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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96735_cuf5 >transcript:BL96735_cuf5-protein ID=transcript:BL96735_cuf5-protein|Name=transcript:BL96735_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=419bp
DQVAAQTTTALPSSTTRTTIMTTSTAATTTPVTTTTAATTTPATTTAATT TPGTTTPVTTSAATATPVTTTTATTTPGTTTVATTTPETPTTATFTPGTI TAATTTPGTTSAAPTTLEATTVATTTPETTFAPTTSPTTSTAATTPTATV PATTTSASTPGTGTATSNTAADITGTTHVTTAPTTTATSADSISAASTTS TAATTSTAATAATAPQSGTSQATVMRTSLPGVMSPSPGESTSGATTGCPP GYAPFGGSCFKAYNKDKTYNQARQVCAADGGLLAMPRDKDEDNFLRDLKN SVDPNSPFWFGLSSQKSEGGWVWEDGTPYNTAADRQYGGWQLGEPSNKGG GGGVCANHFETGWNDAPCSSAQKFICQLNGAVRCPLGYLRCGHGHACILA WKRCDGRTDCSDGSDEEGC Run BLAST on NCBI mRNA from alignment at Sc0000286:212983..217477- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96735_cuf5 ID=transcript:BL96735_cuf5|Name=transcript:BL96735_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4495bp|location=Sequence derived from alignment at Sc0000286:212983..217477- (Branchiostoma lanceolatum) TAGATCAAGGTGTGCGTTGTATTCACCATCGTTATCATAATTACTTATAA
GAACATTCTAACATTATCATCCCTGGGTCAGTATGTATGCATTATCATAG
TGGTAAGTTTGTTTCCAGCTCCCATATTTACCTGCTAAAACTGATATGCT
GTTTAGTAAATACTTTCGTTGTTAACATGTTCTCTCCTCCCTTTGGCTGT
TTTCTAAGCAGTTTTCCCTTACTGTTTTACTTTGGATCTCATTTCATTTT
ATCTTATTACGTGCAATGTCTGTCTCTTTTCTCCTCCCTCGTTCAAATCG
CTACTTGTCACGAATGGTGAACAGTTTAAACACTTTACAAGGACATTCGC
ATGTACGACCTGTGTTATGGTTGACTAGCGATACTTTCCAAGCTCGGCTA
CGGCTGGTTTTTGACATGTTTTTAGGCTCCGCCTTCCAATACCGTGCCCT
AGACACAGTGGGTAACAACCCGCTGCTCCAACGGCCCCAATAGGCTATGG
TACCTTTACCTTTACCTAGGCGTTTTTGTTGGGTTATATATTTTTCCCGT
TTTCTTTATGTCGCAAAGCTAAACAAGCCGCAGCCGAAACTCTGCCTGGA
CAGTAGATTTTATTAAGCGAATCTATATGACATTGTGATATATTATTGAT
GTGGTCTGTTCGTTTCTTGTGACACGATGTGCCGTATGTGTAACTTCATC
TCTCATAATTCTACCACCAAATAAAAAAAAGGCAATTCATAGATATCATG
GTGCAGAATCAGTAATCCCTGAGGGGATATGCATACTTCAGATATTCAGG
TCTTCCAGACATTTTTGAGAATGCCTTAATAACACCGTTATCTACAGAAT
GATGTAGCGGTCTGTCTGATTGTCTTGTCAAATATTTCATTTTCCGTATT
GAACAAGTGGCGGCGAGAATAGGCGTTGCATGTGACTTGCGTCCGCCGTC
ACTTTGTCTTGTCCCTTTTGTATGTTTGATGTTTCTGTGAATAAAAAACG
AATAAAAAAAGAAGATGTAGCGGTGTGAGTGTAGCCGGCGGACTTATGTG
AGTTGGGGCTTAAATATTTGCTATAACAGGCCTCAAATAACCATTTTATG
TGTCACTAACTTTATAGACTGATGCAGGTTAATAACATGTTTGACTATCT
AGATAAACATAACTGGCCCGTCTTTCCATGTGGTTGGGCTTGGCGAGTTG
GCAGCCTCGACAGAGCTTATAGAAATACACAGGAGTAACAACGGGTGTGT
CCATGCTTTTATAATTAATGCATAGTAATGTACTTCTTTTTTTCAGGAAC
