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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004175 ID=TCONS_00004175|Name=TCONS_00004175|organism=Clytia hemisphaerica|type=transcript|length=1284bp
TGTAGAACTGCATTCATAGGGAGATATCAAAAAGTACACACACGATGTCT
TGGCGTCTATCAGTCCTTACTTTGTTCCTTGTGGCGAGTACAATATCATC
TGCAAAATTAGTACCAAAGCAAGGCCTTAACATTACTGAAATATGTATCA
ATAGCAatattttattatcaaaatgTAATTGCAATGATCTACTCTGTTTG
TGTGGTACCGTTTCTCCCAGAAAGGTTACCATCCCTCCTGGAGCAAGTTT
AGAAACAGTTTGTCAACTACTTTCAGTTAAAAATTGTACAACTCATCATC
CTCTTGTTAaaccatatttaaaaaaatcaccagATCAATACATCATCAAA
TGTCGGCCATTTATTCGAAGATTTCGAGCCATTTTCACTATCGTTTTTTC
CGTTCTCGGTTTCGTTGGCAACGGGTTTGTTATGATGGTTACAATGGTAA
ACTGGGAGCGTTCCACAAAATGTCACAAACTAATTGGAGGACTGGCTgtt
ggtgattttattttttcaatcattCAAATCATCGATGTTTCTCCTTACCT
TCGACGTGGTGGAAATATTTGTGATTATATCTACGGGCAAATTGGATGCA
AGCTTATTTCATCCTTACTCATTCTGAGTTCGTTAGTTTCGTTGGGTTTC
ATTCTAATCATCACATTGGAGCGGTTTATCGGTATCATTTATCCTTTCTC
CAGAGGATTATCATCGTTGAAACTGAAAGCAATTGTTCTTCTGAACACCA
TATTGTCAATCAGTTTGATCATCCCTGTGTCAATAGTTTTAGAATATGAT
CCAATCCCAAAAAGGTGCTGGGAAAACTGGGCGTGGTATGGACATAAAGA
AGCGTCCAGAATCTACACGTGGACTGTTTTCATATTGAATGACGTTCTCC
CGTTGATTTGTTTGGTAACAATGTATGGGAAAATTATTCATCGACTTCTC
AACACCACAACAGAAATCAACAACTTCCAACAAAAACAGCGacataaaga
aaacaaaagaattatcATTATTCTTCTCATTGTGGTGATTTGTTATTTCG
TATTAGTTTTACCCGATCGAATCGTATGGGTCCTGATCGATGAAAGACTT
GTTAACGTAGATACAAACGATTTCTCCCTTTTGAAATTATATATGAAGCT
ACCAATTGTGGTGCACGCGGTGGTCAATCCTGTCATTTACTCCATCGTTG
ATCACAAGTTCAGGAAATCTTTGATTCGGATTTTCATCAAAGGGAGTCGT
CGTCAAGAAGATAGTGGACGTATCGGGACTAAAT Run BLAST on NCBI protein sequence of TCONS_00004175-protein >TCONS_00004175-protein ID=TCONS_00004175-protein|Name=TCONS_00004175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
MSWRLSVLTLFLVASTISSAKLVPKQGLNITEICINSNILLSKCNCNDLL
CLCGTVSPRKVTIPPGASLETVCQLLSVKNCTTHHPLVKPYLKKSPDQYI
IKCRPFIRRFRAIFTIVFSVLGFVGNGFVMMVTMVNWERSTKCHKLIGGL
AVGDFIFSIIQIIDVSPYLRRGGNICDYIYGQIGCKLISSLLILSSLVSL
GFILIITLERFIGIIYPFSRGLSSLKLKAIVLLNTILSISLIIPVSIVLE
YDPIPKRCWENWAWYGHKEASRIYTWTVFILNDVLPLICLVTMYGKIIHR
LLNTTTEINNFQQKQRHKENKRIIIILLIVVICYFVLVLPDRIVWVLIDE
RLVNVDTNDFSLLKLYMKLPIVVHAVVNPVIYSIVDHKFRKSLIRIFIKG
SRRQEDSGRIGTK Run BLAST on NCBI transcript from alignment at sc0000039:363618..364901 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004175 ID=TCONS_00004175|Name=TCONS_00004175|organism=Clytia hemisphaerica|type=transcript|length=1284bp|location=Sequence derived from alignment at sc0000039:363618..364901 (Clytia hemisphaerica)
ATTTAGTCCCGATACGTCCACTATCTTCTTGACGACGACTCCCTTTGATG
AAAATCCGAATCAAAGATTTCCTGAACTTGTGATCAACGATGGAGTAAAT
GACAGGATTGACCACCGCGTGCACCACAATTGGTAGCTTCATATATAATT
TCAAAAGGGAGAAATCGTTTGTATCTACGTTAACAAGTCTTTCATCGATC
AGGACCCATACGATTCGATCGGGTAAAACTAATACGAAATAACAAATCAC
CACAATGAGAAGAATAATgataattcttttgttttctttatgtCGCTGTT
TTTGTTGGAAGTTGTTGATTTCTGTTGTGGTGTTGAGAAGTCGATGAATA
ATTTTCCCATACATTGTTACCAAACAAATCAACGGGAGAACGTCATTCAA
TATGAAAACAGTCCACGTGTAGATTCTGGACGCTTCTTTATGTCCATACC
ACGCCCAGTTTTCCCAGCACCTTTTTGGGATTGGATCATATTCTAAAACT
