TCONS_00004172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004172
Unique NameTCONS_00004172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004172 ID=TCONS_00004172|Name=TCONS_00004172|organism=Clytia hemisphaerica|type=transcript|length=1684bp
taataatataataattaataaaaacagaaaaaacccACTACATACAAATT
GAACTCGGGAACTCGGCTTACTAAAGCAAAGCAATTTACACAGAGAAGAG
TTCCAACTAAATTGTTCTACGTTGCCGAAAAACTTTTCATCTCGAGAACG
TGATAAGATTGAGATCAGTGGTTGAGATAAAATGTTCTCCTAAAAGTATA
ACACATTTGCGATATTGATTCTAAATTCTCTTAACACCCGAACAATAACA
ATTGAAAAAGCTTGTACTAAAAAAGCTGATAttctaaaataccaaaaatc
tcATACCACGGCTTCAGCGGACCCAAACAGTTGAAACACTATGAATGCGA
AGAAAGAAATCGCAGAGTTAATGAGGAAAACATACGACCAACGCCCAGAG
TGTTCAAGGATCCACCCAGTCAAATATACTCCTATCGAGCCACCCAGTGC
ACTGAGTGAGTTCCCAAAACCAAATAAAGCTCCTGCATGTTTCGGAGATA
AGTCTTGAGCATTTAAAGAAATCGACGAGGTGCTAAAGGCGTTGACACCC
ACTGTTAACGCCATCACAAATAAGGCTTGCTGGAATGATTCCACTGTATT
TAAAAGCAAGGAAAATAATCCAGTGCCAAGGAAGAGCATAGCAGCATAAA
GTTTTCGTACATAAGTCGTTGATGCACCTGATGACATCAAAGTGTTCGAG
TAATAACCTGCAATGTTTTGAACAGCAAAGCTGGCCAACCATGGTATCAC
ATTGAAAATCCAGCCTTTACTTTCGGGGAATGCGTCATGAAAATAAGCTG
GTGCCCATGATAACAAAACGTAGAAGGTATACCCATAAGCGAAGAAAGCA
ACAAGAAAAGCCCAAACTGAAGCTCTTCGCAAGAGGCGTCTCCAAGGGAA
AGATTCTGTGTTAACTTTGTGACTGCTGAAATCGACGGTTGTTTTCGGTT
TACTGTTTTTGTCTACATGGTAATAAAACCGGAAAGCGTAAATCCACAAC
ATTGAAAAAccaccaatcaaaacaaagacaaaTCTCCAACTAGTGTGCTC
CATTATGATCGAACCGAAAAACCCAGTGGCGATGGTTCCAATTGAACATC
CAGAGAAAACAACACCAGTCACAAATCCTTTATCACTGTCTTTCACATGT
TTTGAAACAAGCGAGGATAAGGAAGGATAAAAAAATCCTTGAGCGCAACC
TGTGAAAAATCTTGTCGCCAATATAGCAAAAGTTCCTGAATTCAGAAACG
TTTGGGCAGTTGAAAAATACGGTAGGACAACAGTTAATGTAGCCCATATA
GTGGATGAGTACATGATCATTCGTTCACCACCATGTCGGTCTGCGAAATA
TCCTCCTAAAATATTGGTGGACAGGTAACCAAAGAAAAAAGCGGAAAGCG
CCATTCCTGAGATTTGTTTACTCCATCCCATTTCTTTGGCGATGGCTGGA
ACACAAACAGACATGGAGGTTCGTACACAGTACACCAAGATGGAGCCCAC
AAACAATATGATTGTCCAATGCCATCTTTTCCGTTCATTCCAAAACATGT
CACtgtcttttttcttgtttttcaaaatcaattctTCATCTGATGACGAC
TTGTATTCATTTTGAGCACAAATCTTCAAAGTGGCCATCAATTTTattat
tctgttttttttttatctatctctactacctaaa
Run BLAST on NCBI

protein sequence of TCONS_00004172-protein

>TCONS_00004172-protein ID=TCONS_00004172-protein|Name=TCONS_00004172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MATLKICAQNEYKSSSDEELILKNKKKDSDMFWNERKRWHWTIILFVGSI
