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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96642_cuf2 >transcript:BL96642_cuf2-protein ID=transcript:BL96642_cuf2-protein|Name=transcript:BL96642_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=268bp
TGSATINVIVTDTNTAPTIADATFTINEDAGIGDTVGTVQATDPDSGTDG
QLTYTTSVSPSAGDSLFVYDTSSGGIEVIGVLDFETLTQYIMTIIVQDGA
AASATASVTINIGDVNDVAPSFDQTLYQVSINEDELAGTNVVTFVMTDVE
GTGAITFDFVKGNGAGKFTLNSNSVQINSVINIDSPDLDDVHYTLVVKAM
DGGVPELTSTATVEVEINPVNENPDFSALTTPFISQVQESDAIGTTIATL
TAVDNDYGTQGELTYALG Run BLAST on NCBI mRNA from alignment at Sc0000190:168817..172580+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96642_cuf2 ID=transcript:BL96642_cuf2|Name=transcript:BL96642_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3764bp|location=Sequence derived from alignment at Sc0000190:168817..172580+ (Branchiostoma lanceolatum)
ACCGGATCCGCCACAATCAACGTGATCGTGACTGACACCAACACGGCACC
GACCATAGCCGACGCCACCTTTACGGTACGATCTTTGTCCTGTATGTTAT
ACAGAAAAATAAACATAGATTCATCGATATGAGACAAGAAAAACACATTA
TACTGACTCCTATAAACTTACAGGACGCAGACACAAGTACAATTTACCTT
GTTTAAGTACTGTGAATACAGAAATGTTTGCGGTTATTTATGTTCGCGGT
TTTCGCGGAGACACTTTCACCGCGAACTTAAAACCACCGCGATCATTCTT
GTCCAATACTGTAGCAGTATGTGACTTACGTGCTGCCGCAAACTCAAAAC
CACCGCAAACACCCATGTTTACCTTAGCGCGTCATAAAAACCGCGCGTCC
TTAAATGCATTTACAGTACCACTGTTACTACCACATTTGCCACCCTTACT
CGAAAATTTACAATATTACGAATAAGTGGAATCAAAGGGTTCTTATATCT
AGCACTGCACGAAATGGCTTCGGATCCCGGCGGATACGTACATTGATTCC
TACGGAAATATTCCAAAGCCCGTTCGGATTTAGTAAGATCAGTAGTTACG
TTGGATCCGTCATTATCCGTCAGTATCCACCAAAAATACAGAAAAATCCC
TGTACGTATCCGCCGGGATCCGAAGCCATTTCGTGCAGTGTAGTCATAAA
AGAGTAACAACCTCTGTGCTTGCCATTCTTGCATACAGATCAACGAAGAC
GCTGGGATCGGAGACACTGTCGGTACGGTGCAGGCGACCGACCCTGACAG
CGGAACCGACGGGCAACTCACATACACAACATCAGGTTCGTCTATATTCA
TTTTTTCAAAATACATATTTTCCTATAAGATGAAGTATAATTAATCAAAA
TTCTTAAAATTGCCCTTGTACAACACAAAAGAAATATCCCAGGAAGCCTA
AAACAAATAGTATGTTGATCGAAAACGTATATTGGAAATGAGGTACCCAA
CGCCATGTATGTTGCACCATATCACCTTCAGAAAGTGTTTGTAAAGAGCG
GGAGTGAAATAGACCCCTACGTTTAAACAGAAAAACATATTTAAGGCTTC
AAAGATACATTGTAAGCATTTTGATCATGCAATAACGAGTCTTTCGACGT
