transcript:BL97329_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97329_cuf4
Unique Nametranscript:BL97329_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97329_cuf4

>transcript:BL97329_cuf4-protein ID=transcript:BL97329_cuf4-protein|Name=transcript:BL97329_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=241bp
SVDLIIDGVGALALSGLPSLPIDAVVTFSVWNFDDFVPEVEDPFYPPTAT
ANFKDVSFPASSDQLCRYGEPFRNGDSAILSFMAGVGTEAHQDDVVPFRT
VPYHSCIPCLRDCDNFYCSNDCDGSVVSEYHVLVDNLVLDVNRTVEDGSD
NVTVPAKYHMTIKATTASGRQVVASSDGVYIDVTPPRFESLFHVDTSWSM
DEQTEFQGSNSSVAVRWRAIDMESKITEYRWAIGTSKGTTD
Run BLAST on NCBI

mRNA from alignment at Sc0000207:407832..409225+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97329_cuf4 ID=transcript:BL97329_cuf4|Name=transcript:BL97329_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1394bp|location=Sequence derived from alignment at Sc0000207:407832..409225+ (Branchiostoma lanceolatum)
GGTCTGTTGACCTCATCATCGACGGAGTCGGAGCCCTCGCTTTGTCAGGG
TTACCCTCACTTCCCATCGATGCGGTTGTTACGTTCAGCGTCTGGAATTT
TGACGACTTTGTTCCAGAGGTAGAGGACCCATTTTATCCACCGACAGCAA
CAGCAAACTTTAAGGATGTGAGGTACGTGCATCATATCTGATAGCTGGAG
AACTTCTGATCAGGCCAGTAAGAAAGCTAGTGGTAAGATTGAGGGATGAC
CAGAACATGATGAATCTATTTAATTACGCGTACGGTGCAAGAGCATTTCA
TTTGTTCATTAGATATGTCATTTGTAGGATATTGGAGAAACATCATGCCA
ATTGTATAGATATTAATCTACTTCGTCATTAAACGGATTCTTGTTTTAAA
CTTTAAGCTTGTATCTCTGTTTTCAGCTTTCCAGCGAGCTCCGACCAACT
ATGTCGGTACGGCGAGCCTTTCCGCAATGGAGACAGCGCCATTTTGTCAT
TCATGGCAGGGGTGGGGACTGAGGCACACCAGGATGATGTTGTGCCTTTT
AGGACGGTAAGTGTTTCTGGCGATGCCTTAGAGGCGGAGCCCTCTTGAGA
GTATTTGGTAATTTTTGTTGTGAGCAGCCCGTGAGCACGCATAAGCCATG
CAACACGATGATACGCAAAATAACAGCTGCTGTATATGAATGAGGACTCA
GTTCGTACATGGCAACCAAAGTATCATTCACTCTTGCCGGTTCCTGCAGG
TCCCTTACCATTCGTGCATTCCTTGTTTGAGGGATTGTGACAACTTTTAC
TGTTCCAATGACTGTGATGGTTCTGTGGTCTCAGAATACCACGTCCTCGT
GGACAACTTGGTACTAGATGTAAACAGAACGGTCGAAGATGGTAGCGACA
ACGTCACGGTGCCGGCTAAATACCATATGACAATAAAAGCTACTACAGGT
GAGTTGATACTATTATTTTGCTTTATCTCCCAATCATCAATGGACTGTGG
TGTACTCACTTTGTTCTGTGTAAATAATGATCTATTTCACATCTATTTTC
TACCGTTTTCAGCGTCGGGGAGACAGGTCGTCGCTTCTTCCGACGGAGTT
TACATAGATGTGACACCACCAAGGTTTGAATCACTATTCCATGTGGACAC
ATCGTGGTCAATGGACGAGCAAACTGAATTCCAAGGATCGAATTCTTCCG
TCGCTGTTCGCTGGAGAGCTATCGACATGGAAAGCAAGGTAATGCCTACA
GAGATGTTTATTGATCAGTATAGAATATACATCTGACTGAAACTGTTACT
TGCAGCTAACAACGTTATTTTATTTTATTTCTTTTTTGCTTCTAGATTAC
GGAATATCGCTGGGCCATTGGCACTTCCAAAGGTACCACTGATA