LVYCVRTSMSVCVPAIAKEMGWSKQISGMALSAFFFGYLSTNILGGYFAD
RHGGERMIMYSSTIWATLTVVLPYFSTAQTFLNSGTFAILATRFFTGCAQ
GFFYPSLSSLVSKHVKDSDKGFVTGVVFSGCSIGTIATGFFGSIIMEHTS
WRFVFVLIGGFSMLWIYAFRFYYHVDKNSKPKTTVDFSSHKVNTESFPWR
RLLRRASVWAFLVAFFAYGYTFYVLLSWAPAYFHDAFPESKGWIFNVIPW
LASFAVQNIAGYYSNTLMSSGASTTYVRKLYAAMLFLGTGLFSLLLNTVE
SFQQALFVMALTVGVNAFSTSSISLNAQDLSPKHAGALFGFGNSLSALGG
SIGVYLTGWILEHSGRWSYVFLINSAISFFAFIVFQLFGSAEAVV
Run BLAST on NCBI

transcript from alignment at sc0000039:320126..321809

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004172 ID=TCONS_00004172|Name=TCONS_00004172|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at sc0000039:320126..321809 (Clytia hemisphaerica)
tttaggtagtagagatagataaaaaaaaaacagaataatAAAATTGATGG
CCACTTTGAAGATTTGTGCTCAAAATGAATACAAGTCGTCATCAGATGAa
gaattgattttgaaaaacaagaaaaaagacaGTGACATGTTTTGGAATGA
ACGGAAAAGATGGCATTGGACAATCATATTGTTTGTGGGCTCCATCTTGG
TGTACTGTGTACGAACCTCCATGTCTGTTTGTGTTCCAGCCATCGCCAAA
GAAATGGGATGGAGTAAACAAATCTCAGGAATGGCGCTTTCCGCTTTTTT
CTTTGGTTACCTGTCCACCAATATTTTAGGAGGATATTTCGCAGACCGAC
ATGGTGGTGAACGAATGATCATGTACTCATCCACTATATGGGCTACATTA
ACTGTTGTCCTACCGTATTTTTCAACTGCCCAAACGTTTCTGAATTCAGG
AACTTTTGCTATATTGGCGACAAGATTTTTCACAGGTTGCGCTCAAGGAT
TTTTTTATCCTTCCTTATCCTCGCTTGTTTCAAAACATGTGAAAGACAGT
GATAAAGGATTTGTGACTGGTGTTGTTTTCTCTGGATGTTCAATTGGAAC
CATCGCCACTGGGTTTTTCGGTTCGATCATAATGGAGCACACTAGTTGGA
GAtttgtctttgttttgattggtggTTTTTCAATGTTGTGGATTTACGCT
TTCCGGTTTTATTACCATGTAGACAAAAACAGTAAACCGAAAACAACCGT
CGATTTCAGCAGTCACAAAGTTAACACAGAATCTTTCCCTTGGAGACGCC
TCTTGCGAAGAGCTTCAGTTTGGGCTTTTCTTGTTGCTTTCTTCGCTTAT
GGGTATACCTTCTACGTTTTGTTATCATGGGCACCAGCTTATTTTCATGA
CGCATTCCCCGAAAGTAAAGGCTGGATTTTCAATGTGATACCATGGTTGG
CCAGCTTTGCTGTTCAAAACATTGCAGGTTATTACTCGAACACTTTGATG
TCATCAGGTGCATCAACGACTTATGTACGAAAACTTTATGCTGCTATGCT
CTTCCTTGGCACTGGATTATTTTCCTTGCTTTTAAATACAGTGGAATCAT
TCCAGCAAGCCTTATTTGTGATGGCGTTAACAGTGGGTGTCAACGCCTTT
AGCACCTCGTCGATTTCTTTAAATGCTCAAGACTTATCTCCGAAACATGC
AGGAGCTTTATTTGGTTTTGGGAACTCACTCAGTGCACTGGGTGGCTCGA
TAGGAGTATATTTGACTGGGTGGATCCTTGAACACTCTGGGCGTTGGTCG
TATGTTTTCCTCATTAACTCTGCGATTTCTTTCTTCGCATTCATAGTGTT
TCAACTGTTTGGGTCCGCTGAAGCCGTGGTATgagatttttggtatttta
gaaTATCAGCTTTTTTAGTACAAGCTTTTTCAATTGTTATTGTTCGGGTG
TTAAGAGAATTTAGAATCAATATCGCAAATGTGTTATACTTTTAGGAGAA
CATTTTATCTCAACCACTGATCTCAATCTTATCACGTTCTCGAGATGAAA