TTTGTTTCAGTGTCTCCATCGGCAGGCGATAGTCTGTTCGTGTATGATAC
CTCGAGTGGCGGGATCGAAGTTATCGGAGTGCTGGACTTCGAGACTCTGA
CTCAGTACATCATGACCATCATCGTACAGGACGGGGCAGCAGCCTCGGCC
ACAGCTTCGGTAGGCAAAGTATCTTTGGATAAAACCAGAGCCTTAGAAAC
ATATTCCAAGAAGTCGTACAGAACCTCGCAAAATGAAATGAGAGCTCCAA
GTAAAACGACTCAGGAATATGTTTGTGTTTGTCCTTCTAATTGTACGACA
TCAAAGTTCAGGATATGAAGTAATAAATAGATCCCGAGATCTGGGCAACT
ATGTGGATTTGGTACTGCTCCGCCCACCCTCGGGAGTTTGTTGGCATCCC
TCGGGCTTCGCCCTCGGGAACCAACAACTCCTCGGGTGGGCGGAGCAGTA
CCAAATCCACATAGTTGCCCAGATCTCGGGATCTATCTATTTTAGAACCC
GGCTGTCTTTCCGAACAAATATTATAGATACACATATCAAAAAGGACATG
CATTGTTGGTGTCTTGAAGATGTTTGAGGTGAAATGCAAGAGGAAGGAAG
TTGAAATGTAAAACCTCCTTGACCAGACCATGAAAAATTATCTTGCACCT
CTGACCTAGTGGGACCAGTGTTGTGTGTTACTAGTAATTATAAGAAAACA
CATCTGCCTGGTGGCCTCCCAAGGGGTAGGGGTGTACTAAGTAACGAATA
AATTGACTAAGTTGGAGACGCCCACAATTCTATCCAATCCGGTTGATGGA
ACGTTGCCTACTGGTGGGCGTCTCCAACTTAGTCAATTTATTCGTTACTT
AGTACACCCCTACCCCTTGGCAGGCCACACTATGTGGATTTAGTCACAAG
AAATGCAAGCTCCTGATTGGCTTAGGGAAGACGGCCGGGTTCTAATGTAA
AAAAAATATCATAGTTCTCATCTATAATGTAAGCGGTATTATGTTGAATT
ATTGCAATCAAGATTGCTTTTCTGTTTTATTAGGTGACTATTAATATTGG
GGATGTGAACGACGTTGCACCATCGTTTGACCAGACACTGTACCAGGTAT
GCCAATTTAAATGTCAACTTTCTCCTCCAGTATTAATCAATATGGGATGT
CAATGTATAAGAAAGCAGTGCAGTTGCCATCTCTGCGCTAAAATCCTGTC
CCAGCATTTTAATCAGGGGTTGTATTATGGTTTAGGTGGATATCGGATCA
TCTGCCTTGGTGTAGTTATATGTATATTTACTCTCGTAATATCGAATGAA
AGTGACAGGAAAAGACCTACTTGATAAGAAACAGTTAAGTGCACCATTTA
ACTTCTATTTATTTATTTCACTCTTATGCTTCCTTTCATTCTATTGTCCC
AAGTGGTACGCGGTAAAGTCTGTGCATCTTAGCCACATGTATGCTAGGAC
TAGCATTACTGTAATTCTTGATTTTTAAGCTAATAAACTTAATTCTAGTG
ACTTAAGTGGTCTCTAGTCAACGCTAGAATATTTATCATATCAAACATCT
TCCGCCCCCTTTCTCTTGCTCCAACACTACTAATTTGCTAAATTACTAAG
TGTAGTTTATATGCACAATATACGTTAAAAAGTGTTCATAATCACACTCT
GCACACAACGCAGTAGTGATTTACACATGAACAAATTAGATACTGATTTT
CTTCAAGAAATGGAATGAAATTCTGATCATTAGTGTTTCTAAACCCGATC
TTGTTGACAGGTGTCAATCAACGAGGACGAGCTCGCAGGTACAAACGTGG
TGACCTTCGTCATGACCGACGTAGAGGGGACTGGCGCCATCACATTCGAC
TTTGTCAAGGGAAACGGGGCGGGAAAATTCACCCTCAACAGCAACTCCGT
ACAGATTAACTCGGTCATCAACATAGACTCACCGGACCTCGACGACGTCC
ACTACACTCTGGTTGTGAAGGCAATGGACGGAGGGGTGCCAGAACTGACC