Coding sequence (CDS) from alignment at Sc0000207:407832..409225+

>transcript:BL97329_cuf4 ID=transcript:BL97329_cuf4|Name=transcript:BL97329_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3615bp|location=Sequence derived from alignment at Sc0000207:407832..409225+ (Branchiostoma lanceolatum)
TCTGTTGACCTCATCATCGACGGAGTCGGAGCCCTCGCTTTGTCAGGGTT
ACCCTCACTTCCCATCGATGCGGTTGTTACGTTCAGCGTCTGGAATTTTG
ACGACTTTGTTCCAGAGGTAGAGGACCCATTTTATCCACCGACAGCAACA
GCAAACTTTAAGGATGTGAGCTTTCCAGCGAGCTCCGACCAACTATGTCG
GTACGGCGAGCCTTTCCGCAATGGAGACAGCGCCATTTTGTCATTCATGG
CAGGGGTGGGGACTGAGGCACACCAGGATGATGTTGTGCCTTTTAGGACG
GTCCCTTACCATTCGTGCATTCCTTGTTTGAGGGATTGTGACAACTTTTA
CTGTTCCAATGACTGTGATGGTTCTGTGGTCTCAGAATACCACGTCCTCG
TGGACAACTTGGTACTAGATGTAAACAGAACGGTCGAAGATGGTAGCGAC
AACGTCACGGTGCCGGCTAAATACCATATGACAATAAAAGCTACTACAGC
GTCGGGGAGACAGGTCGTCGCTTCTTCCGACGGAGTTTACATAGATGTGA
CACCACCAAGGTTTGAATCACTATTCCATGTGGACACATCGTGGTCAATG
GACGAGCAAACTGAATTCCAAGGATCGAATTCTTCCGTCGCTGTTCGCTG
GAGAGCTATCGACATGGAAAGCAAGATTACGGAATATCGCTGGGCCATTG
GCACTTCCAAAGGTACCACTGATTCTGTTGACCTCATCATCGACGGAGTC
GGAGCCCTCGCTTTGTCAGGGTTACCCTCACTTCCCATCGATGCGGTTGT
TACGTTCAGCGTCTGGAATTTTGACGACTTTGTTCCAGAGGTAGAGGACC
CATTTTATCCACCGACAGCAACAGCAAACTTTAAGGATGTGAGCTTTCCA
GCGAGCTCCGACCAACTATGTCGGTACGGCGAGCCTTTCCGCAATGGAGA
CAGCGCCATTTTGTCATTCATGGCAGGGGTGGGGACTGAGGCACACCAGG
ATGATGTTGTGCCTTTTAGGACGGTCCCTTACCATTCGTGCATTCCTTGT
TTGAGGGATTGTGACAACTTTTACTGTTCCAATGACTGTGATGGTTCTGT
GGTCTCAGAATACCACGTCCTCGTGGACAACTTGGTACTAGATGTAAACA
GAACGGTCGAAGATGGTAGCGACAACGTCACGGTGCCGGCTAAATACCAT
ATGACAATAAAAGCTACTACAGCGTCGGGGAGACAGGTCGTCGCTTCTTC
CGACGGAGTTTACATAGATGTGACACCACCAAGGTTTGAATCACTATTCC
ATGTGGACACATCGTGGTCAATGGACGAGCAAACTGAATTCCAAGGATCG
AATTCTTCCGTCGCTGTTCGCTGGAGAGCTATCGACATGGAAAGCAAGAT
TACGGAATATCGCTGGGCCATTGGCACTTCCAAAGGTACCACTGATTCTG
TTGACCTCATCATCGACGGAGTCGGAGCCCTCGCTTTGTCAGGGTTACCC
TCACTTCCCATCGATGCGGTTGTTACGTTCAGCGTCTGGAATTTTGACGA
CTTTGTTCCAGAGGTAGAGGACCCATTTTATCCACCGACAGCAACAGCAA
ACTTTAAGGATGTGAGCTTTCCAGCGAGCTCCGACCAACTATGTCGGTAC
GGCGAGCCTTTCCGCAATGGAGACAGCGCCATTTTGTCATTCATGGCAGG
GGTGGGGACTGAGGCACACCAGGATGATGTTGTGCCTTTTAGGACGGTCC
CTTACCATTCGTGCATTCCTTGTTTGAGGGATTGTGACAACTTTTACTGT
TCCAATGACTGTGATGGTTCTGTGGTCTCAGAATACCACGTCCTCGTGGA
CAACTTGGTACTAGATGTAAACAGAACGGTCGAAGATGGTAGCGACAACG
TCACGGTGCCGGCTAAATACCATATGACAATAAAAGCTACTACAGCGTCG
GGGAGACAGGTCGTCGCTTCTTCCGACGGAGTTTACATAGATGTGACACC