CTGTCAAAACAGAGGAACTGTAACAACACAAAACTATTTATAGATAACGA
GCTTTTTTCAAGACATCTAAGGACCAACTCCTTGTCTTCACAGCTCAGTG
TCAAGATCAACTCTAATAATCTCTATTCTTTAGGATTTTTCTAATGAAAC
TACTATCACTGCAAATTTTTCTAAAGAAACTAATGTCAATTCACTTTCCA
TTGTTATAATGAAAAAGAAATCAATACAAGAAAACTGTGCTCTGTTTTCT
GCTGGCAACAGGTGTATTTTACAGAATATCTGTAATGTCATATTACCTGC
GTGACTAATGGCATTTCCTGTGTCATGAAAACACCGTCTGATGAATAAAT
TATTACTCCGAATTGTCCTGACCCGTCTTTTGTGAAGGGATCACGAGCTC
GAGACGGGTCGTTTTGTGTCTGCCTGTCATTACGAAAAATTACACTGAGT
TACACTCCTTTGTTGTTAAACACGCATCATGATGACATTGTTGAAAACTA
TAATTTCGGAATTTCATGTTGTTCAGAGTTTGTTTCTGTTCACGTCCTTT
ATGTACTGAATATTTTGCTGGATCAACAGTAGCCTCACAAATCCAACAAA
ATTACTGAGCAAAAAGCTGAGCTTACCACATAGTTTCTAGAAACAAAACA
AACCGTAGAGTAAAAGGTTTTATAAGACATGCAAGAATCATATTCCATGT
CGGACCATGGAAAAATATTTAGAACTAACTTAAACATGATTTGAATTATG
CTCTGCAATCAGCAAAATTAGAATCAATGCCCACCCTCTTGAACTAATAA
AATTGCGGTACAAGAACTGATCTGTGTTCCATAGAACTTGTTAATCCTGC
ATGTGACGGTGGAAGACGAAACACATTTTAATTCAAATTGCTCTTTCAAC
GATCACAAAAGAAAGGAGCTGTTCAAGAAGCCACCAAACTGTATCCTAAT
TTCTCCACGTTTACAGACAAAAAACTACTCTCCTCTTAACATCACAAAAC
CCAGACATTACAGCAAAAGCCCACGGGATCATTCGTCTTCGATTGTCTCT
GAAAAAGAAGAAGTTAAATCCAATAAGTTAGAATCTACATGTATGATGTA
GTGTCAGTATTTAGACGAGAGAAGTCACATGCTATAAAATTGTTCCCTAC
TGTCTGTCCTTCCTTTCCATGTTACATGTATTTGTAACTAGTCTCCAGGC
AAGAACTTGCAATAAAATTTCACAATATGTGGAACTTCTAAATTCAAAGA
GTCTCCTTCCTATTACAAACTAGGATATAACTCAAGCCAACTCACGAACG
AAAATAGTTTCATCAGGTTGGCTAAAGAAACTCCAAATATCCTTTAGCCA
ACTCAGTTTTTTCATGCATGCATTACAAAACATGTGAACAACATTTCCCT
CAAATGTATGTGCGGCTGATCGATGTCATCGTTTTTTTTTCCAGTTGCAG
CCCAAACAACCACAGCTCTACCTTCATCCACTACAAGAACCACAATCATG
ACAACTAGTACTGCGGCCACTACTACTCCTGTAACTACTACTACTGCGGC
CACTACTACTCCTGCAACTACTACTGCGGCAACTACTACTCCTGGCACCA
CTACTCCTGTTACTACTTCTGCGGCCACTGCTACTCCTGTAACTACTACT
ACGGCCACTACTACTCCTGGAACTACTACTGTGGCCACTACTACTCCTGA
AACTCCTACTACGGCCACTTTTACTCCTGGAACTATTACTGCAGCCACTA
CTACTCCTGGAACTACTTCTGCAGCCCCTACTACTCTTGAAGCTACTACT
GTTGCTACTACTACTCCTGAAACTACTTTTGCACCCACTACTTCTCCTAC
TACTAGTACTGCTGCTACTACTCCTACTGCTACTGTTCCTGCAACCACTA
CTTCTGCTTCTACTCCTGGAACTGGAACTGCTACTTCTAATACTGCTGCT
GATATTACTGGCACCACTCATGTAACTACTGCTCCTACTACTACTGCAAC
TTCTGCTGATTCTATTTCTGCTGCAAGTACTACTAGTACTGCTGCTACAA
CTTCTACTGCTGCAACTGCTGCTACTGCACCACAGTCTGGTACATCCCAA
GCGACAGTCATGCGCACCTCGTTACCAGGAGTGATGTCACCATCACCGGG
GGAAAGTACTTCAGGAGCAACAACAGGTGAGGTTAATGCACATTTGACAA
CATTGGTGAAGGCTTGGCTAAGACAGTGACCAAAAGACAGGTTACTCTTC
ATGACACTTTTGAAATGTAGACTGAGACAACTGATAAGGGATTATGTATG