AGTTTTTCGGCAACGTAGAACAATTTAGTTGGAACTCTTCTCTGTGTAAA
TTGCTTTGCTTTAGTAAGCCGAGTTCCCGAGTTCAATTTGTATGTAGTgg
gttttttctgtttttattaattattatattatta

Coding sequence (CDS) from alignment at sc0000039:320126..321809

>TCONS_00004172 ID=TCONS_00004172|Name=TCONS_00004172|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000039:320126..321809 (Clytia hemisphaerica)
ATGGCCACTTTGAAGATTTGTGCTCAAAATGAATACAAGTCGTCATCAGA
TGAagaattgattttgaaaaacaagaaaaaagacaGTGACATGTTTTGGA
ATGAACGGAAAAGATGGCATTGGACAATCATATTGTTTGTGGGCTCCATC
TTGGTGTACTGTGTACGAACCTCCATGTCTGTTTGTGTTCCAGCCATCGC
CAAAGAAATGGGATGGAGTAAACAAATCTCAGGAATGGCGCTTTCCGCTT
TTTTCTTTGGTTACCTGTCCACCAATATTTTAGGAGGATATTTCGCAGAC
CGACATGGTGGTGAACGAATGATCATGTACTCATCCACTATATGGGCTAC
ATTAACTGTTGTCCTACCGTATTTTTCAACTGCCCAAACGTTTCTGAATT
CAGGAACTTTTGCTATATTGGCGACAAGATTTTTCACAGGTTGCGCTCAA
GGATTTTTTTATCCTTCCTTATCCTCGCTTGTTTCAAAACATGTGAAAGA
CAGTGATAAAGGATTTGTGACTGGTGTTGTTTTCTCTGGATGTTCAATTG
GAACCATCGCCACTGGGTTTTTCGGTTCGATCATAATGGAGCACACTAGT
TGGAGAtttgtctttgttttgattggtggTTTTTCAATGTTGTGGATTTA
CGCTTTCCGGTTTTATTACCATGTAGACAAAAACAGTAAACCGAAAACAA
CCGTCGATTTCAGCAGTCACAAAGTTAACACAGAATCTTTCCCTTGGAGA
CGCCTCTTGCGAAGAGCTTCAGTTTGGGCTTTTCTTGTTGCTTTCTTCGC
TTATGGGTATACCTTCTACGTTTTGTTATCATGGGCACCAGCTTATTTTC
ATGACGCATTCCCCGAAAGTAAAGGCTGGATTTTCAATGTGATACCATGG
TTGGCCAGCTTTGCTGTTCAAAACATTGCAGGTTATTACTCGAACACTTT
GATGTCATCAGGTGCATCAACGACTTATGTACGAAAACTTTATGCTGCTA
TGCTCTTCCTTGGCACTGGATTATTTTCCTTGCTTTTAAATACAGTGGAA
TCATTCCAGCAAGCCTTATTTGTGATGGCGTTAACAGTGGGTGTCAACGC
CTTTAGCACCTCGTCGATTTCTTTAAATGCTCAAGACTTATCTCCGAAAC
ATGCAGGAGCTTTATTTGGTTTTGGGAACTCACTCAGTGCACTGGGTGGC
TCGATAGGAGTATATTTGACTGGGTGGATCCTTGAACACTCTGGGCGTTG
GTCGTATGTTTTCCTCATTAACTCTGCGATTTCTTTCTTCGCATTCATAG
TGTTTCAACTGTTTGGGTCCGCTGAAGCCGTGGTATga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002322XLOC_002322Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004172-proteinTCONS_00004172-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004172-exon-sc0000039-1491911889:320126..321809TCONS_00004172-exon-sc0000039-1491911889:320126..321809Clytia hemisphaericaexon
TCONS_00004172-exon-sc0000039-1510915933:320126..321809TCONS_00004172-exon-sc0000039-1510915933:320126..321809Clytia hemisphaericaexon
