTAGTGGTTGTTGTTGTAG
GCGTTGTTGGAAGAAGACAGTCTGGTTTTGTTCCACACACTTGTAGACAT
TCTACATCCCCAAAAGCGATGTAAACTAATTTGCCAGGTGGCGAGTAGTG
AAATTTGACAGAAAGTCGAGATACTCCAGCAACCATTCCTTGTTGTGATT
GAAAGTGGAAAATATTTTGACATTGTGGTTTTTCATAGAGTCTGTTGATC
CCTTGCCATGCGTGAAAGTCTGGGACAGCTGTTTCAAAACCAAACTAAAA
ATTAAAAGTGAAAATAAGGATTTTGGTTTCGTTTGAAACTATTGATGTTA
TATCAATGCTGGCGAGGTTTTAGTTGATTTTTTACACTAACTTACCGTCA
ATTTTGCACCAAAGCGAAAATCATTTCCGCTTGTGAACCAAATTCCACTT
TGAATCTTTCCTTGCTCAATAGTCCTTTCTCGAAGCATTCTTTCACATTT
TGCTGCACCAAAGTCACTTGATTTACATTGTTTTCCTTCAAAGTTGCAGT
CGATCCCTGTTGCTTCGATTGATGAAAGTTTAGTGTTGTAACCCTTGACG
TGAACTTCAATTCTTCTTTGTGAGAAGCCACCTGTTATTTTGAAAGTTTT
CCCTCCATCTATAATACTCTTTGCGTTCGGTGTTTTACTATGCGAAGCAT
CAACATTCTGTACAACGTCAACGAACTTGATCGTTAAATCTGTTGAACGA
AATCCATCTCCCAAATTTAAAATGAATTTTGAATTGTATTGACCGTTAAC
TGATCGAGTGAGTGCGTCACATTTTGATTCGATTTTGTTGACGAAAACCA
CCAAAAGAACAAAAACGTGTACGAAGTTCATTTCAATCCAATTATGTCTC
TTCTGCTCGAAGTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004129-exon-sc0000039-1575043694:462472..462854 | TCONS_00004129-exon-sc0000039-1575043694:462472..462854 | Clytia hemisphaerica | exon |
| TCONS_00004129-exon-sc0000039-1575043694:461188..462156 | TCONS_00004129-exon-sc0000039-1575043694:461188..462156 | Clytia hemisphaerica | exon |
| TCONS_00004129-exon-sc0000039-1510915933:462472..462854 | TCONS_00004129-exon-sc0000039-1510915933:462472..462854 | Clytia hemisphaerica | exon |
| TCONS_00004129-exon-sc0000039-1510915933:461188..462156 | TCONS_00004129-exon-sc0000039-1510915933:461188..462156 | Clytia hemisphaerica | exon |
| TCONS_00004129-exon-sc0000039-1491911889:462472..462854 | TCONS_00004129-exon-sc0000039-1491911889:462472..462854 | Clytia hemisphaerica | exon |
| TCONS_00004129-exon-sc0000039-1491911889:461188..462156 | TCONS_00004129-exon-sc0000039-1491911889:461188..462156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:461188..462854 - |
Blast
The following BLAST results are available for this feature:
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