GTGACCATACCATGGTACATACGTTTACTCCGGGAAAGGCCACAGTAGGA
GGCGCTTCCTAAGTCCTATACCCATGACAAAGCCATCTCATCTTTAATGT
TTTTTATAGGTTGTCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTTC
AAGGCGTACAATAAAGACAAAACCTACAACCAGGCCAGACAGGTGTGTGC
AGCGGACGGAGGGCTTCTGGCCATGCCGAGGGACAAAGACGAGGACAACT
TCTTGAGGGACCTGAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTTC
GGCCTGAGCAGTCAGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGAC
TCCATACAACACAGCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGGG
AACCCAGCAATAAAGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGAA
ACTGGATGGAACGACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCCA
GCTGAATGGTGGTATGTCATTTAACAATATATAGTTACACATTACATGCG
CACAACACAATCAGACAATGTCTATATTGTTAGCAGTTAGATGCTGCAAT
ATCTACTGTTGTGTCTTTTGATTTGTGAAAGGTATAAGCAAGTTTCACCA
AAAGGGCTAAAAATACTGGGTGAATGAGTTCATTCTGGTTTAAAGCTTAT
AATTAGATAACATGCTTTTCTGCAGATGGAACATAGCAAAAGGAAGAACA
CAAATAACAGGTTGTTTCTCTACGCAGCAGTCCGCTGCCCCCTGGGGTAC
CTCCGGTGCGGACACGGACATGCCTGCATCCTGGCCTGGAAGCGCTGTGA
CGGGCGGACGGACTGTTCAGACGGGAGTGACGAGGAAGGTTGTGG Coding sequence (CDS) from alignment at Sc0000286:212983..217477- >transcript:BL96735_cuf5 ID=transcript:BL96735_cuf5|Name=transcript:BL96735_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=5028bp|location=Sequence derived from alignment at Sc0000286:212983..217477- (Branchiostoma lanceolatum) GATCAAGTTGCAGCCCAAACAACCACAGCTCTACCTTCATCCACTACAAG AACCACAATCATGACAACTAGTACTGCGGCCACTACTACTCCTGTAACTA CTACTACTGCGGCCACTACTACTCCTGCAACTACTACTGCGGCAACTACT ACTCCTGGCACCACTACTCCTGTTACTACTTCTGCGGCCACTGCTACTCC TGTAACTACTACTACGGCCACTACTACTCCTGGAACTACTACTGTGGCCA CTACTACTCCTGAAACTCCTACTACGGCCACTTTTACTCCTGGAACTATT ACTGCAGCCACTACTACTCCTGGAACTACTTCTGCAGCCCCTACTACTCT TGAAGCTACTACTGTTGCTACTACTACTCCTGAAACTACTTTTGCACCCA CTACTTCTCCTACTACTAGTACTGCTGCTACTACTCCTACTGCTACTGTT CCTGCAACCACTACTTCTGCTTCTACTCCTGGAACTGGAACTGCTACTTC TAATACTGCTGCTGATATTACTGGCACCACTCATGTAACTACTGCTCCTA CTACTACTGCAACTTCTGCTGATTCTATTTCTGCTGCAAGTACTACTAGT ACTGCTGCTACAACTTCTACTGCTGCAACTGCTGCTACTGCACCACAGTC TGGTACATCCCAAGCGACAGTCATGCGCACCTCGTTACCAGGAGTGATGT CACCATCACCGGGGGAAAGTACTTCAGGAGCAACAACAGGTTGTCCTCCT GGCTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCGTACAATAAAGACAA AACCTACAACCAGGCCAGACAGGTGTGTGCAGCGGACGGAGGGCTTCTGG CCATGCCGAGGGACAAAGACGAGGACAACTTCTTGAGGGACCTGAAGAAC AGCGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTGAGCAGTCAGAAAAG CGAGGGTGGTTGGGTGTGGGAAGACGGGACTCCATACAACACAGCCGCAG