AGTACGGCCACGGTGGAGGTGGAGATCAACCCGGTCAACGAGAATCCGGA
CTTCAGTGCGCTGACCACTCCCTTTATCAGCCAGGTAATGCAAGAAGCCC
CCCTCCCACAAAAACATTGTCCATTCATCATTCAACCCTGTCTCTGCGTC
TGGCATATGGGAAAGTGTTTTTTTGGGTTAAAAAGAAAACAACATTAGTT
AAGAGTTTATACATAACGTATTTGACAAGGCATTTCGGTTGTAAGAATGT
CTAGGTTATGTTACATATGGCCAACTTATATTCATAACAAAACGCGACTG
TATTTCAAAAACAGCTCAATATACATACACTTGCAGGCAAGGGTATATTT
AACATTTAATAACAAATTTTGTATCAATCTGGTGCAATCTTGGACACCCT
TTTTTTCAAACTGCCGCAACAACTATAGGTAACGAATGTGTTCATACTGT
GTTAGTTTTCTGAGAATGATATGGCTTGGGCTACAACTGTTACTGACGTT
GCTGTCTATTTTCACCAGGTTCAGGAGAGTGATGCGATCGGTACAACTAT
CGCTACACTGACGGCTGTTGACAATGACTACGGCACCCAGGGGGAACTCA
CATATGCCTTGGGC Coding sequence (CDS) from alignment at Sc0000190:168817..172580+ >transcript:BL96642_cuf2 ID=transcript:BL96642_cuf2|Name=transcript:BL96642_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4824bp|location=Sequence derived from alignment at Sc0000190:168817..172580+ (Branchiostoma lanceolatum)
ACCGGATCCGCCACAATCAACGTGATCGTGACTGACACCAACACGGCACC
GACCATAGCCGACGCCACCTTTACGATCAACGAAGACGCTGGGATCGGAG
ACACTGTCGGTACGGTGCAGGCGACCGACCCTGACAGCGGAACCGACGGG
CAACTCACATACACAACATCAGTGTCTCCATCGGCAGGCGATAGTCTGTT
CGTGTATGATACCTCGAGTGGCGGGATCGAAGTTATCGGAGTGCTGGACT
TCGAGACTCTGACTCAGTACATCATGACCATCATCGTACAGGACGGGGCA
GCAGCCTCGGCCACAGCTTCGGTGACTATTAATATTGGGGATGTGAACGA
CGTTGCACCATCGTTTGACCAGACACTGTACCAGGTGTCAATCAACGAGG
ACGAGCTCGCAGGTACAAACGTGGTGACCTTCGTCATGACCGACGTAGAG
GGGACTGGCGCCATCACATTCGACTTTGTCAAGGGAAACGGGGCGGGAAA
ATTCACCCTCAACAGCAACTCCGTACAGATTAACTCGGTCATCAACATAG
ACTCACCGGACCTCGACGACGTCCACTACACTCTGGTTGTGAAGGCAATG
GACGGAGGGGTGCCAGAACTGACCAGTACGGCCACGGTGGAGGTGGAGAT
CAACCCGGTCAACGAGAATCCGGACTTCAGTGCGCTGACCACTCCCTTTA
TCAGCCAGGTTCAGGAGAGTGATGCGATCGGTACAACTATCGCTACACTG
ACGGCTGTTGACAATGACTACGGCACCCAGGGGGAACTCACATATGCCTT
GGGCACCGGATCCGCCACAATCAACGTGATCGTGACTGACACCAACACGG
CACCGACCATAGCCGACGCCACCTTTACGATCAACGAAGACGCTGGGATC
GGAGACACTGTCGGTACGGTGCAGGCGACCGACCCTGACAGCGGAACCGA
CGGGCAACTCACATACACAACATCAGTGTCTCCATCGGCAGGCGATAGTC
TGTTCGTGTATGATACCTCGAGTGGCGGGATCGAAGTTATCGGAGTGCTG