TCONS_00004172-exon-sc0000039-1575043694:320126..321809TCONS_00004172-exon-sc0000039-1575043694:320126..321809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:320126..321809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.2415	23.0564	7.3531	5.40872	16.2182	12.2519	18.9871	18.8756	10.1952	13.7582	11.6482	7.41678	7.69441	7.06041	7.83965	9.20462	13.488	11.3078	5.3694	8.37452	9.72081	8.81369	36.5689	36.3053	11.1561	12.123	15.7979	11.4042	32.036	33.7004
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00004172 vs. Swiss-Prot (Human)
Match: S17A9 (Solute carrier family 17 member 9 OS=Homo sapiens GN=SLC17A9 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 8.711e-88
Identity = 149/423 (35.22%), Postives = 252/423 (59.57%), Query Frame = -2 
Query:  307 NKKKDSDMFWNERKRWHWTIILFVGSILVYCVRTSMSVCVPAIAKEMGWSKQISGMALSAFFFGYLSTNILGGYFADRHGGERMIMYSSTIWATLTVVLPYFSTAQTFLNSGTFAILA-TRFFTGCAQGFFYPSLSSLVSKHVKDSDKGFVTGVVFSGCSIGTIATGFFGSIIMEHTSWRFVFVLIGGFSMLWIYAFRFYYHVDKNSKPKTTVDFSSHKVNTES-FPWRRLLRRASVWAFLVAFFAYGYTFYVLLSWAPAYFHDAFPESKGWIFNVIPWLASFAVQNIAGYYSNTLMSSGASTTYVRKLYAAMXXXXXXXXXXXLNTVESFQQALFVMALTVGVNAFSTSSISLNAQDLSPKHAGALFGFGNSLSALGGSIGVYLTGWILEHSGRWSYVFLINSAISFFAFIVFQLFGSAEAV 1569
             +    D  W+  +   WT  L +G+ L+YC R+SM +C  +++++ GW+K+ +G+ LS+FF+GY  T ++GG+  DR GGE++I+ S++ W ++T V P  +     L+S   A +  +R   G  QG ++P+L+SL+S+ V++S++ F   +V +G   GT+ TG  GS+++E   W+ +F   GG ++LW++    Y   +K+      V   S  V+  +  PWRRL R+ +VWA +V+  +   +F++LLSW P +F + FP++KGWIFNV+PWL +      +G+ S+ L++ G     VRKL   M    + +F+L L    SF +++   + ++G+  F+ S IS+N QDL+P  AG LFG  N+  AL G +GV L G+++E +G W+ +F + + IS      F +FG A+ V
Sbjct:    9 RRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLA----HLSSAHLAFMTFSRILMGLLQGVYFPALTSLLSQKVRESERAFTYSIVGAGSQFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLWVWYVYRYLLSEKDLILALGVLAQSRPVSRHNRVPWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEETFPDAKGWIFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHTSSFCESVVFASASIGLQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTFLVFGQAQRV 427
The following BLAST results are available for this feature:
BLAST of TCONS_00004172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A98.711e-8835.22Solute carrier family 17 member 9 OS=Homo sapiens ... [more]
back to top