ACCGACAGTATGGGGGATGGCAGCTGGGGGAACCCAGCAATAAAGGAGGA GGGGGAGGAGTCTGCGCCAACCACTTCGAAACTGGATGGAACGACGCGCC CTGCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAATGGTGCAGTCCGCT GCCCCCTGGGGTACCTCCGGTGCGGACACGGACATGCCTGCATCCTGGCC TGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGACGGGAGTGACGAGGA AGGTTGTGATCAAGTTGCAGCCCAAACAACCACAGCTCTACCTTCATCCA CTACAAGAACCACAATCATGACAACTAGTACTGCGGCCACTACTACTCCT GTAACTACTACTACTGCGGCCACTACTACTCCTGCAACTACTACTGCGGC AACTACTACTCCTGGCACCACTACTCCTGTTACTACTTCTGCGGCCACTG CTACTCCTGTAACTACTACTACGGCCACTACTACTCCTGGAACTACTACT GTGGCCACTACTACTCCTGAAACTCCTACTACGGCCACTTTTACTCCTGG AACTATTACTGCAGCCACTACTACTCCTGGAACTACTTCTGCAGCCCCTA CTACTCTTGAAGCTACTACTGTTGCTACTACTACTCCTGAAACTACTTTT GCACCCACTACTTCTCCTACTACTAGTACTGCTGCTACTACTCCTACTGC TACTGTTCCTGCAACCACTACTTCTGCTTCTACTCCTGGAACTGGAACTG CTACTTCTAATACTGCTGCTGATATTACTGGCACCACTCATGTAACTACT GCTCCTACTACTACTGCAACTTCTGCTGATTCTATTTCTGCTGCAAGTAC TACTAGTACTGCTGCTACAACTTCTACTGCTGCAACTGCTGCTACTGCAC CACAGTCTGGTACATCCCAAGCGACAGTCATGCGCACCTCGTTACCAGGA GTGATGTCACCATCACCGGGGGAAAGTACTTCAGGAGCAACAACAGGTTG TCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCGTACAATA AAGACAAAACCTACAACCAGGCCAGACAGGTGTGTGCAGCGGACGGAGGG CTTCTGGCCATGCCGAGGGACAAAGACGAGGACAACTTCTTGAGGGACCT GAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTGAGCAGTC AGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGACTCCATACAACACA GCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGGGAACCCAGCAATAA AGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGAAACTGGATGGAACG ACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAATGGTGCA GTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACACGGACATGCCTGCAT CCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGACGGGAGTG ACGAGGAAGGTTGTGATCAAGTTGCAGCCCAAACAACCACAGCTCTACCT TCATCCACTACAAGAACCACAATCATGACAACTAGTACTGCGGCCACTAC TACTCCTGTAACTACTACTACTGCGGCCACTACTACTCCTGCAACTACTA CTGCGGCAACTACTACTCCTGGCACCACTACTCCTGTTACTACTTCTGCG GCCACTGCTACTCCTGTAACTACTACTACGGCCACTACTACTCCTGGAAC TACTACTGTGGCCACTACTACTCCTGAAACTCCTACTACGGCCACTTTTA CTCCTGGAACTATTACTGCAGCCACTACTACTCCTGGAACTACTTCTGCA GCCCCTACTACTCTTGAAGCTACTACTGTTGCTACTACTACTCCTGAAAC TACTTTTGCACCCACTACTTCTCCTACTACTAGTACTGCTGCTACTACTC CTACTGCTACTGTTCCTGCAACCACTACTTCTGCTTCTACTCCTGGAACT GGAACTGCTACTTCTAATACTGCTGCTGATATTACTGGCACCACTCATGT AACTACTGCTCCTACTACTACTGCAACTTCTGCTGATTCTATTTCTGCTG