GACTTCGAGACTCTGACTCAGTACATCATGACCATCATCGTACAGGACGG
GGCAGCAGCCTCGGCCACAGCTTCGGTGACTATTAATATTGGGGATGTGA
ACGACGTTGCACCATCGTTTGACCAGACACTGTACCAGGTGTCAATCAAC
GAGGACGAGCTCGCAGGTACAAACGTGGTGACCTTCGTCATGACCGACGT
AGAGGGGACTGGCGCCATCACATTCGACTTTGTCAAGGGAAACGGGGCGG
GAAAATTCACCCTCAACAGCAACTCCGTACAGATTAACTCGGTCATCAAC
ATAGACTCACCGGACCTCGACGACGTCCACTACACTCTGGTTGTGAAGGC
AATGGACGGAGGGGTGCCAGAACTGACCAGTACGGCCACGGTGGAGGTGG
AGATCAACCCGGTCAACGAGAATCCGGACTTCAGTGCGCTGACCACTCCC
TTTATCAGCCAGGTTCAGGAGAGTGATGCGATCGGTACAACTATCGCTAC
ACTGACGGCTGTTGACAATGACTACGGCACCCAGGGGGAACTCACATATG
CCTTGGGCACCGGATCCGCCACAATCAACGTGATCGTGACTGACACCAAC
ACGGCACCGACCATAGCCGACGCCACCTTTACGATCAACGAAGACGCTGG
GATCGGAGACACTGTCGGTACGGTGCAGGCGACCGACCCTGACAGCGGAA
CCGACGGGCAACTCACATACACAACATCAGTGTCTCCATCGGCAGGCGAT
AGTCTGTTCGTGTATGATACCTCGAGTGGCGGGATCGAAGTTATCGGAGT
GCTGGACTTCGAGACTCTGACTCAGTACATCATGACCATCATCGTACAGG
ACGGGGCAGCAGCCTCGGCCACAGCTTCGGTGACTATTAATATTGGGGAT
GTGAACGACGTTGCACCATCGTTTGACCAGACACTGTACCAGGTGTCAAT
CAACGAGGACGAGCTCGCAGGTACAAACGTGGTGACCTTCGTCATGACCG
ACGTAGAGGGGACTGGCGCCATCACATTCGACTTTGTCAAGGGAAACGGG
GCGGGAAAATTCACCCTCAACAGCAACTCCGTACAGATTAACTCGGTCAT
CAACATAGACTCACCGGACCTCGACGACGTCCACTACACTCTGGTTGTGA
AGGCAATGGACGGAGGGGTGCCAGAACTGACCAGTACGGCCACGGTGGAG
GTGGAGATCAACCCGGTCAACGAGAATCCGGACTTCAGTGCGCTGACCAC
TCCCTTTATCAGCCAGGTTCAGGAGAGTGATGCGATCGGTACAACTATCG
CTACACTGACGGCTGTTGACAATGACTACGGCACCCAGGGGGAACTCACA
TATGCCTTGGGCACCGGATCCGCCACAATCAACGTGATCGTGACTGACAC
CAACACGGCACCGACCATAGCCGACGCCACCTTTACGATCAACGAAGACG
CTGGGATCGGAGACACTGTCGGTACGGTGCAGGCGACCGACCCTGACAGC
GGAACCGACGGGCAACTCACATACACAACATCAGTGTCTCCATCGGCAGG
CGATAGTCTGTTCGTGTATGATACCTCGAGTGGCGGGATCGAAGTTATCG
GAGTGCTGGACTTCGAGACTCTGACTCAGTACATCATGACCATCATCGTA
CAGGACGGGGCAGCAGCCTCGGCCACAGCTTCGGTGACTATTAATATTGG
GGATGTGAACGACGTTGCACCATCGTTTGACCAGACACTGTACCAGGTGT
CAATCAACGAGGACGAGCTCGCAGGTACAAACGTGGTGACCTTCGTCATG
ACCGACGTAGAGGGGACTGGCGCCATCACATTCGACTTTGTCAAGGGAAA
CGGGGCGGGAAAATTCACCCTCAACAGCAACTCCGTACAGATTAACTCGG
TCATCAACATAGACTCACCGGACCTCGACGACGTCCACTACACTCTGGTT
GTGAAGGCAATGGACGGAGGGGTGCCAGAACTGACCAGTACGGCCACGGT