ATTGACACAGGGATGATCAAACTGATTGACAATATGGTGTTCAGAAGAAC
AATTGCTTTCAGTTTCAACGATGATAATCCTCTGGAGAAAGGATAAATGA
TACCGATAAACCGCTCCAATGTGATGATTAGAATGAAACCCAACGAAACT
AACGAACTCAGAATGAGTAAGGATGAAATAAGCTTGCATCCAATTTGCCC
GTAGATATAATCACAAATATTTCCACCACGTCGAAGGTAAGGAGAAACAT
CGATGATTTGaatgattgaaaaaataaaatcaccaacAGCCAGTCCTCCA
ATTAGTTTGTGACATTTTGTGGAACGCTCCCAGTTTACCATTGTAACCAT
CATAACAAACCCGTTGCCAACGAAACCGAGAACGGAAAAAACGATAGTGA
AAATGGCTCGAAATCTTCGAATAAATGGCCGACATTTGATGATGTATTGA
TctggtgatttttttaaatatggttTAACAAGAGGATGATGAGTTGTACA
ATTTTTAACTGAAAGTAGTTGACAAACTGTTTCTAAACTTGCTCCAGGAG
GGATGGTAACCTTTCTGGGAGAAACGGTACCACACAAACAGAGTAGATCA
TTGCAATTAcattttgataataaaatatTGCTATTGATACATATTTCAGT
AATGTTAAGGCCTTGCTTTGGTACTAATTTTGCAGATGATATTGTACTCG
CCACAAGGAACAAAGTAAGGACTGATAGACGCCAAGACATCGTGTGTGTA
CTTTTTGATATCTCCCTATGAATGCAGTTCTACA Coding sequence (CDS) from alignment at sc0000039:363618..364901 >TCONS_00004175 ID=TCONS_00004175|Name=TCONS_00004175|organism=Clytia hemisphaerica|type=CDS|length=1239bp|location=Sequence derived from alignment at sc0000039:363618..364901 (Clytia hemisphaerica)
TTTAGTCCCGATACGTCCACTATCTTCTTGACGACGACTCCCTTTGATGA
AAATCCGAATCAAAGATTTCCTGAACTTGTGATCAACGATGGAGTAAATG
ACAGGATTGACCACCGCGTGCACCACAATTGGTAGCTTCATATATAATTT
CAAAAGGGAGAAATCGTTTGTATCTACGTTAACAAGTCTTTCATCGATCA
GGACCCATACGATTCGATCGGGTAAAACTAATACGAAATAACAAATCACC
ACAATGAGAAGAATAATgataattcttttgttttctttatgtCGCTGTTT
TTGTTGGAAGTTGTTGATTTCTGTTGTGGTGTTGAGAAGTCGATGAATAA
TTTTCCCATACATTGTTACCAAACAAATCAACGGGAGAACGTCATTCAAT
ATGAAAACAGTCCACGTGTAGATTCTGGACGCTTCTTTATGTCCATACCA
CGCCCAGTTTTCCCAGCACCTTTTTGGGATTGGATCATATTCTAAAACTA
TTGACACAGGGATGATCAAACTGATTGACAATATGGTGTTCAGAAGAACA
ATTGCTTTCAGTTTCAACGATGATAATCCTCTGGAGAAAGGATAAATGAT
ACCGATAAACCGCTCCAATGTGATGATTAGAATGAAACCCAACGAAACTA
ACGAACTCAGAATGAGTAAGGATGAAATAAGCTTGCATCCAATTTGCCCG
TAGATATAATCACAAATATTTCCACCACGTCGAAGGTAAGGAGAAACATC
GATGATTTGaatgattgaaaaaataaaatcaccaacAGCCAGTCCTCCAA
TTAGTTTGTGACATTTTGTGGAACGCTCCCAGTTTACCATTGTAACCATC
ATAACAAACCCGTTGCCAACGAAACCGAGAACGGAAAAAACGATAGTGAA
AATGGCTCGAAATCTTCGAATAAATGGCCGACATTTGATGATGTATTGAT
ctggtgatttttttaaatatggttTAACAAGAGGATGATGAGTTGTACAA
TTTTTAACTGAAAGTAGTTGACAAACTGTTTCTAAACTTGCTCCAGGAGG
GATGGTAACCTTTCTGGGAGAAACGGTACCACACAAACAGAGTAGATCAT
TGCAATTAcattttgataataaaatatTGCTATTGATACATATTTCAGTA
ATGTTAAGGCCTTGCTTTGGTACTAATTTTGCAGATGATATTGTACTCGC
CACAAGGAACAAAGTAAGGACTGATAGACGCCAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004175-exon-sc0000039-1491911889:363618..364901 | TCONS_00004175-exon-sc0000039-1491911889:363618..364901 | Clytia hemisphaerica | exon |
| TCONS_00004175-exon-sc0000039-1510915933:363618..364901 | TCONS_00004175-exon-sc0000039-1510915933:363618..364901 | Clytia hemisphaerica | exon |
| TCONS_00004175-exon-sc0000039-1575043694:363618..364901 | TCONS_00004175-exon-sc0000039-1575043694:363618..364901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:363618..364901 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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