TCONS_00004116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004116
Unique NameTCONS_00004116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004116 ID=TCONS_00004116|Name=TCONS_00004116|organism=Clytia hemisphaerica|type=transcript|length=794bp
CAATAAAATATATTCATCAAAATTCCCtctaaagataaaaaaacatgtcc
atGTCCTGTCCATTCGTTATCTCGCCTTTTAAGATGTGGTCTTCAGAAAC
ACGTTTCACTTAATTTACTAAGAAGCTTAAAGGACTAATTTGACATTGAT
TTTACTTGACATGAATTATATTTTATACTTATCTTCATTGCATCTCTGGA
TCAGTGGAATCATTGCTGTCACTTGGAACgattttttgagagaaaataaT
GTCTATGTAGATTGGCAAAGAGACGTCACAAATCATCAAGAATCATTTCG
ATGTTATCCGTCCGAATCTCTGGTTGAAATCAATAAAGAGAGAACTGATG
TTCTTCCTAGCTATATCAAGATGAAAACAGATTGCACATCCTGTTGCTTG
AACTCCCTGTTTGAATGTGTAGCTCCAAGAAAAATcatgaagatgaagaa
atttAAACAGTTTTCAACGAAACACGTGTATTTGGGCGAAAGTCAGCATG
CAGTATTTGAAGTGGATAAATGTATATGTAGATGTCGGATAACAACAAAT
GATTGCCCTCCAGGGACGCGCTTTGAAAAAGAGAGCTGCGCATGTATCGA
TCCCGTCAAATTTCCAACAGGCTTTGAATGCTGACGAAGAAGAGAATGGG
GACGACAATTTTTTCATAGATAAGGAAACTCGTTACCATTATTTTTAGAA
AGGACATTAAACCTTATTACAATTATTCTTAATGGTAGTTAATTAATTGT
TTTAATATTATTATTTAAAGGATGTATCTATATATTGATGTAGT
Run BLAST on NCBI

transcript from alignment at sc0000039:371769..375221-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004116 ID=TCONS_00004116|Name=TCONS_00004116|organism=Clytia hemisphaerica|type=transcript|length=3453bp|location=Sequence derived from alignment at sc0000039:371769..375221- (Clytia hemisphaerica)
CAATAAAATATATTCATCAAAATTCCCTCTAAAGATAAAAAAACATGTCC
ATGTCCTGTCCATTCGTTATCTCGCCTTTTAAGATGTGGTCTTCAGAAAC
ACGTTTCACTTAATTTACTAAGAAGCTTAAAGGACTAATTTGACATTGAT
TTTACTTGACATGAATTATATTTTATACTTATCTTGTAAGTTATATTCTA
AATTTCGTATGATATTTTACGAATTTACATGCATAACGTTTATTAACATA
TGCAGGCTAGGTTTTTGGTACCCAAACAATGGCTCTATTGTTTGAGAACA
ATAGAATGCTAATTATAATGTGAGCCTGATAGACACTTGGTATGACACCT
GGTATGACTACCTATGGTAGACACTTGCTTATAAAAATTTTGACAATTTA
ACTCGTTAATTTGTATTATCATTTCAGCATTGCATCTCTGGATCAGTGGA
ATCATTGCTGTAAGAATTTGAATATTTTTACTTTAATTTGATTTCACACA
TAATTTTTAACTTTCTGAAAATTTAAACTCGTAAGTTCTTCTTTTTCAAC
TCGAAGCTGATGAAAAAAATCCTTGAAATTTTTTAAAGTTTTACACATAA
GCCCAATTTGAATTTGTGGGGCTATCTCATTGGACGAAACAAACTTTATT
ATTGAGAATTCGAGTGAAAGTCGGCATGTGTGTCAGTGTCTTTTTTTTTG
CTCGAATTAAATTTGTTTTTCTTATCAGGTCACTTGGAACGATTTTTTGA
GAGAAAATAATGTCTATGTAGATTGGCAAAGAGACGTCACAAATCATCAA
GGTTTGTTCTCCAAATTATCTTCATATACGATCTATCTCTATTATCGAGT
CATGAGTATTTCCTTGTCTAAATTACGTGCTTTCTGTGAACGAGTCTACC
TATTAATCATATGTTTTCGTAAGCCTAGCGTCACTCTAATTAGAGCTTGA
TTCTCAGAAACTGGCTCAAAGTTTTACTTTTTTAGCCCACTCGCTGTTTT
TTTGTAATTTGCTTTTTGTGCAAACTTTTTCTAGAAGTAACGACGTCATC
AACCCCCCATACTCTCTTTCCCTGCCTCTCTTCCTTGTGGTTGTCGTTTG