GGAGGTGGAGATCAACCCGGTCAACGAGAATCCGGACTTCAGTGCGCTGA
CCACTCCCTTTATCAGCCAGGTTCAGGAGAGTGATGCGATCGGTACAACT
ATCGCTACACTGACGGCTGTTGACAATGACTACGGCACCCAGGGGGAACT
CACATATGCCTTGGGCACCGGATCCGCCACAATCAACGTGATCGTGACTG
ACACCAACACGGCACCGACCATAGCCGACGCCACCTTTACGATCAACGAA
GACGCTGGGATCGGAGACACTGTCGGTACGGTGCAGGCGACCGACCCTGA
CAGCGGAACCGACGGGCAACTCACATACACAACATCAGTGTCTCCATCGG
CAGGCGATAGTCTGTTCGTGTATGATACCTCGAGTGGCGGGATCGAAGTT
ATCGGAGTGCTGGACTTCGAGACTCTGACTCAGTACATCATGACCATCAT
CGTACAGGACGGGGCAGCAGCCTCGGCCACAGCTTCGGTGACTATTAATA
TTGGGGATGTGAACGACGTTGCACCATCGTTTGACCAGACACTGTACCAG
GTGTCAATCAACGAGGACGAGCTCGCAGGTACAAACGTGGTGACCTTCGT
CATGACCGACGTAGAGGGGACTGGCGCCATCACATTCGACTTTGTCAAGG
GAAACGGGGCGGGAAAATTCACCCTCAACAGCAACTCCGTACAGATTAAC
TCGGTCATCAACATAGACTCACCGGACCTCGACGACGTCCACTACACTCT
GGTTGTGAAGGCAATGGACGGAGGGGTGCCAGAACTGACCAGTACGGCCA
CGGTGGAGGTGGAGATCAACCCGGTCAACGAGAATCCGGACTTCAGTGCG
CTGACCACTCCCTTTATCAGCCAGGTTCAGGAGAGTGATGCGATCGGTAC
AACTATCGCTACACTGACGGCTGTTGACAATGACTACGGCACCCAGGGGG
AACTCACATATGCCTTGGGCACCGGATCCGCCACAATCAACGTGATCGTG
ACTGACACCAACACGGCACCGACCATAGCCGACGCCACCTTTACGATCAA
CGAAGACGCTGGGATCGGAGACACTGTCGGTACGGTGCAGGCGACCGACC
CTGACAGCGGAACCGACGGGCAACTCACATACACAACATCAGTGTCTCCA
TCGGCAGGCGATAGTCTGTTCGTGTATGATACCTCGAGTGGCGGGATCGA
AGTTATCGGAGTGCTGGACTTCGAGACTCTGACTCAGTACATCATGACCA
TCATCGTACAGGACGGGGCAGCAGCCTCGGCCACAGCTTCGGTGACTATT
AATATTGGGGATGTGAACGACGTTGCACCATCGTTTGACCAGACACTGTA
CCAGGTGTCAATCAACGAGGACGAGCTCGCAGGTACAAACGTGGTGACCT
TCGTCATGACCGACGTAGAGGGGACTGGCGCCATCACATTCGACTTTGTC
AAGGGAAACGGGGCGGGAAAATTCACCCTCAACAGCAACTCCGTACAGAT
TAACTCGGTCATCAACATAGACTCACCGGACCTCGACGACGTCCACTACA
CTCTGGTTGTGAAGGCAATGGACGGAGGGGTGCCAGAACTGACCAGTACG
GCCACGGTGGAGGTGGAGATCAACCCGGTCAACGAGAATCCGGACTTCAG
TGCGCTGACCACTCCCTTTATCAGCCAGGTTCAGGAGAGTGATGCGATCG
GTACAACTATCGCTACACTGACGGCTGTTGACAATGACTACGGCACCCAG
GGGGAACTCACATATGCCTTGGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000190 | genome | Sc0000190:168817..172580 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96642_cuf2 |
| Biotype | protein_coding |
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