transcript:BL97380_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97380_cuf1
Unique Nametranscript:BL97380_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97380_cuf1

>transcript:BL97380_cuf1-protein ID=transcript:BL97380_cuf1-protein|Name=transcript:BL97380_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=184bp
VPGYTERDGTHYKVFDQAMTYSDAQHACAVDGGHLAHMTTQELHDFLVSL
IQESGADGDYWIGLQDVAHEGDWGLNTWAWSDGTPISDCFSNWAPGEPGN
SAGNDCGQLWEGMGLKWDDTYCDIQKNFICQIGPDEDCAPQVEECTEGQR
QCLNGLCITEDYWCDGQFQDCSGGEDEANCEGEC
Run BLAST on NCBI

mRNA from alignment at Sc0000225:199478..202590-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97380_cuf1 ID=transcript:BL97380_cuf1|Name=transcript:BL97380_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3113bp|location=Sequence derived from alignment at Sc0000225:199478..202590- (Branchiostoma lanceolatum)
CAGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGAC
CAAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGG
GCACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCC
TGATCCAGGAGTCTGGTGCAGACGGGGACTACTGGATCGGACTGCAGGAT
GTTGCAGTGAGTACCCGAAATGATGCAAATGTCACCTTTTCAAGACCGTA
TCCTTTTCTGATCTATACAATTCTTTGACTTTAAAAAAATTGTGTTGTTT
CTAATGCGTGCATTTTAGCAATATGTGGTGAGCTGCCCATGGAATTCCTT
ACTCTCAGTATACGGCTAGCGGCTGGACACTTGGTGGCATTTCAAAAAAG
CAGTTTTTGAATTTGATAGAAAATTGATTAGATATGTGCATTAGGGGAAT
AGCCATAAGCCACATTCTGGAATATTATTTTTATGTAAGGACTGCGACGT
CGACGATGCGTAACAGTTAGATCATTCGATTCGAAGCCCATATGTTTCGG
GTTCGACACTCGCCATGCCCCGGCGTTCTGCCCTAGGGAAAGGCACTTTA
CACGCAATACTAAAGTGATGGATAGGACAAAGCGAGATAACTGGGAAATA
GTGTTGCTCAACCCACACGTACTAAAGGAGGTGCTCCCAATGTGACCTGC
ACAGCAGTTTGAGGGGGGATTCGACCTCCATAGTCACATTAACCTATTAA
ACCCAGTGGCCAACCCGGTATTGACCATTTAGAACTGTTTGTAAACGTGG
ACTTTCAGTTTCAATGCGTATTTGCTACTAGAGTGTTGGTGTTTTTTTAA
CCCTGTGCCCGTTATTCCGTTAAGATTTGATTCGCTTTGGCACCTTTGAG
AAGTTGATATTGTGTGGCTGTTGATATAGCCTTTTCCTTAAGTGAATCAT
ACAATACGAGTCTATTTGGGTCCAATTCCTCTAACCCCCTTGAAAGTTAG
CTGGGACAGGGCCCAAGTCTCATGTTGTCAGACCTGGGCGGTGTTGCTGA
AAAGTGTTGTGCTATAAAAAATGTGTGCTAGTATTCTATGCAAACGACTT
TAAAGTATCAAACTTCATTTCATAGTTCAACACACTTGTAAACTAATTAT
AACGAGATATAGACACTTTAATTGAGGGACTCACATTGGCTGATTGGTAA
TGGTCATCTTTTAACATAATTTCTGTTGATCTGTCAAAACTGAAGTGTGC
AAACATCAGAGACGGATTTGTGTGCCAACATTTGCATAATTGCTAACAAG
AACCGTTATTTCTTTTACAGCATGAAGGTGACTGGGGGTTAAACACATGG
GCCTGGTCTGATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCACC
GGGAGAGCCCGGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAG
GCATGGGTCTCAAATGGGACGACACCTATTGTGACATCCAGAAGAACTTC
ATCTGCCAAATAGGTAATTCTTTGTCTCATTCAGAGATTCACAGATTCAG
AGTGAACTTTTTCATTTGCTTATTATCTGCATCATCTAAATTCATTAACC
CCCAAATAGCCCCTACAGGGGTAAAGTAGGGGGATTGATGTCCCGGGATA
AGGCGGGCAGGCCTGCAGGCTGGCACGGGACGACTCAATGGTGGGAGCCG
TCGCAACCGTGCCAGGCAGGGTGTTCCACTGTGGGATAGTACGGGGAAAG
ACTGAGTGTTTATATATATCATTTATTGCGTGAATGGTGTAAAACTTAAG
GTCGTGGCTCCCCCGGGTGCGCCCCTGGGCTGGTTTCAGCAAACTGTGTC
TATATTAATATGGTTGTTAACAACTTTGTAGAAGAAGGTGAGGCGGACGT
TTCTCCTCCTTTCAGAGAGAAGGGGTCACTGCAGGTCGTTGAGCATTTGT
GTCAGGTATAATCGTACATGGCTACTGTCGAACAAGACTTTACGATTTTG
TTTCATTATATTTTTCTACTGTAACGTCAATAAAGAATTTTAATCTTTGC
CATTTGCTTTTTGCAGGTCCTGATGAAGACTGTGCACCACAAGGTAATGT
TAATCTTGTACTGCATCTAAAATATTAGTATTTTGGCCTATTTTTGGACG
AATAGTACCTTCATTTTACATGTACACTCTTTGGATATATTTCATCAGTT
TAGGACCGAACGCAACACTTGAAATTAGTACGTCCTGTTTAATCTGTTTG
ATTCTGTAAAGTTTCTTCCTGCGTACTTCCTGCACGTCTTGGCATTGTCA
CCTGCACCTTGAATTACCAGTATAATCTCTTTTAATCGTTGTTGTTGCGA
ACTTTGTGACTTCGGGTGCCAGTGTGACAAATAGATCATTTGCTTACACA
GCCCCCTCAGATCCTCTGTTCTTGGAAAGCGCTTATTATAGACAGCAATT
CGCACTGTAATCCTTGATAAGGCTAAACGAAGAACCCCCTTTTAGACTAT
TTTTTTGCTGTTAATTCTTTTCGCTCTAAAAACCTTCGCCAAGAAAGGCA
TGAAGTCGGGGCTATGTGGCTGTCTTTTATGTTGTTTAATCTGTGTTGGC
AACGTACGTCGAGAAGTCTTGGATGGATATTCATAACATTTCGTACGTCA
GTAAGTTTTGACAAAGTAAAAAAAAAATATGGTTAGATTACTGCCCCCTT
CCCCTCCTTTTACTTGCCTTCCATATTGTTCTGCAGCAGAACTTCTAGAA
AACTAAAAGTCTAAGGTAATGGAACCCATATAATGAAATCCAACCTTTTT
CTCCTTCTAAGTTACTGTCCTTTCGCTTTTTTTCCATCGAAGGAGAGGGG
GATCAGACTTGCCCAAACTGCAGGCAAAATTCTGTGTTTCATGATTATGG
CGTAAACAGTTTACACTTAGAGGCGAGTCTAATGTGAGTTTATAGCATGT
GATAAAACGGCATTTTCCTCCATGTTTTTACAAGTTGAGGAGTGTACGGA
GGGTCAGCGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGT
GTGATGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGT
GAAGGCGAATGTG