TACGTTCAACAGATCTTTCTAAAAATTGTTTTTGTTTCTCCAAGGGAAGG
GCAGGTGGTTGAGGAGCTAAAAGTGTGGTATGCAAAGAACTTGCAGAGGA
TTTAAGTTTCATTATAACCTTTCATCGTTTTTAATTAGCCTTTAGAATGT
TTGTGGGTTGTTTGAATCAAATTATGAAATATAAGCATTTTTTTTGTTCA
TTTTAAAACATACCAGCATGTCATGGTCACTATAGATTAATTTGCAGTGT
CATTGTATGCCAAAAGTTTAGCGATATAGTACACCCTCTGGCCACTGCCG
GCTATTTACACAGATATACCAATACACTTTTTGACTTTGATAGCTTGCCT
AACCTTAACCAGCTTGATTTCAAACAAACGGGAAAAAAAGTTTCCTTCTC
TACTCAAATTTAAAGTAAACAGAGAAAAAACCTTGATTTCTTCTAAAATT
TCATCTACATGTTTCTAGTATAACTTTTAGGTGTCCTAAGTTCTGTAGAA
TTTCCAAATTTTATTTTTCATATAATAAACCTCATAACCCTCCAAAAGGG
TTACTGTTCGTTTTCGTCTGGCCTCTTATAAGAACTTTAATATATTTCCT
GTCTTTTTATATATAGAATCATTTCGATGTTATCCGTCCGAATCTCTGGT
TGAAATCAATAAAGAGAGAACTGATGTTCTTCCTAGCTATATCAAGATGA
AAACAGATTGCACATCCTGTTGCTTGAACTCCCTGTTTGAATGTGTAGCT
CCAAGAAAAATCATGAAGATGAAGAAATTTAAACAGTTTTCAACGAAACG
TAAGTCTAAGAATTACTTTGTATATTAACTTTCAAAGGATAGTTAATGCT
CTTTCCTAGAAAAACCTGACACGCCTTCTGTTGAAGTTACCTCTTAAATC
ATAATCCGATAGATTTTAAATCCCAGGATTTTAAACATTTACTTTGCAAT
TCCTTGATCTCGTTAAAACCACTTGACAATTTACAGTGACACCCTGTAAT
CGTACTTCGGGCCCTGCTAAAAAAATTATGTAAGGTTTTTAATCTAATGG
ACGAGAAGGTTTTTAATATTGACTGTCTTTGATATCAATCACATCAATAA
TATCAATTTCAAGGACGTGTCCCTATCGAACTAATCTTGATCATTTTAAG
TACTAATAAAAGGATTTCCTACTGGTAGAACACTGCTTACCAAAAAACAA
TTTCCGCCCCTAACACCCTCTAATAATTACAGCCCAAAACATTCTTTAGA
TTTTGGAAAGTGCTTTAATGCTTCCAAAATCTTTCCTGGATCCACGATCT
ACAAAATTATTTATTCTTTCGGAAATTGACACCCCTTTGCTATTAGGATT
ATTTGTCACTAAAAGAAATAAACAAAGATTCGTCAAAATTTGTATAGAAG
GCCCTCGTTATTAATCCGCATTTACGTGATCGGAAAACAAACCACGTGCA
GGTTTAAACGGGTCTGCAAAATTTGTACAAGGTGCTACCTATTAGTCATT
GCCTCATGTTTTGACTCTTGTCGATAATGTCACAAATATGATTTGTTGAA
GCGTCGAAAAGATAATTTCAAGCAAGATGTTGATACTTAATACATATCAT
AGTCCGATTAAATTTAATATTCTTTTCGTTAAAATATTTGACACAACTAA
ATGTCATCCAAATTTCAAACTTAGTTGCTGATTTTGTTTCGGTGTGTCAC
CCAATATTTATTAATTAAACCCTACAGTTATCTCTTAGCCAAACTTTTGA
ATAGAAATTCCGCACATAATAATTTTAGTACATGTCCCGGGTTTAGGTAG
TTTCAGTGAGACGAGGGTGACTAGATGAAGGGCTAGCAATTAAGTAATTT
ATTAAATTTATACTTGGTAGCACTTGTACTTTTACTGAAAACTCGAAAAA
GCCAAAGTCAATCTAAATCCTACCAAAATTTTAGCCCTTCTTATATATCA
CATGGTTATGCTCTTTTTTTGTGAGTCAGAGGGTTTGACGTGGTATCAAA
ATTACTAATTTTTCCTTTTATTCTATTTTCAGACGTGTATTTGGGCGAAA
GTCAGCATGCAGTATTTGAAGTGGATAAATGTATATGTAGATGTCGGATA
ACAACAAATGATTGCCCTCCAGGGACGCGCTTTGAAAAAGAGAGCTGCGC
ATGTATCGATCCCGTCAAATTTCCAACAGGCTTTGAATGCTGACGAAGAA
GAGAATGGGGACGACAATTTTTTCATAGATAAGGAAACTCGTTACCATTA
TTTTTAGAAAGGACATTAAACCTTATTACAATTATTCTTAATGGTAGTTA
ATTAATTGTTTTAATATTATTATTTAAAGGATGTATCTATATATTGATGT
AGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002292XLOC_002292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004116-exon-sc0000039-1575043694:375037..375221TCONS_00004116-exon-sc0000039-1575043694:375037..375221Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1575043694:374763..374794TCONS_00004116-exon-sc0000039-1575043694:374763..374794Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1575043694:374421..374493TCONS_00004116-exon-sc0000039-1575043694:374421..374493Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1575043694:373323..373505TCONS_00004116-exon-sc0000039-1575043694:373323..373505Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1575043694:371769..372089TCONS_00004116-exon-sc0000039-1575043694:371769..372089Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1510915933:375037..375221TCONS_00004116-exon-sc0000039-1510915933:375037..375221Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1510915933:374763..374794TCONS_00004116-exon-sc0000039-1510915933:374763..374794Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1510915933:374421..374493TCONS_00004116-exon-sc0000039-1510915933:374421..374493Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1510915933:373323..373505TCONS_00004116-exon-sc0000039-1510915933:373323..373505Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1510915933:371769..372089TCONS_00004116-exon-sc0000039-1510915933:371769..372089Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1491911889:375037..375221TCONS_00004116-exon-sc0000039-1491911889:375037..375221Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1491911889:374763..374794TCONS_00004116-exon-sc0000039-1491911889:374763..374794Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1491911889:374421..374493TCONS_00004116-exon-sc0000039-1491911889:374421..374493Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1491911889:373323..373505TCONS_00004116-exon-sc0000039-1491911889:373323..373505Clytia hemisphaericaexon
TCONS_00004116-exon-sc0000039-1491911889:371769..372089TCONS_00004116-exon-sc0000039-1491911889:371769..372089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:371769..375221 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06825	1.07938	0.669495	0.870677	0.398698	0	12.9235	10.3196	1.49482	2.16017	1.19812	0.3938	1.74614	3.12454	2.6184	2.88255	0.887767	0.454966	4.08564	3.61759	0.547236	0.418282	2.17019	1.33976	0.317424	1.98305	0.956177	0.697195	0	0.334329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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