CAAGTACTACTAGTACTGCTGCTACAACTTCTACTGCTGCAACTGCTGCT ACTGCACCACAGTCTGGTACATCCCAAGCGACAGTCATGCGCACCTCGTT ACCAGGAGTGATGTCACCATCACCGGGGGAAAGTACTTCAGGAGCAACAA CAGGTTGTCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTTCAAGGCG TACAATAAAGACAAAACCTACAACCAGGCCAGACAGGTGTGTGCAGCGGA CGGAGGGCTTCTGGCCATGCCGAGGGACAAAGACGAGGACAACTTCTTGA GGGACCTGAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTTCGGCCTG AGCAGTCAGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGACTCCATA CAACACAGCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGGGAACCCA GCAATAAAGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGAAACTGGA TGGAACGACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCCAGCTGAA TGGTGCAGTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACACGGACATG CCTGCATCCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTGTTCAGAC GGGAGTGACGAGGAAGGTTGTGATCAAGTTGCAGCCCAAACAACCACAGC TCTACCTTCATCCACTACAAGAACCACAATCATGACAACTAGTACTGCGG CCACTACTACTCCTGTAACTACTACTACTGCGGCCACTACTACTCCTGCA ACTACTACTGCGGCAACTACTACTCCTGGCACCACTACTCCTGTTACTAC TTCTGCGGCCACTGCTACTCCTGTAACTACTACTACGGCCACTACTACTC CTGGAACTACTACTGTGGCCACTACTACTCCTGAAACTCCTACTACGGCC ACTTTTACTCCTGGAACTATTACTGCAGCCACTACTACTCCTGGAACTAC TTCTGCAGCCCCTACTACTCTTGAAGCTACTACTGTTGCTACTACTACTC CTGAAACTACTTTTGCACCCACTACTTCTCCTACTACTAGTACTGCTGCT ACTACTCCTACTGCTACTGTTCCTGCAACCACTACTTCTGCTTCTACTCC TGGAACTGGAACTGCTACTTCTAATACTGCTGCTGATATTACTGGCACCA CTCATGTAACTACTGCTCCTACTACTACTGCAACTTCTGCTGATTCTATT TCTGCTGCAAGTACTACTAGTACTGCTGCTACAACTTCTACTGCTGCAAC TGCTGCTACTGCACCACAGTCTGGTACATCCCAAGCGACAGTCATGCGCA CCTCGTTACCAGGAGTGATGTCACCATCACCGGGGGAAAGTACTTCAGGA GCAACAACAGGTTGTCCTCCTGGCTACGCTCCATTCGGGGGTTCGTGCTT CAAGGCGTACAATAAAGACAAAACCTACAACCAGGCCAGACAGGTGTGTG CAGCGGACGGAGGGCTTCTGGCCATGCCGAGGGACAAAGACGAGGACAAC TTCTTGAGGGACCTGAAGAACAGCGTGGATCCCAACTCCCCTTTCTGGTT CGGCCTGAGCAGTCAGAAAAGCGAGGGTGGTTGGGTGTGGGAAGACGGGA CTCCATACAACACAGCCGCAGACCGACAGTATGGGGGATGGCAGCTGGGG GAACCCAGCAATAAAGGAGGAGGGGGAGGAGTCTGCGCCAACCACTTCGA AACTGGATGGAACGACGCGCCCTGCTCGTCTGCGCAGAAGTTCATCTGCC AGCTGAATGGTGCAGTCCGCTGCCCCCTGGGGTACCTCCGGTGCGGACAC GGACATGCCTGCATCCTGGCCTGGAAGCGCTGTGACGGGCGGACGGACTG TTCAGACGGGAGTGACGAGGAAGGTTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000286 | genome | Sc0000286:212983..217477 - |
Properties
Property Name | Value |
Transcript id | BL96735_cuf5 |
Biotype | protein_coding |
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