Coding sequence (CDS) from alignment at Sc0000225:199478..202590-

>transcript:BL97380_cuf1 ID=transcript:BL97380_cuf1|Name=transcript:BL97380_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2208bp|location=Sequence derived from alignment at Sc0000225:199478..202590- (Branchiostoma lanceolatum)
GTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGACCA
AGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGGGC
ACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCCTG
ATCCAGGAGTCTGGTGCAGACGGGGACTACTGGATCGGACTGCAGGATGT
TGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTGATGGAA
CTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCCGGAAAC
AGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCTCAAATG
GGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAATAGGTC
CTGATGAAGACTGTGCACCACAAGTTGAGGAGTGTACGGAGGGTCAGCGC
CAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGATGGGCA
GTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAGGCGAAT
GTGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGAC
CAAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGG
GCACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCC
TGATCCAGGAGTCTGGTGCAGACGGGGACTACTGGATCGGACTGCAGGAT
GTTGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTGATGG
AACTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCCGGAA
ACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCTCAAA
TGGGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAATAGG
TCCTGATGAAGACTGTGCACCACAAGTTGAGGAGTGTACGGAGGGTCAGC
GCCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGATGGG
CAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAGGCGA
ATGTGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTG
ACCAAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGA
GGGCACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTC
CCTGATCCAGGAGTCTGGTGCAGACGGGGACTACTGGATCGGACTGCAGG
ATGTTGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTGAT
GGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCCGG
AAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCTCA
AATGGGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAATA
GGTCCTGATGAAGACTGTGCACCACAAGTTGAGGAGTGTACGGAGGGTCA
GCGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGATG
GGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAGGC
GAATGTGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTT
TGACCAAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATG
GAGGGCACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTC
TCCCTGATCCAGGAGTCTGGTGCAGACGGGGACTACTGGATCGGACTGCA
GGATGTTGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTG
ATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCC
GGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCT
CAAATGGGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAA
TAGGTCCTGATGAAGACTGTGCACCACAAGTTGAGGAGTGTACGGAGGGT
CAGCGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGA
TGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAG
GCGAATGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97380gene:BL97380Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97380_cuf1transcript:BL97380_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97380_cuf1-E1BL97380_cuf1-E1-1564476830-397307Branchiostoma lanceolatumexon
BL97380_cuf1-E2BL97380_cuf1-E2-1564476830-397304Branchiostoma lanceolatumexon
BL97380_cuf1-E3BL97380_cuf1-E3-1564476830-397302Branchiostoma lanceolatumexon
BL97380_cuf1-E4BL97380_cuf1-E4-1564476830-397300Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000225genomeSc0000225:199478..202590 -
Properties
Property NameValue
Transcript idBL97380_cuf1
Biotypeprotein_coding