ACCAAGGTTTGAATCACTATTCCATGTGGACACATCGTGGTCAATGGACG
AGCAAACTGAATTCCAAGGATCGAATTCTTCCGTCGCTGTTCGCTGGAGA
GCTATCGACATGGAAAGCAAGATTACGGAATATCGCTGGGCCATTGGCAC
TTCCAAAGGTACCACTGATTCTGTTGACCTCATCATCGACGGAGTCGGAG
CCCTCGCTTTGTCAGGGTTACCCTCACTTCCCATCGATGCGGTTGTTACG
TTCAGCGTCTGGAATTTTGACGACTTTGTTCCAGAGGTAGAGGACCCATT
TTATCCACCGACAGCAACAGCAAACTTTAAGGATGTGAGCTTTCCAGCGA
GCTCCGACCAACTATGTCGGTACGGCGAGCCTTTCCGCAATGGAGACAGC
GCCATTTTGTCATTCATGGCAGGGGTGGGGACTGAGGCACACCAGGATGA
TGTTGTGCCTTTTAGGACGGTCCCTTACCATTCGTGCATTCCTTGTTTGA
GGGATTGTGACAACTTTTACTGTTCCAATGACTGTGATGGTTCTGTGGTC
TCAGAATACCACGTCCTCGTGGACAACTTGGTACTAGATGTAAACAGAAC
GGTCGAAGATGGTAGCGACAACGTCACGGTGCCGGCTAAATACCATATGA
CAATAAAAGCTACTACAGCGTCGGGGAGACAGGTCGTCGCTTCTTCCGAC
GGAGTTTACATAGATGTGACACCACCAAGGTTTGAATCACTATTCCATGT
GGACACATCGTGGTCAATGGACGAGCAAACTGAATTCCAAGGATCGAATT
CTTCCGTCGCTGTTCGCTGGAGAGCTATCGACATGGAAAGCAAGATTACG
GAATATCGCTGGGCCATTGGCACTTCCAAAGGTACCACTGATTCTGTTGA
CCTCATCATCGACGGAGTCGGAGCCCTCGCTTTGTCAGGGTTACCCTCAC
TTCCCATCGATGCGGTTGTTACGTTCAGCGTCTGGAATTTTGACGACTTT
GTTCCAGAGGTAGAGGACCCATTTTATCCACCGACAGCAACAGCAAACTT
TAAGGATGTGAGCTTTCCAGCGAGCTCCGACCAACTATGTCGGTACGGCG
AGCCTTTCCGCAATGGAGACAGCGCCATTTTGTCATTCATGGCAGGGGTG
GGGACTGAGGCACACCAGGATGATGTTGTGCCTTTTAGGACGGTCCCTTA
CCATTCGTGCATTCCTTGTTTGAGGGATTGTGACAACTTTTACTGTTCCA
ATGACTGTGATGGTTCTGTGGTCTCAGAATACCACGTCCTCGTGGACAAC
TTGGTACTAGATGTAAACAGAACGGTCGAAGATGGTAGCGACAACGTCAC
GGTGCCGGCTAAATACCATATGACAATAAAAGCTACTACAGCGTCGGGGA
GACAGGTCGTCGCTTCTTCCGACGGAGTTTACATAGATGTGACACCACCA
AGGTTTGAATCACTATTCCATGTGGACACATCGTGGTCAATGGACGAGCA
AACTGAATTCCAAGGATCGAATTCTTCCGTCGCTGTTCGCTGGAGAGCTA
TCGACATGGAAAGCAAGATTACGGAATATCGCTGGGCCATTGGCACTTCC
AAAGGTACCACTGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97329gene:BL97329Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97329_cuf4transcript:BL97329_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97329_cuf4-E1BL97329_cuf4-E1-1564476830-388550Branchiostoma lanceolatumexon
BL97329_cuf4-E2BL97329_cuf4-E2-1564476830-388552Branchiostoma lanceolatumexon
BL97329_cuf4-E3BL97329_cuf4-E3-1564476830-388554Branchiostoma lanceolatumexon
BL97329_cuf4-E4BL97329_cuf4-E4-1564476830-388556Branchiostoma lanceolatumexon
BL97329_cuf4-E5BL97329_cuf4-E5-1564476830-388559Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000207genomeSc0000207:407832..409225 +
Properties
Property NameValue
Transcript idBL97329_cuf4
Biotypeprotein_coding